Rh7DG321000

Squamous cell carcinoma antigen recognized by T-cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0004707
Physical Location & Seq
Forward (+)
38254020 .. 38262302
8283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG321000.1

Sequence Viewer

Length: 2403 bp
ATGCTGGATGCCGCTGACCAAAATCCTAACTCCTCCAGCTCCGATTCCGATTCCGACTCCGGCTCCGGCTCCGATGACGAAGACCAAGCCCAGCAAAACCTGGAGATTCAAACACTCGAAGCCGAGCTCGCAACCAACCCCTCCAACTACGATGCCCATGTCCAATATATTCAGATTCTGAGGAAAATGGCTGACATTGAAAAGCTGAGGCGAGCGAGGGAAGCTATGAGTATGCTGTTGCCGTTAACCCCCTCCATGTGGCAGGATTGGGCTAAGGACGAACTTGCTATGGGCTCCGGACCCGAGACGTTTTCTACAGTTGAAAAGCTTTATGAGCAAGGAGTCTCTGATTATCTGTCCATCTCTCTTTGGCGAGACTACTTAAATTTTGTTCGAGAAAATGATCCGTCAGTAAAAGAATCTTCACCTGCTGGTATTTCCAAGGAAAGAGATTTATTTGAGCGTGCTCTTACTGCAGCTGGTTTGCATGTATCTGAAGGCAATAAGATATGGGAAGCTTACAGGGAGTTTGAGCAAGCTATATGTGATACTATCGATGGGACTGACACTCAGGCAAGAGAGAAGCAAATTCAGCGCATTCGTGTTATATTCCAACGTCAGCTATCAGTTCCCCATGTTAATATGAGATCAACACTTTTGGCTTACAAGGCATGGGAGATGGAACAAGGAACCATTGTTGACACTGGCTGCAGTGATCAGGATGGTATTTCATCTCATGTTGCCGCAGCATACCAAAAGGCATTGGAAATTTATAATGCCCGTGTTCATTTTGAAGAACAAATCAGTCAGCATGATATGCCTGAGATAGAAAGACTTGAAAAGTTCATGAACTACTTGAAATTTGAGCAATCTTCTGGAGATCCTGCCCGTGTTCAAGTGTTGTATGAACGGGCTATTGCTGAGTTTCCTATAGCCAGTCAGCTCTGGCTTGATTATACTTCCTATTTGGACAAAACTTTGAAGGTTGGCAGAATTATAAGCAACGTTTATTCTAGGGCCGTAAAGAATTGCCCCTGGGTTGGAGAACTTTGGGTCAGATATTTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGAGATTGCAGCTGTGTTTTTCAAGTCCCAGCAATGCACCTTTTCAACCCTTGATGAGTACGTGGAGTTGTTTCTCACCCGCATAGATGGCTTAAGACGAAGACTATCATGCCCCGTTGAAGGAGAGCACGCCTTGGATTATTCATTGTTGAGGGATACATTTCAGTCTGCATCGGATTACCTATCACCACAGATGAAGAACACAGATGTCCTGTTACGTTTGTATGCTTATTGGGCCCGCCTAGAGCTACATCTGGGAAAAGATTTAGTTGCTGCTCGGGGGGTTTGGGAAAGTTTACTGAAGATCAGTGGTACGATGATGGAAGCCTGGCTAGGTTATATAGCAATGGAAATTGAATCGGGCCATGTGAATGAAGCTCGGTCCATATACAGGAGATGCTACAGTAAAAAATTTCCCGGCACTGGTTCAGAGGACATTTGCTACTTGTGGTTGCGCTTTGAGAGGGAGTTTGGGTCGTTGGATGATTTTGACTATGCAGAACGTAAGGTTGCTCACCGTCTGCAAGAGCTTCAACTATTAAGGTCCAAGCAAGAATCCAAATTGACTGAAGAGAGGGAGAATTCTCTCAAAAAGAATGTGCGTGAGAAGAGAAAGCAAGCTTCAGATGTAAGTGATGAACAACCTCCAGCAAAGAGGCAAAAGGATGCAACTCAAAAGCAAAAGAAAGTGCATGGGAAGGATTATGAGGTGCAGAACAAAGCTGAACAAAATGAAGGGAAAGAGATGAAAGCCAAGGGGGCCAAAGATGTACAAAATGAGATGAAAGAGCCTTTTCTAGAGAAAACAAAAGTATACGCTGACCAATGCACTGCTTTTGTATCAAACCTTAGCTTAAAGGCAAATAATGAACATCTTCATCAGTTCTTCAGTGATGTTGGAGGAGTTGTTGCTATTCGAATACTGAAGGACAAGTTCACTGGAAATTCAAGGGGACTAGCATATGTGGACTTCTCAGATGATGCACACCTTACTGCAGCCATAGCAAAAAATAAACAGACACTCCTAGACAGGAAGCTGAGCATTGCGCGATCAAATCCAAAGCGTGGCAAGAAAGAACATGGGCACACTGATCAAACTGGTGCAGCCAGTGGATCTGGTGAGACCTCCAATGAACCTAGAGCAAGCCAAGGAAGCGACAGCGCGATTAAGAGGAAGAACACATTTGCGGTTCCGAGGAATGTTGCTGCACTTGGTTGGATCACGAATAAGCCAAAAACTCAGGATCCAGATGATGAAAAGCCAAAATCTAATGATGAGTTCAGAAACATGTTCCTGAAAGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1 Suf

Protein Analysis

800

Amino Acids

91.13

Weight (kDa)

5.86

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suf PF05843 36 - 364 5.9e-29 Suppressor of forked protein (Suf)
HAT_PRP39_N PF23240 39 - 221 1.1e-16 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 40 - 180 7.1e-06 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C PF23241 260 - 342 7e-12 PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 262 - 358 1.5e-07 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N PF23240 283 - 390 1.2e-06 PRP39 N-terminal HAT repeat
RRM_1 PF00076 645 - 712 3.2e-14 RNA recognition motif
Lsm_interact PF05391 782 - 799 1.6e-07 Lsm interaction motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 774, 998
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 2162
AccI GTMKAC 1 cut(s) 1911
AccII CGCG 2 cut(s) 2146, 2261
AccIII TCCGGA 1 cut(s) 296
AciI CCGC 5 cut(s) 12, 744, 1177, 1336, 2285
AclI AACGTT 1 cut(s) 1005
AclWI GGATC 6 cut(s) 398, 875, 2218, 2324, 2336, 2349
AcoI YGGCCR 1 cut(s) 1081
AcsI RAATTY 7 cut(s) 385, 588, 768, 860, 1508, 1678, 2041
AcuI CTGAAG 6 cut(s) 516, 1418, 1686, 1704, 1969, 2042
AfaI GTAC 3 cut(s) 1157, 1411, 1869
AfiI CCNNNNNNNGG 6 cut(s) 258, 1040, 1217, 1488, 1520, 2162
AflII CTTAAG 1 cut(s) 1189
AflIII ACRYGT 1 cut(s) 2385
AjnI CCWGG 3 cut(s) 99, 1034, 1424
Alw21I GWGCWC 3 cut(s) 129, 469, 1227
Alw26I GTCTC 4 cut(s) 299, 349, 369, 2213
AlwI GGATC 6 cut(s) 398, 875, 2218, 2324, 2336, 2349
AlwNI CAGNNNCTG 1 cut(s) 178
Ama87I CYCGRG 2 cut(s) 302, 1374
Aor13HI TCCGGA 1 cut(s) 296
AoxI GGCC 5 cut(s) 1017, 1081, 1332, 1459, 1857
ApaI GGGCCC 1 cut(s) 1336
ApeKI GCWGC 8 cut(s) 476, 708, 746, 1106, 1370, 2093, 2201, 2303
ApoI RAATTY 7 cut(s) 385, 588, 768, 860, 1508, 1678, 2041
Asp700I GAANNNNTTC 1 cut(s) 1971
AspLEI GCGC 4 cut(s) 597, 1554, 2146, 2261
AspS9I GGNCC 8 cut(s) 299, 1017, 1332, 1333, 1459, 1479, 1641, 1857
AsuC2I CCSGG 1 cut(s) 1515
AsuHPI GGTGA 5 cut(s) 417, 1165, 1275, 1604, 2228
AsuII TTCGAA 1 cut(s) 2014
AvaI CYCGRG 2 cut(s) 302, 1374
AvaII GGWCC 3 cut(s) 299, 1479, 1641
BaeGI GKGCMC 2 cut(s) 1336, 2184
BalI TGGCCA 1 cut(s) 1083
BamHI GGATCC 1 cut(s) 2341
BanII GRGCYC 3 cut(s) 129, 296, 1336
BbsI GAAGAC 2 cut(s) 87, 1204
Bbv12I GWGCWC 3 cut(s) 129, 469, 1227
BbvCI CCTCAGC 1 cut(s) 206
BbvI GCAGC 8 cut(s) 488, 695, 758, 1118, 1357, 2105, 2213, 2290
BccI CCATC 6 cut(s) 368, 551, 673, 716, 1178, 1411
BceAI ACGGC 2 cut(s) 226, 1004
BciT130I CCWGG 3 cut(s) 101, 1036, 1426
BciVI GTATCC 1 cut(s) 1246
BclI TGATCA 2 cut(s) 715, 2188
BcnI CCSGG 1 cut(s) 1515
BcoDI GTCTC 4 cut(s) 299, 349, 369, 2213
BfaI CTAG 7 cut(s) 1014, 1340, 1430, 1895, 2054, 2123, 2235
BfmI CTRYAG 6 cut(s) 315, 474, 709, 930, 1498, 2091
BfrI CTTAAG 1 cut(s) 1189
BfuAI ACCTGC 1 cut(s) 436
BfuI GTATCC 1 cut(s) 1246
BglI GCCNNNNNGGC 1 cut(s) 1856
BlpI GCTNAGC 1 cut(s) 2135
Bme1390I CCNGG 4 cut(s) 101, 1036, 1426, 1515
Bme18I GGWCC 3 cut(s) 299, 1479, 1641
BmeT110I CYCGRG 2 cut(s) 302, 1374
BmgT120I GGNCC 8 cut(s) 299, 1017, 1332, 1333, 1459, 1479, 1641, 1857
BmiI GGNNCC 9 cut(s) 64, 70, 295, 301, 691, 1334, 1858, 2289, 2343
BmrFI CCNGG 4 cut(s) 101, 1036, 1426, 1515
BmsI GCATC 5 cut(s) 142, 1277, 1484, 1753, 2068
BpiI GAAGAC 2 cut(s) 87, 1204
BpmI CTGGAG 4 cut(s) 19, 122, 897, 1728
Bpu10I CCTNAGC 3 cut(s) 206, 273, 1946
Bpu1102I GCTNAGC 1 cut(s) 2135
Bpu14I TTCGAA 1 cut(s) 2014
BpuMI CCSGG 1 cut(s) 1515
Bsa29I ATCGAT 1 cut(s) 555
BsaAI YACGTR 1 cut(s) 1159
BsaI GGTCTC 1 cut(s) 2213
BsaJI CCNNGG 8 cut(s) 441, 1034, 1035, 1071, 1230, 1851, 2245, 2291
BsaWI WCCGGW 1 cut(s) 296
BsaXI ACNNNNNCTCC 8 cut(s) 47, 77, 1556, 1586, 1989, 2019, 2103, 2133
Bsc4I CCNNNNNNNGG 6 cut(s) 258, 1040, 1217, 1488, 1520, 2162
Bse1I ACTGG 6 cut(s) 709, 936, 1525, 2041, 2200, 2205
Bse3DI GCAATG 3 cut(s) 1136, 1449, 2139
BseAI TCCGGA 1 cut(s) 296
BseBI CCWGG 3 cut(s) 101, 1036, 1426
BseCI ATCGAT 1 cut(s) 555
BseDI CCNNGG 8 cut(s) 441, 1034, 1035, 1071, 1230, 1851, 2245, 2291
BseGI GGATG 4 cut(s) 13, 727, 1585, 1768
BseLI CCNNNNNNNGG 6 cut(s) 258, 1040, 1217, 1488, 1520, 2162
BseMI GCAATG 3 cut(s) 1136, 1449, 2139
BseMII CTCAG 9 cut(s) 170, 197, 584, 813, 912, 1083, 2085, 2126, 2351
BseNI ACTGG 6 cut(s) 709, 936, 1525, 2041, 2200, 2205
BseRI GAGGAG 2 cut(s) 22, 2013
BseSI GKGCMC 2 cut(s) 1336, 2184
BseXI GCAGC 8 cut(s) 488, 695, 758, 1118, 1357, 2105, 2213, 2290
BseYI CCCAGC 2 cut(s) 90, 1125
BsgI GTGCAG 3 cut(s) 1829, 2220, 2289
Bsh1236I CGCG 2 cut(s) 2146, 2261
BshFI GGCC 5 cut(s) 1019, 1083, 1334, 1461, 1859
BshVI ATCGAT 1 cut(s) 555
BsiHKAI GWGCWC 3 cut(s) 129, 469, 1227
BsiHKCI CYCGRG 2 cut(s) 302, 1374
BsiSI CCGG 4 cut(s) 60, 66, 297, 1515
BslFI GGGAC 3 cut(s) 574, 1108, 2064
BslI CCNNNNNNNGG 6 cut(s) 258, 1040, 1217, 1488, 1520, 2162
BsmAI GTCTC 4 cut(s) 299, 349, 369, 2213
BsmBI CGTCTC 1 cut(s) 299
BsmFI GGGAC 3 cut(s) 574, 1108, 2064
BsmI GAATGC 1 cut(s) 597
BsnI GGCC 5 cut(s) 1019, 1083, 1334, 1461, 1859
Bso31I GGTCTC 1 cut(s) 2213
BsoBI CYCGRG 2 cut(s) 302, 1374
Bsp119I TTCGAA 1 cut(s) 2014
Bsp120I GGGCCC 1 cut(s) 1332
Bsp1286I GDGCHC 6 cut(s) 129, 296, 469, 1227, 1336, 2184
Bsp13I TCCGGA 1 cut(s) 296
Bsp1407I TGTACA 1 cut(s) 1867
Bsp1720I GCTNAGC 1 cut(s) 2135
BspACI CCGC 5 cut(s) 12, 744, 1177, 1336, 2285
BspANI GGCC 5 cut(s) 1019, 1083, 1334, 1461, 1859
BspCNI CTCAG 9 cut(s) 171, 198, 583, 814, 913, 1084, 2084, 2127, 2350
BspDI ATCGAT 1 cut(s) 555
BspEI TCCGGA 1 cut(s) 296
BspFNI CGCG 2 cut(s) 2146, 2261
BspHI TCATGA 1 cut(s) 846
BspLI GGNNCC 9 cut(s) 64, 70, 295, 301, 691, 1334, 1858, 2289, 2343
BspMAI CTGCAG 3 cut(s) 478, 713, 2095
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 6 cut(s) 398, 875, 2218, 2324, 2336, 2349
BspT104I TTCGAA 1 cut(s) 2014
BspTI CTTAAG 1 cut(s) 1189
BspTNI GGTCTC 1 cut(s) 2213
BsrDI GCAATG 3 cut(s) 1136, 1449, 2139
BsrGI TGTACA 1 cut(s) 1867
BsrI ACTGG 6 cut(s) 709, 936, 1525, 2041, 2200, 2205
BssECI CCNNGG 8 cut(s) 441, 1034, 1035, 1071, 1230, 1851, 2245, 2291
BssNAI GTATAC 1 cut(s) 1912
BssT1I CCWWGG 5 cut(s) 441, 1071, 1230, 1851, 2245
Bst1107I GTATAC 1 cut(s) 1912
Bst2UI CCWGG 3 cut(s) 101, 1036, 1426
Bst4CI ACNGT 3 cut(s) 319, 1502, 1616
Bst6I CTCTTC 2 cut(s) 1662, 1700
BstAFI CTTAAG 1 cut(s) 1189
BstAPI GCANNNNNTGC 1 cut(s) 817
BstAUI TGTACA 1 cut(s) 1867
BstBAI YACGTR 1 cut(s) 1159
BstBI TTCGAA 1 cut(s) 2014
BstC8I GCNNGC 8 cut(s) 129, 213, 465, 537, 1227, 1336, 1716, 2242
BstF5I GGATG 4 cut(s) 13, 727, 1585, 1768
BstFNI CGCG 2 cut(s) 2146, 2261
BstHHI GCGC 4 cut(s) 597, 1554, 2146, 2261
BstMAI GTCTC 4 cut(s) 299, 349, 369, 2213
BstNI CCWGG 3 cut(s) 101, 1036, 1426
BstNSI RCATGY 2 cut(s) 491, 2389
BstSCI CCNGG 4 cut(s) 99, 1034, 1424, 1513
BstSFI CTRYAG 6 cut(s) 315, 474, 709, 930, 1498, 2091
BstSLI GKGCMC 2 cut(s) 1336, 2184
BstUI CGCG 2 cut(s) 2146, 2261
BstV1I GCAGC 8 cut(s) 488, 695, 758, 1118, 1357, 2105, 2213, 2290
BstV2I GAAGAC 2 cut(s) 87, 1204
BstX2I RGATCY 3 cut(s) 880, 2210, 2341
BstYI RGATCY 3 cut(s) 880, 2210, 2341
BstZ17I GTATAC 1 cut(s) 1912
Bsu15I ATCGAT 1 cut(s) 555
BsuI GTATCC 1 cut(s) 1246
BsuRI GGCC 5 cut(s) 1019, 1083, 1334, 1461, 1859
BsuTUI ATCGAT 1 cut(s) 555
BtsCI GGATG 4 cut(s) 13, 727, 1585, 1768
BtsI GCAGTG 2 cut(s) 718, 1926
BtsIMutI CAGTG 9 cut(s) 702, 718, 1411, 1518, 1926, 1993, 2034, 2184, 2212
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 8 cut(s) 129, 213, 465, 537, 1227, 1336, 1716, 2242
CaiI CAGNNNCTG 1 cut(s) 178
CciI TCATGA 1 cut(s) 846
CfoI GCGC 4 cut(s) 597, 1554, 2146, 2261
Cfr13I GGNCC 8 cut(s) 299, 1017, 1332, 1333, 1459, 1479, 1641, 1857
ClaI ATCGAT 1 cut(s) 555
Csp6I GTAC 3 cut(s) 1156, 1410, 1868
CviQI GTAC 3 cut(s) 1156, 1410, 1868
EaeI YGGCCR 1 cut(s) 1081
Eam1104I CTCTTC 2 cut(s) 1662, 1700
EarI CTCTTC 2 cut(s) 1662, 1700
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 5 cut(s) 441, 1071, 1230, 1851, 2245
Eco24I GRGCYC 3 cut(s) 129, 296, 1336
Eco31I GGTCTC 1 cut(s) 2213
Eco47I GGWCC 3 cut(s) 299, 1479, 1641
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 6 cut(s) 516, 1418, 1686, 1704, 1969, 2042
Eco88I CYCGRG 2 cut(s) 302, 1374
EcoICRI GAGCTC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 1678
EcoRII CCWGG 3 cut(s) 99, 1034, 1424
EcoT14I CCWWGG 5 cut(s) 441, 1071, 1230, 1851, 2245
EcoT38I GRGCYC 3 cut(s) 129, 296, 1336
ErhI CCWWGG 5 cut(s) 441, 1071, 1230, 1851, 2245
Esp3I CGTCTC 1 cut(s) 299
FaqI GGGAC 3 cut(s) 574, 1108, 2064
FauI CCCGC 2 cut(s) 1184, 1343
FauNDI CATATG 1 cut(s) 2059
FbaI TGATCA 2 cut(s) 715, 2188
FblI GTMKAC 1 cut(s) 1911
FokI GGATG 4 cut(s) 20, 734, 1592, 1775
FriOI GRGCYC 3 cut(s) 129, 296, 1336
FspBI CTAG 7 cut(s) 1014, 1340, 1430, 1895, 2054, 2123, 2235
GlaI GCGC 4 cut(s) 596, 1553, 2145, 2260
GsaI CCCAGC 2 cut(s) 94, 1129
GsuI CTGGAG 4 cut(s) 19, 122, 897, 1728
HaeIII GGCC 5 cut(s) 1019, 1083, 1334, 1461, 1859
HapII CCGG 4 cut(s) 60, 66, 297, 1515
HhaI GCGC 4 cut(s) 597, 1554, 2146, 2261
Hin6I GCGC 4 cut(s) 595, 1552, 2144, 2259
HinP1I GCGC 4 cut(s) 595, 1552, 2144, 2259
HincII GTYRAC 2 cut(s) 246, 700
HindII GTYRAC 2 cut(s) 246, 700
HindIII AAGCTT 3 cut(s) 326, 516, 1716
HinfI GANTC 9 cut(s) 44, 50, 56, 106, 175, 342, 419, 1454, 1652
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 4 cut(s) 60, 66, 297, 1515
HphI GGTGA 5 cut(s) 417, 1165, 1275, 1604, 2228
Hpy166II GTNNAC 6 cut(s) 246, 700, 1394, 1912, 2034, 2065
Hpy8I GTNNAC 6 cut(s) 246, 700, 1394, 1912, 2034, 2065
HpyAV CCTTC 6 cut(s) 491, 976, 1211, 1789, 1826, 2017
HpyCH4III ACNGT 3 cut(s) 319, 1502, 1616
HpyCH4IV ACGT 6 cut(s) 308, 616, 1005, 1158, 1315, 1600
HpySE526I ACGT 6 cut(s) 308, 616, 1005, 1158, 1315, 1600
HspAI GCGC 4 cut(s) 595, 1552, 2144, 2259
Kpn2I TCCGGA 1 cut(s) 296
Ksp22I TGATCA 2 cut(s) 715, 2188
KspAI GTTAAC 1 cut(s) 246
LmnI GCTCC 5 cut(s) 44, 68, 74, 299, 1075
Lsp1109I GCAGC 8 cut(s) 488, 695, 758, 1118, 1357, 2105, 2213, 2290
LweI GCATC 5 cut(s) 142, 1277, 1484, 1753, 2068
MaeI CTAG 7 cut(s) 1014, 1340, 1430, 1895, 2054, 2123, 2235
MaeII ACGT 6 cut(s) 308, 616, 1005, 1158, 1315, 1600
MaeIII GTNAC 1 cut(s) 1311
MflI RGATCY 3 cut(s) 880, 2210, 2341
MhlI GDGCHC 6 cut(s) 129, 296, 469, 1227, 1336, 2184
MlsI TGGCCA 1 cut(s) 1083
MluNI TGGCCA 1 cut(s) 1083
MlyI GAGTC 2 cut(s) 50, 351
MmeI TCCRAC 7 cut(s) 78, 168, 637, 1021, 1557, 1975, 2294
Mox20I TGGCCA 1 cut(s) 1083
MroI TCCGGA 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 1971
MscI TGGCCA 1 cut(s) 1083
MseI TTAA 7 cut(s) 245, 383, 639, 1190, 1637, 1952, 2265
MslI CAYNNNNRTG 1 cut(s) 1467
Msp20I TGGCCA 1 cut(s) 1083
MspA1I CMGCKG 3 cut(s) 14, 479, 1109
MspCI CTTAAG 1 cut(s) 1189
MspI CCGG 4 cut(s) 60, 66, 297, 1515
MspR9I CCNGG 4 cut(s) 101, 1036, 1426, 1515
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 3 cut(s) 101, 1036, 1426
MvnI CGCG 2 cut(s) 2146, 2261
NciI CCSGG 1 cut(s) 1515
NdeI CATATG 1 cut(s) 2059
NlaIV GGNNCC 9 cut(s) 64, 70, 295, 301, 691, 1334, 1858, 2289, 2343
NmeAIII GCCGAG 1 cut(s) 148
NspI RCATGY 2 cut(s) 491, 2389
NspV TTCGAA 1 cut(s) 2014
PagI TCATGA 1 cut(s) 846
PaqCI CACCTGC 1 cut(s) 436
PasI CCCWGGG 1 cut(s) 1035
PciI ACATGT 1 cut(s) 2385
PctI GAATGC 1 cut(s) 597
PdmI GAANNNNTTC 1 cut(s) 1971
PfeI GAWTC 7 cut(s) 44, 50, 106, 175, 419, 1454, 1652
PflMI CCANNNNNTGG 1 cut(s) 2162
PleI GAGTC 2 cut(s) 50, 350
PpsI GAGTC 2 cut(s) 50, 350
Ppu21I YACGTR 1 cut(s) 1159
PscI ACATGT 1 cut(s) 2385
PsiI TTATAA 2 cut(s) 774, 998
Psp124BI GAGCTC 1 cut(s) 129
Psp1406I AACGTT 1 cut(s) 1005
Psp6I CCWGG 3 cut(s) 99, 1034, 1424
PspFI CCCAGC 2 cut(s) 90, 1125
PspGI CCWGG 3 cut(s) 99, 1034, 1424
PspN4I GGNNCC 9 cut(s) 64, 70, 295, 301, 691, 1334, 1858, 2289, 2343
PspOMI GGGCCC 1 cut(s) 1332
PspPI GGNCC 8 cut(s) 299, 1017, 1332, 1333, 1459, 1479, 1641, 1857
PstI CTGCAG 3 cut(s) 478, 713, 2095
PstNI CAGNNNCTG 1 cut(s) 178
PsuI RGATCY 3 cut(s) 880, 2210, 2341
PvuII CAGCTG 2 cut(s) 479, 1109
RsaI GTAC 3 cut(s) 1157, 1411, 1869
RsaNI GTAC 3 cut(s) 1156, 1410, 1868
RseI CAYNNNNRTG 1 cut(s) 1467
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 7 cut(s) 245, 383, 639, 1190, 1637, 1952, 2265
Sau96I GGNCC 8 cut(s) 299, 1017, 1332, 1333, 1459, 1479, 1641, 1857
SchI GAGTC 2 cut(s) 50, 351
ScrFI CCNGG 4 cut(s) 101, 1036, 1426, 1515
SduI GDGCHC 6 cut(s) 129, 296, 469, 1227, 1336, 2184
SfaNI GCATC 5 cut(s) 142, 1277, 1484, 1753, 2068
SfcI CTRYAG 6 cut(s) 315, 474, 709, 930, 1498, 2091
SfuI TTCGAA 1 cut(s) 2014
SinI GGWCC 3 cut(s) 299, 1479, 1641
SmiMI CAYNNNNRTG 1 cut(s) 1467
SmlI CTYRAG 1 cut(s) 1189
SmoI CTYRAG 1 cut(s) 1189
SsiI CCGC 5 cut(s) 12, 744, 1177, 1336, 2285
SspMI CTAG 7 cut(s) 1014, 1340, 1430, 1895, 2054, 2123, 2235
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 4 cut(s) 99, 1034, 1424, 1513
StyI CCWWGG 5 cut(s) 441, 1071, 1230, 1851, 2245
TaaI ACNGT 3 cut(s) 319, 1502, 1616
TaiI ACGT 6 cut(s) 311, 619, 1008, 1161, 1318, 1603
TaqI TCGA 4 cut(s) 117, 394, 555, 2014
TaqII GACCGA 1 cut(s) 1467
TatI WGTACW 1 cut(s) 1867
TauI GCSGC 2 cut(s) 14, 746
TfiI GAWTC 7 cut(s) 44, 50, 106, 175, 419, 1454, 1652
Tru1I TTAA 7 cut(s) 245, 383, 639, 1190, 1637, 1952, 2265
Tru9I TTAA 7 cut(s) 245, 383, 639, 1190, 1637, 1952, 2265
TscAI CASTG 9 cut(s) 709, 718, 1411, 1525, 1933, 1993, 2041, 2191, 2212
TseI GCWGC 8 cut(s) 476, 708, 746, 1106, 1370, 2093, 2201, 2303
TspGWI ACGGA 1 cut(s) 396
TspRI CASTG 9 cut(s) 709, 718, 1411, 1525, 1933, 1993, 2041, 2191, 2212
Van91I CCANNNNNTGG 1 cut(s) 2162
Vha464I CTTAAG 1 cut(s) 1189
VpaK11BI GGWCC 3 cut(s) 299, 1479, 1641
XapI RAATTY 7 cut(s) 385, 588, 768, 860, 1508, 1678, 2041
XbaI TCTAGA 1 cut(s) 1894
XceI RCATGY 2 cut(s) 491, 2389
XmiI GTMKAC 1 cut(s) 1911
XmnI GAANNNNTTC 1 cut(s) 1971
XspI CTAG 7 cut(s) 1014, 1340, 1430, 1895, 2054, 2123, 2235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.