RchiOBHm_Chr4g0406161

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
27215758 .. 27216670
913 bp
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UTR
Exon/CDS
Intron
PRQ37755

Sequence Viewer

Length: 369 bp
ATGGATTTGTTTGATCCAGCTATTCCTCTACCACCATGGTTCTCTGAAGAAGATCTTTCAGTCTATGCATCTCTTTATGAGAAGTCTGGATTCCGTTTTCCATTGCAAATTCCATACAGGAGTTTAGCAGTGGACTGCGGTTATACTGATCCAAAAGTCTCTGCTCCAACACTGCTTATCATGGGTGAGAAAGACTACATCTTAAAGATTTCGGGGTTTGGAGATTACATACGAACTGGGGCAGTGAAGCAATTTGTGCCTGATTTGGACATTAAATACATTGCAGAAGGGAATCATTTCATGCAAGAACAACTTCCAGAGCAAATTAATCAGCTAATTCTCACTTTTCTTGGAAAACATGGGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

4.72

Isoelectric Point (pI)

31.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 2 cut(s) 8, 143
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 1 cut(s) 66
AluBI AGCT 2 cut(s) 20, 334
AluI AGCT 2 cut(s) 20, 334
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 8, 143
ApoI RAATTY 1 cut(s) 108
AseI ATTAAT 1 cut(s) 327
Asp700I GAANNNNTTC 2 cut(s) 296, 312
AsuHPI GGTGA 1 cut(s) 197
BcoDI GTCTC 1 cut(s) 163
BglII AGATCT 1 cut(s) 52
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 77
BmuI ACTGGG 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 101, 279
BseDI CCNNGG 1 cut(s) 35
BseMI GCAATG 2 cut(s) 101, 279
BseNI ACTGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 163
Bsp143I GATC 4 cut(s) 13, 52, 148, 363
Bsp19I CCATGG 1 cut(s) 35
BspACI CCGC 1 cut(s) 138
BspPI GGATC 2 cut(s) 8, 143
BsrDI GCAATG 2 cut(s) 101, 279
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 4 cut(s) 13, 52, 148, 363
BssT1I CCWWGG 1 cut(s) 35
BstAPI GCANNNNNTGC 1 cut(s) 256
BstDSI CCRYGG 1 cut(s) 35
BstKTI GATC 4 cut(s) 16, 55, 151, 366
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 4 cut(s) 13, 52, 148, 363
BstMWI GCNNNNNNNGC 1 cut(s) 256
BstX2I RGATCY 2 cut(s) 52, 363
BstYI RGATCY 2 cut(s) 52, 363
BtgI CCRYGG 1 cut(s) 35
BtsI GCAGTG 3 cut(s) 135, 170, 249
BtsIMutI CAGTG 3 cut(s) 135, 170, 249
CviAII CATG 4 cut(s) 36, 181, 301, 359
CviJI RGCY 2 cut(s) 20, 334
CviKI_1 RGCY 2 cut(s) 20, 334
DpnI GATC 4 cut(s) 15, 54, 150, 365
DpnII GATC 4 cut(s) 13, 52, 148, 363
Eco130I CCWWGG 1 cut(s) 35
Eco57I CTGAAG 1 cut(s) 66
EcoT14I CCWWGG 1 cut(s) 35
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 4 cut(s) 39, 184, 304, 362
FaiI YATR 9 cut(s) 37, 66, 78, 115, 144, 182, 230, 302, 360
FalI AAGNNNNNCTT 4 cut(s) 39, 71, 297, 329
FatI CATG 4 cut(s) 35, 180, 300, 358
Hin1II CATG 4 cut(s) 39, 184, 304, 362
HinfI GANTC 2 cut(s) 90, 292
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 2 cut(s) 46, 368
Hpy188III TCNNGA 2 cut(s) 87, 317
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 68, 106, 284, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 256
Hsp92II CATG 4 cut(s) 39, 184, 304, 362
Kzo9I GATC 4 cut(s) 13, 52, 148, 363
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 6 cut(s) 30, 72, 103, 222, 273, 330
LweI GCATC 1 cut(s) 77
MalI GATC 4 cut(s) 15, 54, 150, 365
MboI GATC 4 cut(s) 13, 52, 148, 363
MboII GAAGA 2 cut(s) 59, 62
MflI RGATCY 2 cut(s) 52, 363
MluCI AATT 4 cut(s) 108, 251, 324, 336
MmeI TCCRAC 1 cut(s) 191
MnlI CCTC 1 cut(s) 36
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 2 cut(s) 296, 312
MseI TTAA 3 cut(s) 203, 273, 327
MwoI GCNNNNNNNGC 1 cut(s) 256
NcoI CCATGG 1 cut(s) 35
NdeII GATC 4 cut(s) 13, 52, 148, 363
NlaIII CATG 4 cut(s) 39, 184, 304, 362
NsiI ATGCAT 1 cut(s) 70
PdmI GAANNNNTTC 2 cut(s) 296, 312
PfeI GAWTC 2 cut(s) 90, 292
PshBI ATTAAT 1 cut(s) 327
PsuI RGATCY 2 cut(s) 52, 363
SaqAI TTAA 3 cut(s) 203, 273, 327
Sau3AI GATC 4 cut(s) 13, 52, 148, 363
SetI ASST 2 cut(s) 22, 336
SfaNI GCATC 1 cut(s) 77
Sse9I AATT 4 cut(s) 108, 251, 324, 336
SsiI CCGC 1 cut(s) 138
StyI CCWWGG 1 cut(s) 35
TasI AATT 4 cut(s) 108, 251, 324, 336
TfiI GAWTC 2 cut(s) 90, 292
Tru1I TTAA 3 cut(s) 203, 273, 327
Tru9I TTAA 3 cut(s) 203, 273, 327
TscAI CASTG 3 cut(s) 135, 177, 249
TspDTI ATGAA 1 cut(s) 289
TspGWI ACGGA 1 cut(s) 83
TspRI CASTG 3 cut(s) 135, 177, 249
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 108
XmnI GAANNNNTTC 2 cut(s) 296, 312
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.