Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

35454190 .. 35457716

Gene Structure 3527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAACTATGATTTCCTGTATCGATCTGAGCACTATTCCTGGGGAATAAGTGCAGGCTATGGATATGAATCATTATGGGGAGTGTGTAAGAATGCTCATTCCACACCTAGGCAAGGTCCAAAGGTGGTGGTTTTCTTGCATGGATTTCCAGAAATATGGTACTCATGGAGGCACCAAATGATTGCTGTGGCCAACAATGGCTATCGGGCAATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCTGCCAGCTGAGCCTGAAAAGGCAACTTTCAAGGACCTCGTTGACGAGGTTGTTGTAGTTTTGGATGCTTTGGTAATTGACAAGCTAGCTGGTGTTATATCACTAGGTACCCCTTTCATGCTTCCAGGTCCCACTGCTGTCCAAAATCATATTCTTCCTGAAGGATTCTACATATCAAGGTGGCAGGAGCCAGGGAGGGCAGAAGCAGATTTTGGCCGCTTTGATGTCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTTCCAATAGCTGCTAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTACCGCCAGGGTTCTCAGAGGAAGATCTTTCAGTCTATGCATCTCTGTATGAGAAGTCTGGATTCCGTTTTCCTTTGAGAGTTCCATATAGACTACCTCTTAAATTTCCCGGGACTGAGGACTACATACGATCTGGGGTAATGAAACATGTTGTGCCTGATTTGGACATTACCTTCATTGCAGAAGGGGGTCACTTTGTGCAAGAACAACTTCCAGAGAAAATTAATGAGCTAATCCTCACTTTCCTCAGCAAACATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

280

Amino Acids

31.69

Weight (kDa)

5.4

Isoelectric Point (pI)

47.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	41 - 107	6e-06	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	42 - 120	5.2e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	43 - 269	9e-09	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	2 cut(s)	171, 353
AciI	CCGC	2 cut(s)	463, 581
AclWI	GGATC	2 cut(s)	546, 557
AcoI	YGGCCR	2 cut(s)	189, 460
AcsI	RAATTY	1 cut(s)	680
AcuI	CTGAAG	1 cut(s)	426
AdeI	CACNNNGTG	1 cut(s)	775
AfaI	GTAC	2 cut(s)	161, 355
AfiI	CCNNNNNNNGG	2 cut(s)	108, 113
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	1 cut(s)	277
AjnI	CCWGG	4 cut(s)	38, 370, 436, 583
AjuI	GAANNNNNNNTTGG	4 cut(s)	381, 413, 441, 473
AluBI	AGCT	7 cut(s)	247, 254, 331, 335, 530, 569, 808
AluI	AGCT	7 cut(s)	247, 254, 331, 335, 530, 569, 808
Alw21I	GWGCWC	1 cut(s)	33
AlwI	GGATC	2 cut(s)	546, 557
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	189, 460
ApeKI	GCWGC	2 cut(s)	247, 530
ApoI	RAATTY	1 cut(s)	680
AseI	ATTAAT	1 cut(s)	801
Asp700I	GAANNNNTTC	1 cut(s)	786
Asp718I	GGTACC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	116, 280, 374
AsuC2I	CCSGG	2 cut(s)	687, 688
AsuNHI	GCTAGC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	3 cut(s)	116, 280, 374
AvrII	CCTAGG	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	191
BanI	GGYRCC	2 cut(s)	171, 353
Bbv12I	GWGCWC	1 cut(s)	33
BbvCI	CCTCAGC	1 cut(s)	824
BbvI	GCAGC	2 cut(s)	234, 517
BciT130I	CCWGG	4 cut(s)	40, 372, 438, 585
BcnI	CCSGG	2 cut(s)	687, 688
BfaI	CTAG	3 cut(s)	108, 332, 350
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	3 cut(s)	248, 463, 531
BlnI	CCTAGG	1 cut(s)	107
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	3 cut(s)	249, 464, 532
Bme1390I	CCNGG	6 cut(s)	40, 372, 438, 585, 687, 688
Bme18I	GGWCC	3 cut(s)	116, 280, 374
BmeT110I	CYCGRG	1 cut(s)	686
BmgT120I	GGNCC	3 cut(s)	116, 280, 374
BmiI	GGNNCC	5 cut(s)	173, 355, 376, 435, 522
BmrFI	CCNGG	6 cut(s)	40, 372, 438, 585, 687, 688
BmsI	GCATC	2 cut(s)	301, 626
BmtI	GCTAGC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	493
Bpu10I	CCTNAGC	2 cut(s)	534, 824
Bpu1102I	GCTNAGC	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	687, 688
Bsa29I	ATCGAT	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	67
BsaJI	CCNNGG	5 cut(s)	39, 107, 437, 584, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 113
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	4 cut(s)	40, 372, 438, 585
BseCI	ATCGAT	1 cut(s)	22
BseDI	CCNNGG	5 cut(s)	39, 107, 437, 584, 686
BseGI	GGATG	1 cut(s)	316
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	108, 113
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	6 cut(s)	18, 234, 246, 606, 684, 838
BseXI	GCAGC	2 cut(s)	234, 517
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	191, 462
BshNI	GGYRCC	2 cut(s)	171, 353
BshVI	ATCGAT	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	33
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	1 cut(s)	687
BslFI	GGGAC	2 cut(s)	360, 703
BslI	CCNNNNNNNGG	2 cut(s)	108, 113
BsmFI	GGGAC	2 cut(s)	360, 703
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	2 cut(s)	191, 462
BsoBI	CYCGRG	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	5 cut(s)	23, 538, 562, 601, 707
Bsp1720I	GCTNAGC	1 cut(s)	255
BspACI	CCGC	2 cut(s)	463, 581
BspANI	GGCC	2 cut(s)	191, 462
BspCNI	CTCAG	6 cut(s)	19, 235, 247, 605, 685, 837
BspDI	ATCGAT	1 cut(s)	22
BspLI	GGNNCC	5 cut(s)	173, 355, 376, 435, 522
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	546, 557
BspT107I	GGYRCC	2 cut(s)	171, 353
BsrDI	GCAATG	1 cut(s)	753
BssECI	CCNNGG	5 cut(s)	39, 107, 437, 584, 686
BssMI	GATC	5 cut(s)	23, 538, 562, 601, 707
BssT1I	CCWWGG	1 cut(s)	107
Bst2UI	CCWGG	4 cut(s)	40, 372, 438, 585
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	3 cut(s)	55, 252, 333
BstDEI	CTNAG	7 cut(s)	27, 243, 255, 534, 592, 693, 824
BstENI	CCTNNNNNAGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	5 cut(s)	26, 541, 565, 604, 710
BstMBI	GATC	5 cut(s)	23, 538, 562, 601, 707
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	4 cut(s)	40, 372, 438, 585
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	6 cut(s)	38, 370, 436, 583, 685, 686
BstV1I	GCAGC	2 cut(s)	234, 517
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	601
Bsu15I	ATCGAT	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	191, 462
BsuTUI	ATCGAT	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	316
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	3 cut(s)	55, 252, 333
Cfr13I	GGNCC	3 cut(s)	116, 280, 374
Cfr9I	CCCGGG	1 cut(s)	686
ClaI	ATCGAT	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	160, 354
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	6 cut(s)	140, 165, 364, 550, 725, 833
CviQI	GTAC	2 cut(s)	160, 354
DdeI	CTNAG	7 cut(s)	27, 243, 255, 534, 592, 693, 824
DpnI	GATC	5 cut(s)	25, 540, 564, 603, 709
DpnII	GATC	5 cut(s)	23, 538, 562, 601, 707
DraIII	CACNNNGTG	1 cut(s)	775
EaeI	YGGCCR	2 cut(s)	189, 460
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	3 cut(s)	116, 280, 374
Eco57I	CTGAAG	1 cut(s)	426
Eco88I	CYCGRG	1 cut(s)	686
EcoNI	CCTNNNNNAGG	1 cut(s)	111
EcoO109I	RGGNCCY	2 cut(s)	280, 374
EcoRII	CCWGG	4 cut(s)	38, 370, 436, 583
EcoT14I	CCWWGG	1 cut(s)	107
EcoT22I	ATGCAT	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	6 cut(s)	143, 168, 367, 553, 728, 836
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	2 cut(s)	360, 703
FatI	CATG	6 cut(s)	139, 164, 363, 549, 724, 832
Fnu4HI	GCNGC	3 cut(s)	248, 463, 531
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	3 cut(s)	248, 463, 531
FspBI	CTAG	3 cut(s)	108, 332, 350
GluI	GCNGC	3 cut(s)	248, 463, 531
GsuI	CTGGAG	1 cut(s)	493
HaeIII	GGCC	2 cut(s)	191, 462
HapII	CCGG	1 cut(s)	687
Hin1II	CATG	6 cut(s)	143, 168, 367, 553, 728, 836
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	3 cut(s)	68, 411, 639
HpaII	CCGG	1 cut(s)	687
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	4 cut(s)	28, 244, 595, 842
Hpy188III	TCNNGA	6 cut(s)	149, 404, 510, 542, 636, 791
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	401, 755, 760
HpyCH4V	TGCA	6 cut(s)	53, 139, 225, 617, 758, 778
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	7 cut(s)	27, 243, 255, 534, 592, 693, 824
Hsp92II	CATG	6 cut(s)	143, 168, 367, 553, 728, 836
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	5 cut(s)	23, 538, 562, 601, 707
LmnI	GCTCC	1 cut(s)	433
Lsp1109I	GCAGC	2 cut(s)	234, 517
LweI	GCATC	2 cut(s)	301, 626
MaeI	CTAG	3 cut(s)	108, 332, 350
MaeIII	GTNAC	1 cut(s)	767
MalI	GATC	5 cut(s)	25, 540, 564, 603, 709
MboI	GATC	5 cut(s)	23, 538, 562, 601, 707
MboII	GAAGA	3 cut(s)	392, 496, 611
MfeI	CAATTG	1 cut(s)	210
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	1 cut(s)	33
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	4 cut(s)	210, 321, 680, 798
MluNI	TGGCCA	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	191
Mph1103I	ATGCAT	1 cut(s)	619
MroXI	GAANNNNTTC	1 cut(s)	786
MscI	TGGCCA	1 cut(s)	191
MseI	TTAA	2 cut(s)	678, 801
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	254
MspI	CCGG	1 cut(s)	687
MspR9I	CCNGG	6 cut(s)	40, 372, 438, 585, 687, 688
MunI	CAATTG	1 cut(s)	210
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	4 cut(s)	40, 372, 438, 585
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	2 cut(s)	687, 688
NdeII	GATC	5 cut(s)	23, 538, 562, 601, 707
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	6 cut(s)	143, 168, 367, 553, 728, 836
NlaIV	GGNNCC	5 cut(s)	173, 355, 376, 435, 522
NmuCI	GTSAC	1 cut(s)	767
NsiI	ATGCAT	1 cut(s)	619
NspI	RCATGY	1 cut(s)	728
PciI	ACATGT	1 cut(s)	724
PctI	GAATGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	3 cut(s)	68, 411, 639
PkrI	GCNGC	3 cut(s)	249, 464, 532
PpuMI	RGGWCCY	2 cut(s)	280, 374
PscI	ACATGT	1 cut(s)	724
PshBI	ATTAAT	1 cut(s)	801
Psp5II	RGGWCCY	2 cut(s)	280, 374
Psp6I	CCWGG	4 cut(s)	38, 370, 436, 583
PspGI	CCWGG	4 cut(s)	38, 370, 436, 583
PspN4I	GGNNCC	5 cut(s)	173, 355, 376, 435, 522
PspPI	GGNCC	3 cut(s)	116, 280, 374
PspPPI	RGGWCCY	2 cut(s)	280, 374
PsuI	RGATCY	1 cut(s)	601
PvuII	CAGCTG	1 cut(s)	254
RsaI	GTAC	2 cut(s)	161, 355
RsaNI	GTAC	2 cut(s)	160, 354
SaqAI	TTAA	2 cut(s)	678, 801
SatI	GCNGC	3 cut(s)	248, 463, 531
Sau3AI	GATC	5 cut(s)	23, 538, 562, 601, 707
Sau96I	GGNCC	3 cut(s)	116, 280, 374
ScrFI	CCNGG	6 cut(s)	40, 372, 438, 585, 687, 688
SduI	GDGCHC	1 cut(s)	33
SfaNI	GCATC	2 cut(s)	301, 626
SinI	GGWCC	3 cut(s)	116, 280, 374
SmaI	CCCGGG	1 cut(s)	688
Sse9I	AATT	4 cut(s)	210, 321, 680, 798
SsiI	CCGC	2 cut(s)	463, 581
SspMI	CTAG	3 cut(s)	108, 332, 350
StyD4I	CCNGG	6 cut(s)	38, 370, 436, 583, 685, 686
StyI	CCWWGG	1 cut(s)	107
TaqI	TCGA	1 cut(s)	22
TasI	AATT	4 cut(s)	210, 321, 680, 798
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	68, 411, 639
Tru1I	TTAA	2 cut(s)	678, 801
Tru9I	TTAA	2 cut(s)	678, 801
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	767
TseI	GCWGC	2 cut(s)	247, 530
Tsp45I	GTSAC	1 cut(s)	767
TspDTI	ATGAA	5 cut(s)	17, 81, 352, 734, 742
TspGWI	ACGGA	1 cut(s)	632
TspMI	CCCGGG	1 cut(s)	686
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	3 cut(s)	116, 280, 374
VspI	ATTAAT	1 cut(s)	801
XagI	CCTNNNNNAGG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	680
XceI	RCATGY	1 cut(s)	728
XmaI	CCCGGG	1 cut(s)	686
XmaJI	CCTAGG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	3 cut(s)	108, 332, 350
Zsp2I	ATGCAT	1 cut(s)	619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.