Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016963.1

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

12612 .. 14533

Gene Structure 1922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016963.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atggaaaagattgagcataagtatgtggaggtagaaggactaaagcttcatgtggctgaaattggaagtggtccaaaggtggtggttttcttgcatggatttccagaaatatggtactcatggaggcaccaaatgattgctgtggccaacaatggctatcgggcaatttcctatgattgcaggggatatggactttctgagctgccagctgagcctgaaaaggcaactttcaaggacctcgttgacgaggttgttgtagttttggatgctttggagccagggagggcagaagcagattttggccgctttgatgtcaagtcggtggtaaggaacatctacattctcttctccagaagtgaggttccaatagctgctaaggatcaagaaatcatggatttgtttgatccagctattcctctaccgccagggttctcagaggaagatctttcagtctatgcatctctgtatgagaagagtttaacagtggattgtggttatactgatccaaaagtctcagctccaacactggttatccagggtgagaaagactacctcttaaattttcccgggactgaggacaacatacgatctggggtaatgaaacatgttgtgcctgatttggacattaccttcattgcagaagggggtcactttgtgcaagaacaacttccagagaaaattaatgagctaatcctcactttcctcagcaaacatggtatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

240

Amino Acids

26.87

Weight (kDa)

4.75

Isoelectric Point (pI)

39.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	2 cut(s)	304, 422
AclWI	GGATC	3 cut(s)	387, 398, 497
AcoI	YGGCCR	2 cut(s)	144, 301
AcsI	RAATTY	1 cut(s)	559
AdeI	CACNNNGTG	1 cut(s)	655
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	277, 424, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	7 cut(s)	46, 202, 209, 371, 410, 518, 688
AluI	AGCT	7 cut(s)	46, 202, 209, 371, 410, 518, 688
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	3 cut(s)	387, 398, 497
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	2 cut(s)	144, 301
ApeKI	GCWGC	2 cut(s)	202, 371
ApoI	RAATTY	1 cut(s)	559
AseI	ATTAAT	1 cut(s)	681
Asp700I	GAANNNNTTC	1 cut(s)	666
AspS9I	GGNCC	2 cut(s)	71, 235
AsuC2I	CCSGG	2 cut(s)	567, 568
AsuHPI	GGTGA	1 cut(s)	551
AvaI	CYCGRG	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	71, 235
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	704
BbvI	GCAGC	2 cut(s)	189, 358
BciT130I	CCWGG	3 cut(s)	279, 426, 536
BcnI	CCSGG	2 cut(s)	567, 568
BcoDI	GTCTC	1 cut(s)	517
BglII	AGATCT	1 cut(s)	442
BisI	GCNGC	3 cut(s)	203, 304, 372
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	204, 305, 373
Bme1390I	CCNGG	5 cut(s)	279, 426, 536, 567, 568
Bme18I	GGWCC	2 cut(s)	71, 235
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	2 cut(s)	71, 235
BmiI	GGNNCC	3 cut(s)	128, 276, 363
BmrFI	CCNGG	5 cut(s)	279, 426, 536, 567, 568
BmsI	GCATC	2 cut(s)	256, 467
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	2 cut(s)	375, 704
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	567, 568
BsaJI	CCNNGG	4 cut(s)	278, 425, 535, 566
Bse1I	ACTGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	3 cut(s)	279, 426, 536
BseDI	CCNNGG	4 cut(s)	278, 425, 535, 566
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	6 cut(s)	189, 201, 447, 528, 564, 718
BseNI	ACTGG	1 cut(s)	531
BseXI	GCAGC	2 cut(s)	189, 358
BshFI	GGCC	2 cut(s)	146, 303
BshNI	GGYRCC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	566
BsiSI	CCGG	1 cut(s)	567
BslFI	GGGAC	1 cut(s)	583
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	146, 303
BsoBI	CYCGRG	1 cut(s)	566
Bsp143I	GATC	5 cut(s)	379, 403, 442, 502, 587
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	304, 422
BspANI	GGCC	2 cut(s)	146, 303
BspCNI	CTCAG	6 cut(s)	190, 202, 446, 527, 565, 717
BspLI	GGNNCC	3 cut(s)	128, 276, 363
BspPI	GGATC	3 cut(s)	387, 398, 497
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	531
BssECI	CCNNGG	4 cut(s)	278, 425, 535, 566
BssMI	GATC	5 cut(s)	379, 403, 442, 502, 587
Bst2UI	CCWGG	3 cut(s)	279, 426, 536
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	2 cut(s)	350, 467
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	7 cut(s)	198, 210, 375, 433, 514, 573, 704
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	382, 406, 445, 505, 590
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	5 cut(s)	379, 403, 442, 502, 587
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	3 cut(s)	279, 426, 536
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	5 cut(s)	277, 424, 534, 565, 566
BstV1I	GCAGC	2 cut(s)	189, 358
BstX2I	RGATCY	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	146, 303
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	2 cut(s)	489, 524
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	2 cut(s)	71, 235
Cfr9I	CCCGGG	1 cut(s)	566
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	6 cut(s)	50, 95, 120, 391, 605, 713
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	7 cut(s)	198, 210, 375, 433, 514, 573, 704
DpnI	GATC	5 cut(s)	381, 405, 444, 504, 589
DpnII	GATC	5 cut(s)	379, 403, 442, 502, 587
DraIII	CACNNNGTG	1 cut(s)	655
EaeI	YGGCCR	2 cut(s)	144, 301
Eam1104I	CTCTTC	2 cut(s)	350, 467
EarI	CTCTTC	2 cut(s)	350, 467
Eco47I	GGWCC	2 cut(s)	71, 235
Eco88I	CYCGRG	1 cut(s)	566
EcoO109I	RGGNCCY	1 cut(s)	235
EcoRII	CCWGG	3 cut(s)	277, 424, 534
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	6 cut(s)	53, 98, 123, 394, 608, 716
FalI	AAGNNNNNCTT	2 cut(s)	651, 683
FaqI	GGGAC	1 cut(s)	583
FatI	CATG	6 cut(s)	49, 94, 119, 390, 604, 712
Fnu4HI	GCNGC	3 cut(s)	203, 304, 372
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	203, 304, 372
GluI	GCNGC	3 cut(s)	203, 304, 372
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	146, 303
HapII	CCGG	1 cut(s)	567
Hin1II	CATG	6 cut(s)	53, 98, 123, 394, 608, 716
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	44
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	1 cut(s)	551
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	199, 436, 722
Hpy188III	TCNNGA	4 cut(s)	104, 351, 383, 671
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	29, 635, 640
HpyCH4III	ACNGT	1 cut(s)	484
HpyCH4V	TGCA	5 cut(s)	94, 180, 458, 638, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	7 cut(s)	198, 210, 375, 433, 514, 573, 704
Hsp92II	CATG	6 cut(s)	53, 98, 123, 394, 608, 716
Kzo9I	GATC	5 cut(s)	379, 403, 442, 502, 587
LmnI	GCTCC	2 cut(s)	274, 523
Lsp1109I	GCAGC	2 cut(s)	189, 358
LweI	GCATC	2 cut(s)	256, 467
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	5 cut(s)	381, 405, 444, 504, 589
MboI	GATC	5 cut(s)	379, 403, 442, 502, 587
MboII	GAAGA	3 cut(s)	337, 452, 484
MflI	RGATCY	1 cut(s)	442
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	4 cut(s)	60, 165, 559, 678
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	545
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	479, 557, 681
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	567
MspR9I	CCNGG	5 cut(s)	279, 426, 536, 567, 568
MvaI	CCWGG	3 cut(s)	279, 426, 536
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	2 cut(s)	567, 568
NdeII	GATC	5 cut(s)	379, 403, 442, 502, 587
NlaIII	CATG	6 cut(s)	53, 98, 123, 394, 608, 716
NlaIV	GGNNCC	3 cut(s)	128, 276, 363
NmuCI	GTSAC	1 cut(s)	647
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	1 cut(s)	608
PciI	ACATGT	1 cut(s)	604
PdmI	GAANNNNTTC	1 cut(s)	666
PkrI	GCNGC	3 cut(s)	204, 305, 373
PpuMI	RGGWCCY	1 cut(s)	235
PscI	ACATGT	1 cut(s)	604
PshBI	ATTAAT	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	235
Psp6I	CCWGG	3 cut(s)	277, 424, 534
PspGI	CCWGG	3 cut(s)	277, 424, 534
PspN4I	GGNNCC	3 cut(s)	128, 276, 363
PspPI	GGNCC	2 cut(s)	71, 235
PspPPI	RGGWCCY	1 cut(s)	235
PsuI	RGATCY	1 cut(s)	442
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	479, 557, 681
SatI	GCNGC	3 cut(s)	203, 304, 372
Sau3AI	GATC	5 cut(s)	379, 403, 442, 502, 587
Sau96I	GGNCC	2 cut(s)	71, 235
ScrFI	CCNGG	5 cut(s)	279, 426, 536, 567, 568
SfaNI	GCATC	2 cut(s)	256, 467
SinI	GGWCC	2 cut(s)	71, 235
SmaI	CCCGGG	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	60, 165, 559, 678
SsiI	CCGC	2 cut(s)	304, 422
StyD4I	CCNGG	5 cut(s)	277, 424, 534, 565, 566
TaaI	ACNGT	1 cut(s)	484
TasI	AATT	4 cut(s)	60, 165, 559, 678
TauI	GCSGC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	479, 557, 681
Tru9I	TTAA	3 cut(s)	479, 557, 681
TscAI	CASTG	2 cut(s)	489, 531
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	2 cut(s)	202, 371
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	3 cut(s)	38, 614, 622
TspMI	CCCGGG	1 cut(s)	566
TspRI	CASTG	2 cut(s)	489, 531
VpaK11BI	GGWCC	2 cut(s)	71, 235
VspI	ATTAAT	1 cut(s)	681
XapI	RAATTY	1 cut(s)	559
XceI	RCATGY	1 cut(s)	608
XmaI	CCCGGG	1 cut(s)	566
XmnI	GAANNNNTTC	1 cut(s)	666
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.