Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

37201915 .. 37203832

Gene Structure 1918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19603

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAAAGATTGAGCATAAGTATGTGGAGGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTCCAAAGGTGGTGGTTTTCTTGCATGGATTTCCAGAAATATGGTACTCATGGAGGCACCAAATGATTGCCATGGCCAACAATGGCTATCGGGCAATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCTGCCAGCTGAGCCTGAAAAGGCAACTTTCAAGGACCTCGTTGACGAGGTTGTTGGAGTTTTGGATGCTTTGGCAATTGACAAGGCTTTCCTTGTTGCAAAGGATTTTGGATCTATAACTGAATACCTTGTAGCAGCTGTCTATCCCGAGCGGGTAGCTGGTGTTATATCACTAGGCATCCCTTTCATGCTTCCAGGTCCCACTGTTGTCCAAAATCATCTTCTTCCTGAAGGATTCTACATATCAAGGTGGCAGGAGCCAGGGAGGGCGGAAGCAGATTTTGGCCGCTTTGATGTCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTTCCAATAGCTGCTAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTACCGCCAGGGTTCTCAGAGGAAGATCTTTCAGTCTATGCATCTCTGTATGAGAAGTCTGGATTCCGTTTTCCTTTGAGAGTTCCATATAGGAGTTTAACAGTGGATTGTGGTTATACTGATCCAAAAGTCTCAGCTCCAACACTGCTTATCCAGGGTGAGAAAGACTACCTCTTAAATTTTCCCGGGACTGAGGACTACATACGATCTGGGGTAATGAAACATGTTGTGCCTGATTTGGACATTACCTTCATTGCAGAAGGGGGTCACTTTGTGCAAGAACAACTTCCAGAGAAAATTAATGAGCTAATCCTCACTTTCCTCAGCAAACATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

313

Amino Acids

35.0

Weight (kDa)

5.04

Isoelectric Point (pI)

41.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	26 - 126	1.1e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	27 - 259	2.4e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	28 - 302	2.7e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	4 cut(s)	352, 470, 487, 605
AclWI	GGATC	4 cut(s)	319, 570, 581, 716
AcoI	YGGCCR	2 cut(s)	144, 484
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	874
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	4 cut(s)	394, 460, 607, 753
AjuI	GAANNNNNNNTTGG	4 cut(s)	405, 437, 465, 497
Alw26I	GTCTC	1 cut(s)	736
AlwI	GGATC	4 cut(s)	319, 570, 581, 716
Ama87I	CYCGRG	2 cut(s)	347, 785
AoxI	GGCC	2 cut(s)	144, 484
ApeKI	GCWGC	3 cut(s)	202, 335, 554
ApoI	RAATTY	1 cut(s)	778
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	1 cut(s)	885
AspS9I	GGNCC	3 cut(s)	71, 235, 398
AsuC2I	CCSGG	2 cut(s)	786, 787
AsuHPI	GGTGA	1 cut(s)	770
AvaI	CYCGRG	2 cut(s)	347, 785
AvaII	GGWCC	3 cut(s)	71, 235, 398
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	923
BbvI	GCAGC	3 cut(s)	189, 347, 541
BciT130I	CCWGG	4 cut(s)	396, 462, 609, 755
BcnI	CCSGG	2 cut(s)	786, 787
BcoDI	GTCTC	1 cut(s)	736
BfaI	CTAG	1 cut(s)	374
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	4 cut(s)	203, 336, 487, 555
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	204, 337, 488, 556
Bme1390I	CCNGG	6 cut(s)	396, 462, 609, 755, 786, 787
Bme18I	GGWCC	3 cut(s)	71, 235, 398
BmeT110I	CYCGRG	2 cut(s)	347, 785
BmgT120I	GGNCC	3 cut(s)	71, 235, 398
BmiI	GGNNCC	4 cut(s)	128, 400, 459, 546
BmrFI	CCNGG	6 cut(s)	396, 462, 609, 755, 786, 787
BmsI	GCATC	3 cut(s)	256, 387, 650
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	2 cut(s)	558, 923
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	786, 787
BsaJI	CCNNGG	5 cut(s)	141, 461, 608, 754, 785
Bse3DI	GCAATG	1 cut(s)	852
BseBI	CCWGG	4 cut(s)	396, 462, 609, 755
BseDI	CCNNGG	5 cut(s)	141, 461, 608, 754, 785
BseGI	GGATG	2 cut(s)	271, 378
BseMI	GCAATG	1 cut(s)	852
BseMII	CTCAG	6 cut(s)	189, 201, 630, 747, 783, 937
BseXI	GCAGC	3 cut(s)	189, 347, 541
BshFI	GGCC	2 cut(s)	146, 486
BshNI	GGYRCC	1 cut(s)	126
BsiHKCI	CYCGRG	2 cut(s)	347, 785
BsiSI	CCGG	1 cut(s)	786
BslFI	GGGAC	2 cut(s)	384, 802
BsmAI	GTCTC	1 cut(s)	736
BsmFI	GGGAC	2 cut(s)	384, 802
BsnI	GGCC	2 cut(s)	146, 486
BsoBI	CYCGRG	2 cut(s)	347, 785
Bsp143I	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	4 cut(s)	352, 470, 487, 605
BspANI	GGCC	2 cut(s)	146, 486
BspCNI	CTCAG	6 cut(s)	190, 202, 629, 746, 784, 936
BspLI	GGNNCC	4 cut(s)	128, 400, 459, 546
BspPI	GGATC	4 cut(s)	319, 570, 581, 716
BspT107I	GGYRCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	852
BssECI	CCNNGG	5 cut(s)	141, 461, 608, 754, 785
BssMI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	4 cut(s)	396, 462, 609, 755
Bst4CI	ACNGT	2 cut(s)	406, 703
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	7 cut(s)	198, 210, 558, 616, 733, 792, 923
BstDSI	CCRYGG	1 cut(s)	141
BstF5I	GGATG	2 cut(s)	271, 378
BstKTI	GATC	6 cut(s)	314, 565, 589, 628, 724, 809
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	4 cut(s)	396, 462, 609, 755
BstNSI	RCATGY	1 cut(s)	827
BstSCI	CCNGG	6 cut(s)	394, 460, 607, 753, 784, 785
BstV1I	GCAGC	3 cut(s)	189, 347, 541
BstX2I	RGATCY	2 cut(s)	311, 625
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	311, 625
BsuRI	GGCC	2 cut(s)	146, 486
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	271, 378
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	3 cut(s)	402, 708, 743
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	71, 235, 398
Cfr9I	CCCGGG	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	8 cut(s)	50, 95, 120, 142, 388, 574, 824, 932
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	7 cut(s)	198, 210, 558, 616, 733, 792, 923
DpnI	GATC	6 cut(s)	313, 564, 588, 627, 723, 808
DpnII	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
DraIII	CACNNNGTG	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	144, 484
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	485
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	71, 235, 398
Eco57I	CTGAAG	1 cut(s)	450
Eco88I	CYCGRG	2 cut(s)	347, 785
EcoO109I	RGGNCCY	2 cut(s)	235, 398
EcoRII	CCWGG	4 cut(s)	394, 460, 607, 753
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	1 cut(s)	643
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	8 cut(s)	53, 98, 123, 145, 391, 577, 827, 935
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FaqI	GGGAC	2 cut(s)	384, 802
FatI	CATG	8 cut(s)	49, 94, 119, 141, 387, 573, 823, 931
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	203, 336, 487, 555
FokI	GGATG	2 cut(s)	278, 365
Fsp4HI	GCNGC	4 cut(s)	203, 336, 487, 555
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	4 cut(s)	203, 336, 487, 555
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	146, 486
HapII	CCGG	1 cut(s)	786
Hin1II	CATG	8 cut(s)	53, 98, 123, 145, 391, 577, 827, 935
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	435, 663
HpaII	CCGG	1 cut(s)	786
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	199, 619, 941
Hpy188III	TCNNGA	7 cut(s)	104, 347, 428, 534, 566, 660, 890
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	425, 854, 859
HpyCH4III	ACNGT	2 cut(s)	406, 703
HpyCH4V	TGCA	6 cut(s)	94, 180, 299, 641, 857, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	7 cut(s)	198, 210, 558, 616, 733, 792, 923
Hsp92II	CATG	8 cut(s)	53, 98, 123, 145, 391, 577, 827, 935
Kzo9I	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
LmnI	GCTCC	2 cut(s)	457, 742
Lsp1109I	GCAGC	3 cut(s)	189, 347, 541
LweI	GCATC	3 cut(s)	256, 387, 650
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	866
MalI	GATC	6 cut(s)	313, 564, 588, 627, 723, 808
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
MboII	GAAGA	4 cut(s)	413, 416, 520, 635
MfeI	CAATTG	2 cut(s)	165, 276
MflI	RGATCY	2 cut(s)	311, 625
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	5 cut(s)	60, 165, 276, 778, 897
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	235, 764
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	885
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	698, 776, 900
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	2 cut(s)	209, 338
MspI	CCGG	1 cut(s)	786
MspR9I	CCNGG	6 cut(s)	396, 462, 609, 755, 786, 787
MunI	CAATTG	2 cut(s)	165, 276
MvaI	CCWGG	4 cut(s)	396, 462, 609, 755
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	2 cut(s)	786, 787
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
NlaIII	CATG	8 cut(s)	53, 98, 123, 145, 391, 577, 827, 935
NlaIV	GGNNCC	4 cut(s)	128, 400, 459, 546
NmuCI	GTSAC	1 cut(s)	866
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	1 cut(s)	827
PciI	ACATGT	1 cut(s)	823
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	435, 663
PkrI	GCNGC	4 cut(s)	204, 337, 488, 556
PpuMI	RGGWCCY	2 cut(s)	235, 398
PscI	ACATGT	1 cut(s)	823
PshBI	ATTAAT	1 cut(s)	900
Psp5II	RGGWCCY	2 cut(s)	235, 398
Psp6I	CCWGG	4 cut(s)	394, 460, 607, 753
PspGI	CCWGG	4 cut(s)	394, 460, 607, 753
PspN4I	GGNNCC	4 cut(s)	128, 400, 459, 546
PspPI	GGNCC	3 cut(s)	71, 235, 398
PspPPI	RGGWCCY	2 cut(s)	235, 398
PsuI	RGATCY	2 cut(s)	311, 625
PvuII	CAGCTG	2 cut(s)	209, 338
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	698, 776, 900
SatI	GCNGC	4 cut(s)	203, 336, 487, 555
Sau3AI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
Sau96I	GGNCC	3 cut(s)	71, 235, 398
ScrFI	CCNGG	6 cut(s)	396, 462, 609, 755, 786, 787
SfaNI	GCATC	3 cut(s)	256, 387, 650
SinI	GGWCC	3 cut(s)	71, 235, 398
SmaI	CCCGGG	1 cut(s)	787
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	60, 165, 276, 778, 897
SsiI	CCGC	4 cut(s)	352, 470, 487, 605
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	6 cut(s)	394, 460, 607, 753, 784, 785
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	406, 703
TasI	AATT	5 cut(s)	60, 165, 276, 778, 897
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	435, 663
Tru1I	TTAA	3 cut(s)	698, 776, 900
Tru9I	TTAA	3 cut(s)	698, 776, 900
TscAI	CASTG	3 cut(s)	409, 708, 750
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	3 cut(s)	202, 335, 554
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	4 cut(s)	38, 376, 833, 841
TspGWI	ACGGA	1 cut(s)	656
TspMI	CCCGGG	1 cut(s)	785
TspRI	CASTG	3 cut(s)	409, 708, 750
VpaK11BI	GGWCC	3 cut(s)	71, 235, 398
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	1 cut(s)	778
XceI	RCATGY	1 cut(s)	827
XmaI	CCCGGG	1 cut(s)	785
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.