Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

89740414 .. 89742732

Gene Structure 2319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00068570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAAAGTTGTATGAGAAATTTGGTTTCCAAACCGCATTGCAACCTCCATATAGCTGATTCCACTATTGAAGTTCCAGCGCTTTTCATAATGGGAAAAAAGGATTATGTATACGAAGTTCCAGGGATGAAAGATTACATAGACAGTGATCAACTGAAAGAGTTTGTCCCGGATTTGGAGATTGTATTTCTGCCAGAAGGAACACATTTTGTTCATGAACAATTACCTGACCAGGTTAAGGAGCTCATCCTCACCTTCCTCCGAAAGCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

91

Amino Acids

10.59

Weight (kDa)

5.19

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	19
AfeI	AGCGCT	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	175, 238
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	121, 231
AluBI	AGCT	2 cut(s)	56, 244
AluI	AGCT	2 cut(s)	56, 244
Alw21I	GWGCWC	1 cut(s)	246
Aor51HI	AGCGCT	1 cut(s)	81
ApoI	RAATTY	1 cut(s)	19
AspLEI	GCGC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BciT130I	CCWGG	2 cut(s)	123, 233
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	170
BfoI	RGCGCY	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	123, 170, 233
BmrFI	CCNGG	3 cut(s)	123, 170, 233
BpuMI	CCSGG	1 cut(s)	170
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 238
Bse3DI	GCAATG	1 cut(s)	37
BseBI	CCWGG	2 cut(s)	123, 233
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	132, 246
BseLI	CCNNNNNNNGG	2 cut(s)	175, 238
BseMI	GCAATG	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	175, 238
BsmFI	GGGAC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	1 cut(s)	35
BspHI	TCATGA	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	37
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	148
BssNAI	GTATAC	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	123, 233
Bst4CI	ACNGT	1 cut(s)	146
BstF5I	GGATG	2 cut(s)	132, 246
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstNI	CCWGG	2 cut(s)	123, 233
BstSCI	CCNGG	3 cut(s)	121, 168, 231
BstZ17I	GTATAC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	132, 246
BtsIMutI	CAGTG	1 cut(s)	151
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	1 cut(s)	82
CsiI	ACCWGGT	1 cut(s)	231
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	2 cut(s)	56, 244
CviKI_1	RGCY	2 cut(s)	56, 244
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco47III	AGCGCT	1 cut(s)	81
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	121, 231
EcoT38I	GRGCYC	1 cut(s)	246
FaeI	CATG	1 cut(s)	218
FaiI	YATR	8 cut(s)	14, 51, 53, 89, 108, 112, 140, 216
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	111
FokI	GGATG	2 cut(s)	139, 233
FriOI	GRGCYC	1 cut(s)	246
GlaI	GCGC	1 cut(s)	81
HaeII	RGCGCY	1 cut(s)	83
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	170
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	1 cut(s)	263
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	191, 265
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	90, 108, 135, 183, 207, 218, 240, 245
MabI	ACCWGGT	1 cut(s)	231
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	2 cut(s)	19, 221
MnlI	CCTC	3 cut(s)	56, 260, 269
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	3 cut(s)	123, 170, 233
MvaI	CCWGG	2 cut(s)	123, 233
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	1 cut(s)	218
PagI	TCATGA	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	59
PfoI	TCCNGGA	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	121, 231
PspGI	CCWGG	2 cut(s)	121, 231
PsrI	GAACNNNNNNTAC	2 cut(s)	102, 134
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	123, 170, 233
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	6 cut(s)	48, 58, 229, 237, 246, 257
SexAI	ACCWGGT	1 cut(s)	231
Sse9I	AATT	2 cut(s)	19, 221
SsiI	CCGC	1 cut(s)	35
SstI	GAGCTC	1 cut(s)	246
StyD4I	CCNGG	3 cut(s)	121, 168, 231
TaaI	ACNGT	1 cut(s)	146
TasI	AATT	2 cut(s)	19, 221
TfiI	GAWTC	1 cut(s)	59
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	76, 143, 203, 231
TspRI	CASTG	1 cut(s)	151
XapI	RAATTY	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.