Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

18806800 .. 18808790

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27590.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAAAAGATCGAGCACAAGTTTGTGGAAGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGACGTGGTCCAAAGGTGGTGGTTTTCCTGCATGGATTTCCTGAAATATGGTACTCGTGGAGGCACCAAATGATTGCTGTGGCCAACAATGGCTACCGGGCGATTGCCTTTGATTGCAGGGGATATGGACTTTCTGAGCTGCCAGCTGAGCCCGAAAAGGCAACTTTCAAGGACCTTGTTGACGAGGTTGTTGGAGTTCTGGATGCTTTGGCCATCGACAAGGCTTTCCTTGTTGGGAAGGATTTTGGATCTATAACTGAATACCTGGTAGCTGCTGCTTATCCCGAACGAATAGGTGGTCTCATATCACTAGGTATCCCTTTCATGCTGCCAGATCCTTCTGCTGTCCAAAATCATCTTCTTCCTGAAGGATTCTACATATCAAGGTGGCAGGAGCCAGGGAGAGCAGAAGCAGATTTTGGCCGCTTTGATGTCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTCCCAATAGCTGCTAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTACCGCCAGGGCTGTCGGAGGAAGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

211

Amino Acids

23.34

Weight (kDa)

4.9

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	26 - 126	8.8e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	27 - 143	1.2e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	28 - 155	3.8e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	2 cut(s)	487, 605
AclWI	GGATC	4 cut(s)	319, 392, 570, 581
AcoI	YGGCCR	3 cut(s)	144, 273, 484
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	68
AjnI	CCWGG	3 cut(s)	327, 460, 607
AjuI	GAANNNNNNNTTGG	4 cut(s)	405, 437, 465, 497
AluBI	AGCT	7 cut(s)	46, 56, 202, 209, 335, 554, 593
AluI	AGCT	7 cut(s)	46, 56, 202, 209, 335, 554, 593
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	368
AlwI	GGATC	4 cut(s)	319, 392, 570, 581
AoxI	GGCC	3 cut(s)	144, 273, 484
ApeKI	GCWGC	5 cut(s)	202, 335, 338, 391, 554
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AspS9I	GGNCC	3 cut(s)	71, 235, 544
AsuC2I	CCSGG	1 cut(s)	161
AvaII	GGWCC	3 cut(s)	71, 235, 544
BalI	TGGCCA	2 cut(s)	146, 275
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	5 cut(s)	189, 322, 325, 378, 541
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	329, 462, 609
BciVI	GTATCC	1 cut(s)	389
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	6 cut(s)	203, 336, 339, 392, 487, 555
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	6 cut(s)	204, 337, 340, 393, 488, 556
Bme1390I	CCNGG	4 cut(s)	161, 329, 462, 609
Bme18I	GGWCC	3 cut(s)	71, 235, 544
BmgBI	CACGTC	1 cut(s)	68
BmgT120I	GGNCC	3 cut(s)	71, 235, 544
BmiI	GGNNCC	3 cut(s)	128, 459, 546
BmrFI	CCNGG	4 cut(s)	161, 329, 462, 609
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	1 cut(s)	558
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	2 cut(s)	461, 608
BseBI	CCWGG	3 cut(s)	329, 462, 609
BseDI	CCNNGG	2 cut(s)	461, 608
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	189, 201
BseXI	GCAGC	5 cut(s)	189, 322, 325, 378, 541
BshFI	GGCC	3 cut(s)	146, 275, 486
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	530
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	3 cut(s)	146, 275, 486
Bso31I	GGTCTC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	18, 216
Bsp143I	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	487, 605
BspANI	GGCC	3 cut(s)	146, 275, 486
BspCNI	CTCAG	2 cut(s)	190, 202
BspLI	GGNNCC	3 cut(s)	128, 459, 546
BspPI	GGATC	4 cut(s)	319, 392, 570, 581
BspT107I	GGYRCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	368
BssECI	CCNNGG	2 cut(s)	461, 608
BssMI	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
BssSI	CACGAG	1 cut(s)	118
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	3 cut(s)	329, 462, 609
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	3 cut(s)	198, 210, 558
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	6 cut(s)	12, 314, 400, 565, 589, 628
BstMAI	GTCTC	1 cut(s)	368
BstMBI	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	3 cut(s)	329, 462, 609
BstSCI	CCNGG	4 cut(s)	159, 327, 460, 607
BstV1I	GCAGC	5 cut(s)	189, 322, 325, 378, 541
BstX2I	RGATCY	3 cut(s)	311, 397, 625
BstYI	RGATCY	3 cut(s)	311, 397, 625
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	146, 275, 486
BtrI	CACGTC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	71, 235, 544
CsiI	ACCWGGT	1 cut(s)	327
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	4 cut(s)	50, 95, 388, 574
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	198, 210, 558
DpnI	GATC	6 cut(s)	11, 313, 399, 564, 588, 627
DpnII	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
EaeI	YGGCCR	3 cut(s)	144, 273, 484
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	368
Eco47I	GGWCC	3 cut(s)	71, 235, 544
Eco57I	CTGAAG	1 cut(s)	450
EcoO109I	RGGNCCY	2 cut(s)	235, 544
EcoRII	CCWGG	3 cut(s)	327, 460, 607
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	4 cut(s)	53, 98, 391, 577
FaiI	YATR	9 cut(s)	51, 96, 112, 189, 317, 368, 389, 443, 575
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	4 cut(s)	49, 94, 387, 573
Fnu4HI	GCNGC	6 cut(s)	203, 336, 339, 392, 487, 555
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	6 cut(s)	203, 336, 339, 392, 487, 555
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	6 cut(s)	203, 336, 339, 392, 487, 555
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	3 cut(s)	146, 275, 486
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	4 cut(s)	53, 98, 391, 577
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	1 cut(s)	435
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	199, 619
Hpy188III	TCNNGA	6 cut(s)	104, 263, 347, 428, 534, 566
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	295, 411, 425
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	2 cut(s)	94, 180
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	3 cut(s)	198, 210, 558
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	4 cut(s)	53, 98, 391, 577
Kzo9I	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	5 cut(s)	189, 322, 325, 378, 541
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	327
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	1 cut(s)	67
MalI	GATC	6 cut(s)	11, 313, 399, 564, 588, 627
MboI	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
MboII	GAAGA	3 cut(s)	413, 416, 520
MflI	RGATCY	3 cut(s)	311, 397, 625
MhlI	GDGCHC	2 cut(s)	18, 216
MlsI	TGGCCA	2 cut(s)	146, 275
MluCI	AATT	1 cut(s)	60
MluNI	TGGCCA	2 cut(s)	146, 275
MmeI	TCCRAC	2 cut(s)	235, 597
MnlI	CCTC	6 cut(s)	29, 117, 241, 535, 609, 613
Mox20I	TGGCCA	2 cut(s)	146, 275
MscI	TGGCCA	2 cut(s)	146, 275
Msp20I	TGGCCA	2 cut(s)	146, 275
MspA1I	CMGCKG	1 cut(s)	209
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	4 cut(s)	161, 329, 462, 609
MvaI	CCWGG	3 cut(s)	329, 462, 609
MwoI	GCNNNNNNNGC	1 cut(s)	211
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
NlaIII	CATG	4 cut(s)	53, 98, 391, 577
NlaIV	GGNNCC	3 cut(s)	128, 459, 546
PfeI	GAWTC	1 cut(s)	435
PflFI	GACNNNGTC	1 cut(s)	69
PkrI	GCNGC	6 cut(s)	204, 337, 340, 393, 488, 556
PpuMI	RGGWCCY	2 cut(s)	235, 544
Psp5II	RGGWCCY	2 cut(s)	235, 544
Psp6I	CCWGG	3 cut(s)	327, 460, 607
PspGI	CCWGG	3 cut(s)	327, 460, 607
PspN4I	GGNNCC	3 cut(s)	128, 459, 546
PspPI	GGNCC	3 cut(s)	71, 235, 544
PspPPI	RGGWCCY	2 cut(s)	235, 544
PsuI	RGATCY	3 cut(s)	311, 397, 625
PsyI	GACNNNGTC	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
SatI	GCNGC	6 cut(s)	203, 336, 339, 392, 487, 555
Sau3AI	GATC	6 cut(s)	9, 311, 397, 562, 586, 625
Sau96I	GGNCC	3 cut(s)	71, 235, 544
ScrFI	CCNGG	4 cut(s)	161, 329, 462, 609
SduI	GDGCHC	2 cut(s)	18, 216
SexAI	ACCWGGT	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	3 cut(s)	71, 235, 544
Sse9I	AATT	1 cut(s)	60
SsiI	CCGC	2 cut(s)	487, 605
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	4 cut(s)	159, 327, 460, 607
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	2 cut(s)	12, 279
TasI	AATT	1 cut(s)	60
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	435
TseI	GCWGC	5 cut(s)	202, 335, 338, 391, 554
TspDTI	ATGAA	2 cut(s)	38, 376
Tth111I	GACNNNGTC	1 cut(s)	69
VpaK11BI	GGWCC	3 cut(s)	71, 235, 544
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.