Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016963.1

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

16303 .. 17845

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016963.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atggaaaagatcgagcacaagtatgtggaagtaggaggactaaagcttcatgtagctgaaattggaagtggtccaaaggtggtgcttttcctgcatggatttccagaaatatggtactcgtggaggcaccaaatggttgctgttgccaacaatggctaccgggcaattgcctatgattgcaggggatatggactttctgagcagccagctgagcctgaaaaggctactttcaatgaccttgttgaagaggttcttggccttttggattctttggccattaacaaggctttccttgttggtaaggattttggagctatgcctgcatacatagtagctgctctccgtcctgatcgagtagctggtcttatatcactaggtattccttttatgctaccaggtcctactgctgtccaaaatcatcttcttcctgaaggtttctatgtatcaaggtggcaggagccagctgggagggcagaagcagattttggccgctttgatgttaagtcagtgataaggaacatctacattctcttctgtggaagtgaggttccagtagctgctaaggatcaagagatcatggatttgtttgatccagctattcctctaccaccatggttctctgaagaagatctttcagtctatgcatctctttatgagaagtctggattccgttttccattgcaaattccatacaggagtttagcagtggactgcggttatactgatccaaaagtctctgctccaacactgcttgtcatgggtgagaaagactacatcttaaagattccggggtttggagattacatacgaactggggcagtgaagcaatttgtgcctgatttggacattaaatacattgcagaagggaatcatttcgtgcaagaacaacttccagagcaaattaatcagctaattctcacttttctaggaaaacatgggatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

314

Amino Acids

35.0

Weight (kDa)

5.15

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	2 cut(s)	490, 714
AclWI	GGATC	3 cut(s)	573, 584, 719
AcoI	YGGCCR	2 cut(s)	273, 487
AcsI	RAATTY	1 cut(s)	684
AcuI	CTGAAG	2 cut(s)	450, 642
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	794
AgsI	TTSAA	2 cut(s)	232, 245
AjnI	CCWGG	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	6 cut(s)	237, 269, 405, 437, 468, 500
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	739
AlwI	GGATC	3 cut(s)	573, 584, 719
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	3 cut(s)	256, 273, 487
ApeKI	GCWGC	3 cut(s)	202, 335, 557
ApoI	RAATTY	1 cut(s)	684
AseI	ATTAAT	1 cut(s)	903
Asp700I	GAANNNNTTC	3 cut(s)	249, 872, 888
AspS9I	GGNCC	2 cut(s)	71, 398
AsuC2I	CCSGG	2 cut(s)	161, 789
AsuHPI	GGTGA	1 cut(s)	773
AvaII	GGWCC	2 cut(s)	71, 398
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	3 cut(s)	214, 322, 544
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	2 cut(s)	161, 789
BcoDI	GTCTC	1 cut(s)	739
BfaI	CTAG	2 cut(s)	374, 926
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	4 cut(s)	203, 336, 490, 558
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	204, 337, 491, 559
Bme1390I	CCNGG	3 cut(s)	161, 396, 789
Bme18I	GGWCC	2 cut(s)	71, 398
BmgT120I	GGNCC	2 cut(s)	71, 398
BmiI	GGNNCC	3 cut(s)	128, 459, 549
BmrFI	CCNGG	3 cut(s)	161, 396, 789
BmrI	ACTGGG	1 cut(s)	822
BmsI	GCATC	1 cut(s)	653
BmuI	ACTGGG	1 cut(s)	822
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuMI	CCSGG	2 cut(s)	161, 789
BsaJI	CCNNGG	2 cut(s)	611, 788
Bsc4I	CCNNNNNNNGG	1 cut(s)	794
Bse1I	ACTGG	2 cut(s)	551, 817
Bse3DI	GCAATG	2 cut(s)	677, 855
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	611, 788
BseLI	CCNNNNNNNGG	1 cut(s)	794
BseMI	GCAATG	2 cut(s)	677, 855
BseMII	CTCAG	2 cut(s)	189, 201
BseNI	ACTGG	2 cut(s)	551, 817
BseXI	GCAGC	3 cut(s)	214, 322, 544
BseYI	CCCAGC	1 cut(s)	464
BshFI	GGCC	3 cut(s)	258, 275, 489
BshNI	GGYRCC	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	18
BsiSI	CCGG	2 cut(s)	160, 788
BslI	CCNNNNNNNGG	1 cut(s)	794
BsmAI	GTCTC	1 cut(s)	739
BsnI	GGCC	3 cut(s)	258, 275, 489
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	2 cut(s)	490, 714
BspANI	GGCC	3 cut(s)	258, 275, 489
BspCNI	CTCAG	2 cut(s)	190, 202
BspLI	GGNNCC	3 cut(s)	128, 459, 549
BspPI	GGATC	3 cut(s)	573, 584, 719
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	2 cut(s)	677, 855
BsrI	ACTGG	2 cut(s)	551, 817
BssECI	CCNNGG	2 cut(s)	611, 788
BssMI	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	611
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	240, 536
BstAPI	GCANNNNNTGC	1 cut(s)	832
BstC8I	GCNNGC	3 cut(s)	207, 321, 462
BstDEI	CTNAG	3 cut(s)	198, 210, 561
BstDSI	CCRYGG	1 cut(s)	611
BstKTI	GATC	8 cut(s)	12, 352, 568, 576, 592, 631, 727, 942
BstMAI	GTCTC	1 cut(s)	739
BstMBI	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 211, 320, 470, 832
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	3 cut(s)	159, 394, 787
BstV1I	GCAGC	3 cut(s)	214, 322, 544
BstX2I	RGATCY	2 cut(s)	628, 939
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	628, 939
BsuRI	GGCC	3 cut(s)	258, 275, 489
BtgI	CCRYGG	1 cut(s)	611
BtsI	GCAGTG	3 cut(s)	711, 746, 825
BtsIMutI	CAGTG	4 cut(s)	513, 711, 746, 825
Cac8I	GCNNGC	3 cut(s)	207, 321, 462
CaiI	CAGNNNCTG	1 cut(s)	557
Cfr13I	GGNCC	2 cut(s)	71, 398
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	6 cut(s)	50, 95, 577, 612, 757, 935
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	3 cut(s)	198, 210, 561
DpnI	GATC	8 cut(s)	11, 351, 567, 575, 591, 630, 726, 941
DpnII	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
EaeI	YGGCCR	2 cut(s)	273, 487
Eam1104I	CTCTTC	2 cut(s)	240, 536
EarI	CTCTTC	2 cut(s)	240, 536
Eco130I	CCWWGG	1 cut(s)	611
Eco47I	GGWCC	2 cut(s)	71, 398
Eco57I	CTGAAG	2 cut(s)	450, 642
EcoO109I	RGGNCCY	1 cut(s)	398
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	611
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	611
FaeI	CATG	6 cut(s)	53, 98, 580, 615, 760, 938
FalI	AAGNNNNNCTT	6 cut(s)	237, 269, 615, 647, 873, 905
FatI	CATG	6 cut(s)	49, 94, 576, 611, 756, 934
Fnu4HI	GCNGC	4 cut(s)	203, 336, 490, 558
Fsp4HI	GCNGC	4 cut(s)	203, 336, 490, 558
FspBI	CTAG	2 cut(s)	374, 926
GluI	GCNGC	4 cut(s)	203, 336, 490, 558
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	3 cut(s)	258, 275, 489
HapII	CCGG	2 cut(s)	160, 788
Hin1II	CATG	6 cut(s)	53, 98, 580, 615, 760, 938
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	4 cut(s)	266, 666, 784, 868
HpaII	CCGG	2 cut(s)	160, 788
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	1 cut(s)	709
Hpy188I	TCNGA	3 cut(s)	199, 622, 944
Hpy188III	TCNNGA	6 cut(s)	104, 347, 428, 569, 663, 893
Hpy8I	GTNNAC	1 cut(s)	709
HpyAV	CCTTC	2 cut(s)	425, 857
HpyCH4V	TGCA	7 cut(s)	94, 180, 323, 644, 682, 860, 880
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 211, 320, 470, 832
HpyF3I	CTNAG	3 cut(s)	198, 210, 561
Hsp92II	CATG	6 cut(s)	53, 98, 580, 615, 760, 938
Kzo9I	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
LmnI	GCTCC	3 cut(s)	311, 457, 745
Lsp1109I	GCAGC	3 cut(s)	214, 322, 544
LweI	GCATC	1 cut(s)	653
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	2 cut(s)	374, 926
MalI	GATC	8 cut(s)	11, 351, 567, 575, 591, 630, 726, 941
MboI	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
MboII	GAAGA	6 cut(s)	257, 413, 416, 523, 635, 638
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	2 cut(s)	628, 939
MhlI	GDGCHC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	6 cut(s)	60, 165, 684, 827, 900, 912
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	6 cut(s)	29, 117, 241, 462, 538, 612
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	3 cut(s)	249, 872, 888
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	5 cut(s)	279, 501, 779, 849, 903
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	209, 464
MspI	CCGG	2 cut(s)	160, 788
MspR9I	CCNGG	3 cut(s)	161, 396, 789
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	5 cut(s)	91, 211, 320, 470, 832
NciI	CCSGG	2 cut(s)	161, 789
NcoI	CCATGG	1 cut(s)	611
NdeII	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
NlaIII	CATG	6 cut(s)	53, 98, 580, 615, 760, 938
NlaIV	GGNNCC	3 cut(s)	128, 459, 549
NsiI	ATGCAT	1 cut(s)	646
PdmI	GAANNNNTTC	3 cut(s)	249, 872, 888
PfeI	GAWTC	4 cut(s)	266, 666, 784, 868
PkrI	GCNGC	4 cut(s)	204, 337, 491, 559
PpuMI	RGGWCCY	1 cut(s)	398
PshBI	ATTAAT	1 cut(s)	903
Psp5II	RGGWCCY	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	464
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	128, 459, 549
PspPI	GGNCC	2 cut(s)	71, 398
PspPPI	RGGWCCY	1 cut(s)	398
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	628, 939
PvuII	CAGCTG	2 cut(s)	209, 464
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	5 cut(s)	279, 501, 779, 849, 903
SatI	GCNGC	4 cut(s)	203, 336, 490, 558
Sau3AI	GATC	8 cut(s)	9, 349, 565, 573, 589, 628, 724, 939
Sau96I	GGNCC	2 cut(s)	71, 398
ScrFI	CCNGG	3 cut(s)	161, 396, 789
SduI	GDGCHC	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	653
SinI	GGWCC	2 cut(s)	71, 398
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	6 cut(s)	60, 165, 684, 827, 900, 912
SsiI	CCGC	2 cut(s)	490, 714
SspMI	CTAG	2 cut(s)	374, 926
StyD4I	CCNGG	3 cut(s)	159, 394, 787
StyI	CCWWGG	1 cut(s)	611
TaqI	TCGA	2 cut(s)	12, 352
TasI	AATT	6 cut(s)	60, 165, 684, 827, 900, 912
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	4 cut(s)	266, 666, 784, 868
Tru1I	TTAA	5 cut(s)	279, 501, 779, 849, 903
Tru9I	TTAA	5 cut(s)	279, 501, 779, 849, 903
TscAI	CASTG	4 cut(s)	513, 711, 753, 825
TseI	GCWGC	3 cut(s)	202, 335, 557
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	332, 659
TspRI	CASTG	4 cut(s)	513, 711, 753, 825
VpaK11BI	GGWCC	2 cut(s)	71, 398
VspI	ATTAAT	1 cut(s)	903
XapI	RAATTY	1 cut(s)	684
XmnI	GAANNNNTTC	3 cut(s)	249, 872, 888
XspI	CTAG	2 cut(s)	374, 926
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.