Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

38244607 .. 38246874

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG320800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGAAAAGATCGAGCACAAGTATGTGGAAGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTCCAAAGGTGGTGCTTTTCCTGCATGGATTTCCAGAAATATGGTACTCGTGGAGGCACCAAATGGTTGCTGTTGCCAACAATGGCTACCGGGCAATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCAGCCAGCTGAGCCTGAAAAGGCTACTTTCAATGACCTTGTTGAAGAGGTTCTTGGCCTTTTGGATTCTTTGGCCATTAACAAGGCTTTCCTTGTTGGTAAGGATTTTGGAGCTATGCCTGCATACATAGTAGCTGCTCTCCATCCTGATCGAGTAGCTGGTCTTATATCACTAGGTATTCCTTTTATGCTACCAGGTCCTACTGCTGTCCAAAATCATCTTCTTCCTGAAGGTTTCTATGTATCAAGGTGGCAGGAGCCAGCTGGGAGGGCAGAAGCAGATTTTGGCCGCTTTGATGTTAAGTCAGTGATAAGGAACATCTACATTCTCTTCTGTGGAAGTGAGGTTCCAGTAGCTGCTAAGGATCAAGAGATCATGGATTTGTTTGATCCAGCTATTCCTCTACCACCATGGTTCTCTGAAGAAGATCTTTCAGTCTATGCATCTCTTTATGAGAAGTCTGGATTCCGTTTTCCATTGCAAATTCCATACAGGCAGGAAGAAACACAACTGTTGCATTTACTCAGTCCTAATCATGTTCAATTATTTTCCTTTAGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

254

Amino Acids

28.45

Weight (kDa)

5.16

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	26 - 126	5.1e-10	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	27 - 137	5.8e-22	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	28 - 207	5.2e-12	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	2 cut(s)	573, 584
AcoI	YGGCCR	2 cut(s)	273, 487
AcsI	RAATTY	1 cut(s)	684
AcuI	CTGAAG	2 cut(s)	450, 642
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	3 cut(s)	232, 245, 743
AjnI	CCWGG	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	6 cut(s)	237, 269, 405, 437, 468, 500
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
AluBI	AGCT	9 cut(s)	46, 56, 209, 314, 335, 359, 464, 557, 596
AluI	AGCT	9 cut(s)	46, 56, 209, 314, 335, 359, 464, 557, 596
Alw21I	GWGCWC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	573, 584
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	3 cut(s)	256, 273, 487
ApeKI	GCWGC	3 cut(s)	202, 335, 557
ApoI	RAATTY	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	2 cut(s)	71, 398
AsuC2I	CCSGG	1 cut(s)	161
AvaII	GGWCC	2 cut(s)	71, 398
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	214, 322, 544
BccI	CCATC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	161
BfaI	CTAG	2 cut(s)	374, 763
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	4 cut(s)	203, 336, 490, 558
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	204, 337, 491, 559
Bme1390I	CCNGG	2 cut(s)	161, 396
Bme18I	GGWCC	2 cut(s)	71, 398
BmgT120I	GGNCC	2 cut(s)	71, 398
BmiI	GGNNCC	3 cut(s)	128, 459, 549
BmrFI	CCNGG	2 cut(s)	161, 396
BmsI	GCATC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	611
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	3 cut(s)	189, 201, 739
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	3 cut(s)	214, 322, 544
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	3 cut(s)	258, 275, 489
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	160
BsnI	GGCC	3 cut(s)	258, 275, 489
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	3 cut(s)	258, 275, 489
BspCNI	CTCAG	3 cut(s)	190, 202, 738
BspLI	GGNNCC	3 cut(s)	128, 459, 549
BspPI	GGATC	2 cut(s)	573, 584
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	611
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	714
Bst6I	CTCTTC	2 cut(s)	240, 536
BstC8I	GCNNGC	3 cut(s)	207, 321, 462
BstDEI	CTNAG	4 cut(s)	198, 210, 561, 725
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	6 cut(s)	12, 352, 568, 576, 592, 631
BstMBI	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
BstMWI	GCNNNNNNNGC	4 cut(s)	91, 211, 320, 470
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	159, 394
BstV1I	GCAGC	3 cut(s)	214, 322, 544
BstX2I	RGATCY	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	3 cut(s)	258, 275, 489
BtgI	CCRYGG	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	3 cut(s)	207, 321, 462
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	71, 398
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	5 cut(s)	50, 95, 577, 612, 737
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	4 cut(s)	198, 210, 561, 725
DpnI	GATC	6 cut(s)	11, 351, 567, 575, 591, 630
DpnII	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
EaeI	YGGCCR	2 cut(s)	273, 487
Eam1104I	CTCTTC	2 cut(s)	240, 536
EarI	CTCTTC	2 cut(s)	240, 536
Eco130I	CCWWGG	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	71, 398
Eco57I	CTGAAG	2 cut(s)	450, 642
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	5 cut(s)	53, 98, 580, 615, 740
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 615, 647
FatI	CATG	5 cut(s)	49, 94, 576, 611, 736
Fnu4HI	GCNGC	4 cut(s)	203, 336, 490, 558
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	4 cut(s)	203, 336, 490, 558
FspBI	CTAG	2 cut(s)	374, 763
GluI	GCNGC	4 cut(s)	203, 336, 490, 558
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	258, 275, 489
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	5 cut(s)	53, 98, 580, 615, 740
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	266, 666
HpaII	CCGG	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	199, 622
Hpy188III	TCNNGA	5 cut(s)	104, 347, 428, 569, 663
HpyAV	CCTTC	1 cut(s)	425
HpyCH4III	ACNGT	1 cut(s)	714
HpyCH4V	TGCA	6 cut(s)	94, 180, 323, 644, 682, 718
HpyF10VI	GCNNNNNNNGC	4 cut(s)	91, 211, 320, 470
HpyF3I	CTNAG	4 cut(s)	198, 210, 561, 725
Hsp92II	CATG	5 cut(s)	53, 98, 580, 615, 740
Kzo9I	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
LmnI	GCTCC	2 cut(s)	311, 457
Lsp1109I	GCAGC	3 cut(s)	214, 322, 544
LweI	GCATC	1 cut(s)	653
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	2 cut(s)	374, 763
MalI	GATC	6 cut(s)	11, 351, 567, 575, 591, 630
MboI	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
MboII	GAAGA	7 cut(s)	257, 413, 416, 523, 635, 638, 713
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	4 cut(s)	60, 165, 684, 743
MluNI	TGGCCA	1 cut(s)	275
MnlI	CCTC	6 cut(s)	29, 117, 241, 462, 538, 612
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	2 cut(s)	279, 501
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	209, 464
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	161, 396
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	4 cut(s)	91, 211, 320, 470
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
NlaIII	CATG	5 cut(s)	53, 98, 580, 615, 740
NlaIV	GGNNCC	3 cut(s)	128, 459, 549
NsiI	ATGCAT	1 cut(s)	646
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	266, 666
PkrI	GCNGC	4 cut(s)	204, 337, 491, 559
PpuMI	RGGWCCY	1 cut(s)	398
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	128, 459, 549
PspPI	GGNCC	2 cut(s)	71, 398
PspPPI	RGGWCCY	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	628
PvuII	CAGCTG	2 cut(s)	209, 464
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	279, 501
SatI	GCNGC	4 cut(s)	203, 336, 490, 558
Sau3AI	GATC	6 cut(s)	9, 349, 565, 573, 589, 628
Sau96I	GGNCC	2 cut(s)	71, 398
ScrFI	CCNGG	2 cut(s)	161, 396
SduI	GDGCHC	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	653
SinI	GGWCC	2 cut(s)	71, 398
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	4 cut(s)	60, 165, 684, 743
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	374, 763
StyD4I	CCNGG	2 cut(s)	159, 394
StyI	CCWWGG	1 cut(s)	611
TaaI	ACNGT	1 cut(s)	714
TaqI	TCGA	2 cut(s)	12, 352
TasI	AATT	4 cut(s)	60, 165, 684, 743
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	266, 666
Tru1I	TTAA	2 cut(s)	279, 501
Tru9I	TTAA	2 cut(s)	279, 501
TscAI	CASTG	1 cut(s)	513
TseI	GCWGC	3 cut(s)	202, 335, 557
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	659
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	2 cut(s)	71, 398
XapI	RAATTY	1 cut(s)	684
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	374, 763
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.