Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Forward (+)

32084818 .. 32086736

Gene Structure 1919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGAAAAGATTGAGCATAAGTATGTGGAGGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTCCAAAGGTGGTGGTTTTCCTGCATGGATTTCCAGAAATATGGTACTCATGGAGGCACCAAATGATTGCTGTGGCCAACAATGGCTATCGGGCGATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCTGCCAGCTGAGCCTGAAAAGGCAACTTTCAAGGACCTCGTTGACGAGGTTGTTGGAGTTTTGGATGCTTTGGCAATTGACAAGGCTTTCCTTGTTGCAAAGGATTTTGGATCTATAACTGAATACCTCGTAGCTGCTGTCTATCCTGAGCGGGTAGCTGGTGTTATATCACTAGGTATCCCTTTCATGCTTCCAGGTCCCACTGCTGTCCAAAATCATCTTCTTCCTGAAGCATTCTACATATCAAGGTGGCAGGAGCCAGGGAGGGCAGAAACAGATTTTGGCCGCTTTGATATCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTTCCAATAGCTGATAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTACCGCCAGGTTTCTCAGAGGAAGATCTTTCAGTCTATGCATCTCTGAGTTTAACAGTGGATTGTGGTTATACTGATCCAAAAGTCTCAGCTCCAACACTGCTTATCCAGGGTGAGAAAGACTACCTCTTAAATCTTCCCGGGACTGAGGACTACATACGATCTGGGGCAATGAAACATGTTGTGCCTGATTTGGACATTACCTTCATTGCAGAAGGGGGTCACTTTGTGCAAGAACAACTTCCAGAGAAAATTAATGAGCTCATCCACACTTTCCTCAGCAAACATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

299

Amino Acids

33.11

Weight (kDa)

4.84

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	26 - 126	4.3e-09	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	27 - 279	1.5e-21	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	28 - 287	1.2e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	3 cut(s)	352, 487, 605
AclWI	GGATC	4 cut(s)	319, 570, 581, 671
AcoI	YGGCCR	2 cut(s)	144, 484
AcuI	CTGAAG	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	829
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	778
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	4 cut(s)	394, 460, 607, 708
AjuI	GAANNNNNNNTTGG	4 cut(s)	405, 437, 465, 497
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	1 cut(s)	691
AlwI	GGATC	4 cut(s)	319, 570, 581, 671
Ama87I	CYCGRG	1 cut(s)	740
AoxI	GGCC	2 cut(s)	144, 484
ApeKI	GCWGC	2 cut(s)	202, 335
AseI	ATTAAT	1 cut(s)	855
Asp700I	GAANNNNTTC	1 cut(s)	840
AspS9I	GGNCC	3 cut(s)	71, 235, 398
AsuC2I	CCSGG	2 cut(s)	741, 742
AsuHPI	GGTGA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	740
AvaII	GGWCC	3 cut(s)	71, 235, 398
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	864
Bbv12I	GWGCWC	1 cut(s)	864
BbvCI	CCTCAGC	1 cut(s)	878
BbvI	GCAGC	2 cut(s)	189, 322
BciT130I	CCWGG	4 cut(s)	396, 462, 609, 710
BciVI	GTATCC	1 cut(s)	389
BcnI	CCSGG	2 cut(s)	741, 742
BcoDI	GTCTC	1 cut(s)	691
BfaI	CTAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	3 cut(s)	203, 336, 487
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	3 cut(s)	204, 337, 488
Bme1390I	CCNGG	6 cut(s)	396, 462, 609, 710, 741, 742
Bme18I	GGWCC	3 cut(s)	71, 235, 398
BmeT110I	CYCGRG	1 cut(s)	740
BmgT120I	GGNCC	3 cut(s)	71, 235, 398
BmiI	GGNNCC	4 cut(s)	128, 400, 459, 546
BmrFI	CCNGG	6 cut(s)	396, 462, 609, 710, 741, 742
BmsI	GCATC	2 cut(s)	256, 650
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	2 cut(s)	348, 878
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	741, 742
BsaBI	GATNNNNATC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	461, 709, 740
Bse3DI	GCAATG	2 cut(s)	777, 807
Bse8I	GATNNNNATC	1 cut(s)	561
BseBI	CCWGG	4 cut(s)	396, 462, 609, 710
BseDI	CCNNGG	3 cut(s)	461, 709, 740
BseGI	GGATG	2 cut(s)	271, 864
BseJI	GATNNNNATC	1 cut(s)	561
BseMI	GCAATG	2 cut(s)	777, 807
BseMII	CTCAG	8 cut(s)	189, 201, 339, 630, 638, 702, 738, 892
BseXI	GCAGC	2 cut(s)	189, 322
BshFI	GGCC	2 cut(s)	146, 486
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	740
BsiSI	CCGG	1 cut(s)	741
BslFI	GGGAC	2 cut(s)	384, 757
BsmAI	GTCTC	1 cut(s)	691
BsmFI	GGGAC	2 cut(s)	384, 757
BsmI	GAATGC	1 cut(s)	434
BsnI	GGCC	2 cut(s)	146, 486
BsoBI	CYCGRG	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	864
Bsp143I	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	3 cut(s)	352, 487, 605
BspANI	GGCC	2 cut(s)	146, 486
BspCNI	CTCAG	8 cut(s)	190, 202, 340, 629, 639, 701, 739, 891
BspLI	GGNNCC	4 cut(s)	128, 400, 459, 546
BspPI	GGATC	4 cut(s)	319, 570, 581, 671
BspT107I	GGYRCC	1 cut(s)	126
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	777, 807
BssECI	CCNNGG	3 cut(s)	461, 709, 740
BssMI	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
Bst2UI	CCWGG	4 cut(s)	396, 462, 609, 710
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	8 cut(s)	198, 210, 348, 616, 647, 688, 747, 878
BstF5I	GGATG	2 cut(s)	271, 864
BstKTI	GATC	6 cut(s)	314, 565, 589, 628, 679, 764
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	4 cut(s)	396, 462, 609, 710
BstNSI	RCATGY	1 cut(s)	782
BstSCI	CCNGG	6 cut(s)	394, 460, 607, 708, 739, 740
BstV1I	GCAGC	2 cut(s)	189, 322
BstX2I	RGATCY	2 cut(s)	311, 625
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	311, 625
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	146, 486
BtsCI	GGATG	2 cut(s)	271, 864
BtsI	GCAGTG	2 cut(s)	402, 698
BtsIMutI	CAGTG	3 cut(s)	402, 663, 698
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	71, 235, 398
Cfr9I	CCCGGG	1 cut(s)	740
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	7 cut(s)	50, 95, 120, 388, 574, 779, 887
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	8 cut(s)	198, 210, 348, 616, 647, 688, 747, 878
DpnI	GATC	6 cut(s)	313, 564, 588, 627, 678, 763
DpnII	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
DraIII	CACNNNGTG	1 cut(s)	829
EaeI	YGGCCR	2 cut(s)	144, 484
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Ecl136II	GAGCTC	1 cut(s)	862
Eco24I	GRGCYC	1 cut(s)	864
Eco32I	GATATC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	71, 235, 398
Eco53kI	GAGCTC	1 cut(s)	862
Eco57I	CTGAAG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	862
EcoO109I	RGGNCCY	2 cut(s)	235, 398
EcoRII	CCWGG	4 cut(s)	394, 460, 607, 708
EcoRV	GATATC	1 cut(s)	496
EcoT22I	ATGCAT	1 cut(s)	643
EcoT38I	GRGCYC	1 cut(s)	864
FaeI	CATG	7 cut(s)	53, 98, 123, 391, 577, 782, 890
FalI	AAGNNNNNCTT	2 cut(s)	825, 857
FaqI	GGGAC	2 cut(s)	384, 757
FatI	CATG	7 cut(s)	49, 94, 119, 387, 573, 778, 886
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	203, 336, 487
FokI	GGATG	2 cut(s)	278, 851
FriOI	GRGCYC	1 cut(s)	864
Fsp4HI	GCNGC	3 cut(s)	203, 336, 487
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	3 cut(s)	203, 336, 487
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	146, 486
HapII	CCGG	1 cut(s)	741
Hin1II	CATG	7 cut(s)	53, 98, 123, 391, 577, 782, 890
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	44
HpaII	CCGG	1 cut(s)	741
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	199, 619, 648, 896
Hpy188III	TCNNGA	6 cut(s)	104, 347, 428, 534, 566, 845
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	809, 814
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4V	TGCA	6 cut(s)	94, 180, 299, 641, 812, 832
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	8 cut(s)	198, 210, 348, 616, 647, 688, 747, 878
Hsp92II	CATG	7 cut(s)	53, 98, 123, 391, 577, 782, 890
Kzo9I	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
LmnI	GCTCC	2 cut(s)	457, 697
Lsp1109I	GCAGC	2 cut(s)	189, 322
LweI	GCATC	2 cut(s)	256, 650
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	821
MalI	GATC	6 cut(s)	313, 564, 588, 627, 678, 763
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
MboII	GAAGA	5 cut(s)	413, 416, 520, 635, 728
MfeI	CAATTG	1 cut(s)	276
MflI	RGATCY	2 cut(s)	311, 625
MhlI	GDGCHC	1 cut(s)	864
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	60, 276, 852
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	235, 719
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	840
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	653, 731, 855
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	741
MspR9I	CCNGG	6 cut(s)	396, 462, 609, 710, 741, 742
MunI	CAATTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	434
MvaI	CCWGG	4 cut(s)	396, 462, 609, 710
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	2 cut(s)	741, 742
NdeII	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
NlaIII	CATG	7 cut(s)	53, 98, 123, 391, 577, 782, 890
NlaIV	GGNNCC	4 cut(s)	128, 400, 459, 546
NmuCI	GTSAC	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	1 cut(s)	782
PciI	ACATGT	1 cut(s)	778
PctI	GAATGC	1 cut(s)	434
PdmI	GAANNNNTTC	1 cut(s)	840
PkrI	GCNGC	3 cut(s)	204, 337, 488
PpuMI	RGGWCCY	2 cut(s)	235, 398
PscI	ACATGT	1 cut(s)	778
PshBI	ATTAAT	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	864
Psp5II	RGGWCCY	2 cut(s)	235, 398
Psp6I	CCWGG	4 cut(s)	394, 460, 607, 708
PspGI	CCWGG	4 cut(s)	394, 460, 607, 708
PspN4I	GGNNCC	4 cut(s)	128, 400, 459, 546
PspPI	GGNCC	3 cut(s)	71, 235, 398
PspPPI	RGGWCCY	2 cut(s)	235, 398
PsuI	RGATCY	2 cut(s)	311, 625
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SacI	GAGCTC	1 cut(s)	864
SaqAI	TTAA	3 cut(s)	653, 731, 855
SatI	GCNGC	3 cut(s)	203, 336, 487
Sau3AI	GATC	6 cut(s)	311, 562, 586, 625, 676, 761
Sau96I	GGNCC	3 cut(s)	71, 235, 398
ScrFI	CCNGG	6 cut(s)	396, 462, 609, 710, 741, 742
SduI	GDGCHC	1 cut(s)	864
SfaNI	GCATC	2 cut(s)	256, 650
SinI	GGWCC	3 cut(s)	71, 235, 398
SmaI	CCCGGG	1 cut(s)	742
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	3 cut(s)	60, 276, 852
SsiI	CCGC	3 cut(s)	352, 487, 605
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	864
StyD4I	CCNGG	6 cut(s)	394, 460, 607, 708, 739, 740
TaaI	ACNGT	1 cut(s)	658
TasI	AATT	3 cut(s)	60, 276, 852
TauI	GCSGC	1 cut(s)	489
Tru1I	TTAA	3 cut(s)	653, 731, 855
Tru9I	TTAA	3 cut(s)	653, 731, 855
TscAI	CASTG	3 cut(s)	409, 663, 705
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	2 cut(s)	202, 335
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	4 cut(s)	38, 376, 788, 796
TspMI	CCCGGG	1 cut(s)	740
TspRI	CASTG	3 cut(s)	409, 663, 705
VpaK11BI	GGWCC	3 cut(s)	71, 235, 398
VspI	ATTAAT	1 cut(s)	855
XceI	RCATGY	1 cut(s)	782
XmaI	CCCGGG	1 cut(s)	740
XmnI	GAANNNNTTC	1 cut(s)	840
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.