Rorug07G0180600

Squamous cell carcinoma antigen recognized by T-cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001763
Physical Location & Seq
Forward (+)
15117221 .. 15122754
5534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0180600.1

Sequence Viewer

Length: 663 bp
ATGGAGTGCTCCCAGAATCCCAAGGTAAGCAAAGAAGAGGTGATAGCGAAGCTAAAGGACGATGGCGACTTCGACAGGCTCCGCCGCAAGATCATTCAAAAGCTCAAAAACAACGAGGAATTACGCGAAAATATTATTTCAATTGTGAAGCAATCACAAGCGCTTAATCGCCCGGGTGCCGAGAACATGAAACCCAGGCAACTCTCTGATGACATTTACCAGGAGGTTGGGGGCAAAGTGATGAGCCAGATATCGGATGGCTTGTGGGGGATAATCAGATCAAGTGATGCAATGCAGAGTGAAATAAGCGAAACTGTTCACTCTGTTTACAATAAATTGGCTAATCCACAAGGGAATGCAGAGGGTCACTCCTCCACTCATGTTGTTCAAGTTCAACTCGAGTCTAGTGATAATGGATTAGTCGCTGCTGCTGCCGGTGGAGCTGTGTCCGACAATCATCAGGATGACAATAACCATGAGGCACAACTTCCGCCTCCTGAAAAAGGAGCTATGACAGAAGAGCACCGGGAAATGTTACAGGATAAGATGGATACCGAGGGTGTTGATCGCGTAGTGGCTCCTGGCGTTTCTACAGACACGGAGCGCAAGCAGGAATGTGATGGTAGCGATGAGGACCCCGATGTGCCTCCTGGTTTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1 Suf

Protein Analysis

220

Amino Acids

24.13

Weight (kDa)

4.7

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COMPASS-Shg1 PF05205 15 - 105 5e-06 COMPASS (Complex proteins associated with Set1p) component shg1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 176
AccII CGCG 2 cut(s) 126, 570
AciI CCGC 3 cut(s) 82, 85, 491
AfeI AGCGCT 1 cut(s) 162
AfiI CCNNNNNNNGG 3 cut(s) 253, 503, 656
AgsI TTSAA 4 cut(s) 98, 141, 389, 395
AjnI CCWGG 4 cut(s) 194, 219, 580, 649
AluBI AGCT 4 cut(s) 52, 103, 443, 509
AluI AGCT 4 cut(s) 52, 103, 443, 509
Alw21I GWGCWC 2 cut(s) 11, 525
Ama87I CYCGRG 2 cut(s) 172, 398
Aor51HI AGCGCT 1 cut(s) 162
ApeKI GCWGC 3 cut(s) 425, 428, 431
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 163, 606
AspS9I GGNCC 1 cut(s) 634
AsuC2I CCSGG 3 cut(s) 173, 174, 527
AsuHPI GGTGA 1 cut(s) 52
AvaI CYCGRG 2 cut(s) 172, 398
AvaII GGWCC 1 cut(s) 634
BanI GGYRCC 1 cut(s) 176
Bbv12I GWGCWC 2 cut(s) 11, 525
BbvI GCAGC 3 cut(s) 412, 415, 418
BccI CCATC 4 cut(s) 56, 251, 541, 614
BciT130I CCWGG 4 cut(s) 196, 221, 582, 651
BciVI GTATCC 1 cut(s) 544
BcnI CCSGG 3 cut(s) 173, 174, 527
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 164
BfuI GTATCC 1 cut(s) 544
BisI GCNGC 4 cut(s) 85, 426, 429, 432
BlsI GCNGC 4 cut(s) 86, 427, 430, 433
Bme1390I CCNGG 7 cut(s) 173, 174, 196, 221, 527, 582, 651
Bme18I GGWCC 1 cut(s) 634
BmeT110I CYCGRG 2 cut(s) 172, 398
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 4 cut(s) 80, 178, 579, 636
BmrFI CCNGG 7 cut(s) 173, 174, 196, 221, 527, 582, 651
BmsI GCATC 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpuMI CCSGG 3 cut(s) 173, 174, 527
BsaJI CCNNGG 4 cut(s) 21, 172, 194, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 253, 503, 656
Bse118I RCCGGY 1 cut(s) 434
Bse3DI GCAATG 1 cut(s) 297
BseBI CCWGG 4 cut(s) 196, 221, 582, 651
BseDI CCNNGG 4 cut(s) 21, 172, 194, 555
BseGI GGATG 2 cut(s) 262, 469
BseLI CCNNNNNNNGG 3 cut(s) 253, 503, 656
BseMI GCAATG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 361
BseXI GCAGC 3 cut(s) 412, 415, 418
Bsh1236I CGCG 2 cut(s) 126, 570
BshNI GGYRCC 1 cut(s) 176
BsiHKAI GWGCWC 2 cut(s) 11, 525
BsiHKCI CYCGRG 2 cut(s) 172, 398
BsiSI CCGG 3 cut(s) 173, 435, 526
BslI CCNNNNNNNGG 3 cut(s) 253, 503, 656
BsmI GAATGC 1 cut(s) 361
BsoBI CYCGRG 2 cut(s) 172, 398
Bsp1286I GDGCHC 2 cut(s) 11, 525
Bsp143I GATC 3 cut(s) 90, 278, 565
BspACI CCGC 3 cut(s) 82, 85, 491
BspFNI CGCG 2 cut(s) 126, 570
BspLI GGNNCC 4 cut(s) 80, 178, 579, 636
BspQI GCTCTTC 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 297
BsrFI RCCGGY 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 4 cut(s) 21, 172, 194, 555
BssMI GATC 3 cut(s) 90, 278, 565
BssT1I CCWWGG 1 cut(s) 21
Bst2UI CCWGG 4 cut(s) 196, 221, 582, 651
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 2 cut(s) 30, 513
BstC8I GCNNGC 1 cut(s) 608
BstENI CCTNNNNNAGG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 262, 469
BstFNI CGCG 2 cut(s) 126, 570
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 2 cut(s) 163, 606
BstKTI GATC 3 cut(s) 93, 281, 568
BstMBI GATC 3 cut(s) 90, 278, 565
BstMWI GCNNNNNNNGC 2 cut(s) 431, 440
BstNI CCWGG 4 cut(s) 196, 221, 582, 651
BstSCI CCNGG 7 cut(s) 171, 172, 194, 219, 525, 580, 649
BstSFI CTRYAG 1 cut(s) 591
BstUI CGCG 2 cut(s) 126, 570
BstV1I GCAGC 3 cut(s) 412, 415, 418
BstXI CCANNNNNNTGG 1 cut(s) 227
BsuI GTATCC 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 262, 469
Cac8I GCNNGC 1 cut(s) 608
CfoI GCGC 2 cut(s) 163, 606
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 1 cut(s) 634
Cfr9I CCCGGG 1 cut(s) 172
CspCI CAANNNNNGTGG 2 cut(s) 364, 399
CviAII CATG 3 cut(s) 187, 380, 476
CviJI RGCY 9 cut(s) 52, 79, 103, 246, 261, 341, 443, 509, 578
CviKI_1 RGCY 9 cut(s) 52, 79, 103, 246, 261, 341, 443, 509, 578
DpnI GATC 3 cut(s) 92, 280, 567
DpnII GATC 3 cut(s) 90, 278, 565
Eam1104I CTCTTC 2 cut(s) 30, 513
EarI CTCTTC 2 cut(s) 30, 513
EciI GGCGGA 2 cut(s) 71, 480
Eco130I CCWWGG 1 cut(s) 21
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 634
Eco47III AGCGCT 1 cut(s) 162
Eco88I CYCGRG 2 cut(s) 172, 398
EcoNI CCTNNNNNAGG 1 cut(s) 501
EcoO109I RGGNCCY 1 cut(s) 634
EcoRII CCWGG 4 cut(s) 194, 219, 580, 649
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 21
FaeI CATG 3 cut(s) 190, 383, 479
FaiI YATR 4 cut(s) 188, 381, 477, 512
FatI CATG 3 cut(s) 186, 379, 475
Fnu4HI GCNGC 4 cut(s) 85, 426, 429, 432
FokI GGATG 2 cut(s) 269, 476
Fsp4HI GCNGC 4 cut(s) 85, 426, 429, 432
FspBI CTAG 1 cut(s) 405
GlaI GCGC 2 cut(s) 162, 605
GluI GCNGC 4 cut(s) 85, 426, 429, 432
HaeII RGCGCY 1 cut(s) 164
HapII CCGG 3 cut(s) 173, 435, 526
HhaI GCGC 2 cut(s) 163, 606
Hin1II CATG 3 cut(s) 190, 383, 479
Hin6I GCGC 2 cut(s) 161, 604
HinP1I GCGC 2 cut(s) 161, 604
HinfI GANTC 2 cut(s) 16, 401
HpaII CCGG 3 cut(s) 173, 435, 526
HphI GGTGA 1 cut(s) 52
Hpy166II GTNNAC 2 cut(s) 319, 328
Hpy188I TCNGA 4 cut(s) 208, 256, 278, 451
Hpy188III TCNNGA 2 cut(s) 461, 497
Hpy8I GTNNAC 2 cut(s) 319, 328
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 3 cut(s) 290, 295, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 440
Hsp92II CATG 3 cut(s) 190, 383, 479
HspAI GCGC 2 cut(s) 161, 604
Kzo9I GATC 3 cut(s) 90, 278, 565
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 6 cut(s) 14, 84, 440, 506, 583, 601
Lsp1109I GCAGC 3 cut(s) 412, 415, 418
LweI GCATC 1 cut(s) 277
MaeI CTAG 1 cut(s) 405
MaeIII GTNAC 2 cut(s) 365, 534
MalI GATC 3 cut(s) 92, 280, 567
MboI GATC 3 cut(s) 90, 278, 565
MboII GAAGA 2 cut(s) 47, 530
MfeI CAATTG 1 cut(s) 141
MhlI GDGCHC 2 cut(s) 11, 525
MluCI AATT 3 cut(s) 119, 141, 335
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 1 cut(s) 474
MroXI GAANNNNTTC 1 cut(s) 315
MseI TTAA 2 cut(s) 165, 661
MslI CAYNNNNRTG 1 cut(s) 462
MspI CCGG 3 cut(s) 173, 435, 526
MspR9I CCNGG 7 cut(s) 173, 174, 196, 221, 527, 582, 651
MunI CAATTG 1 cut(s) 141
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 4 cut(s) 196, 221, 582, 651
MvnI CGCG 2 cut(s) 126, 570
MwoI GCNNNNNNNGC 2 cut(s) 431, 440
NciI CCSGG 3 cut(s) 173, 174, 527
NdeII GATC 3 cut(s) 90, 278, 565
NlaIII CATG 3 cut(s) 190, 383, 479
NlaIV GGNNCC 4 cut(s) 80, 178, 579, 636
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 365
PaeR7I CTCGAG 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 513
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 1 cut(s) 16
PkrI GCNGC 4 cut(s) 86, 427, 430, 433
PleI GAGTC 1 cut(s) 409
PpsI GAGTC 1 cut(s) 409
PpuMI RGGWCCY 1 cut(s) 634
Psp5II RGGWCCY 1 cut(s) 634
Psp6I CCWGG 4 cut(s) 194, 219, 580, 649
PspGI CCWGG 4 cut(s) 194, 219, 580, 649
PspN4I GGNNCC 4 cut(s) 80, 178, 579, 636
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PspXI VCTCGAGB 1 cut(s) 398
RseI CAYNNNNRTG 1 cut(s) 462
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 2 cut(s) 165, 661
SatI GCNGC 4 cut(s) 85, 426, 429, 432
Sau3AI GATC 3 cut(s) 90, 278, 565
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 7 cut(s) 173, 174, 196, 221, 527, 582, 651
SduI GDGCHC 2 cut(s) 11, 525
SetI ASST 7 cut(s) 27, 42, 54, 105, 228, 445, 511
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 591
Sfr274I CTCGAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 398
SmaI CCCGGG 1 cut(s) 174
SmiMI CAYNNNNRTG 1 cut(s) 462
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 3 cut(s) 119, 141, 335
SsiI CCGC 3 cut(s) 82, 85, 491
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 7 cut(s) 171, 172, 194, 219, 525, 580, 649
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 2 cut(s) 72, 399
TasI AATT 3 cut(s) 119, 141, 335
TauI GCSGC 1 cut(s) 87
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 165, 661
Tru9I TTAA 2 cut(s) 165, 661
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 3 cut(s) 425, 428, 431
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 614
TspMI CCCGGG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 634
XagI CCTNNNNNAGG 1 cut(s) 501
XcmI CCANNNNNNNNNTGG 1 cut(s) 254
XhoI CTCGAG 1 cut(s) 398
XmaI CCCGGG 1 cut(s) 172
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.