Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

18810554 .. 18816733

Gene Structure 6180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g27600.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGAAGATCGAGCATAAGTATGTGGAAGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTTCAAATGTGGTGCTTTTCCTGCATGGATTTCCAGAAATATGGTACTCTTGGAGGCACCAGATGATTGCTGTGGCTAACAATGGCTACCGAGCAATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCAGCCAGCTGAGCTTGAAAAGGCTACTTTCAATGACCTTGTTGAAGATGTTGTTGGCCTTTTGGATTCTTTGGCCATTAACAAGGCTTTCCTTGTTGGTAAGGATTTTGGAGCTATGCCTGCATACATAGTAGCTGCTCTCCATCCTGATCGAGTAGCTGGTGTCATATCACTAGGTATTCCTTTTTTTCTACCAGGTCCGAGTGCAGTCCAAAACCATCTTCTTCCTGAAGGGTTCTATATATCAAGGTGGCAGGAGCCAGTTGGGAGGGCTGAAGCAGATTTTGGCCGCTTTGATGTTAAGTCGGTGATAAGGAACATCTACATACTCTTCAGTGGAAGTGAGATACCTGTAGCTGCTAAGGATCAAGAGATCATGGATTTGTTTGATCCAGCTATTCCTCTACCACCTTGGTTCTCTGAAGAAGATCTTTCAGTCTATGCATCTCTTTATGAGAAATCTGGATTCTGTTTTCCATTGCAAATACCATACAGGGCTTCAGCAGTGGATTGCGGTTACAGTTCTGATCTAAAAGTCATTTCTCCAACACTGCTTGTAATGGAAGGGAATCATTTTGTGCAAGAACAACTTCCAGAGCAGATTAATCAGCTAATTCTCAGTTTCCTTGGAAAACATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

282

Amino Acids

31.18

Weight (kDa)

4.93

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	26 - 132	2.4e-22	alpha/beta hydrolase fold
Hydrolase_4	PF12146	26 - 130	2.4e-11	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	28 - 303	1.1e-14	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AciI	CCGC	2 cut(s)	490, 714
AclWI	GGATC	2 cut(s)	573, 584
AcoI	YGGCCR	2 cut(s)	273, 487
AcuI	CTGAAG	5 cut(s)	450, 495, 517, 642, 684
AfaI	GTAC	1 cut(s)	116
AgsI	TTSAA	4 cut(s)	75, 218, 232, 245
AjnI	CCWGG	1 cut(s)	394
AjuI	GAANNNNNNNTTGG	6 cut(s)	237, 269, 405, 437, 468, 500
AlwI	GGATC	2 cut(s)	573, 584
AoxI	GGCC	3 cut(s)	256, 273, 487
ApeKI	GCWGC	3 cut(s)	202, 335, 557
AseI	ATTAAT	1 cut(s)	804
Asp700I	GAANNNNTTC	2 cut(s)	70, 789
AspS9I	GGNCC	1 cut(s)	398
AsuHPI	GGTGA	1 cut(s)	520
AvaII	GGWCC	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	275
BanI	GGYRCC	1 cut(s)	126
BbvI	GCAGC	3 cut(s)	214, 322, 544
BccI	CCATC	2 cut(s)	351, 426
BciT130I	CCWGG	1 cut(s)	396
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	552
BglII	AGATCT	1 cut(s)	628
BisI	GCNGC	4 cut(s)	203, 336, 490, 558
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	204, 337, 491, 559
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	1 cut(s)	398
BmgT120I	GGNCC	1 cut(s)	398
BmiI	GGNNCC	2 cut(s)	128, 459
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaJI	CCNNGG	2 cut(s)	611, 826
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	677
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	2 cut(s)	611, 826
BseGI	GGATG	1 cut(s)	343
BseMI	GCAATG	1 cut(s)	677
BseMII	CTCAG	3 cut(s)	189, 201, 832
BseNI	ACTGG	1 cut(s)	461
BseXI	GCAGC	3 cut(s)	214, 322, 544
BsgI	GTGCAG	1 cut(s)	426
BshFI	GGCC	3 cut(s)	258, 275, 489
BshNI	GGYRCC	1 cut(s)	126
BsnI	GGCC	3 cut(s)	258, 275, 489
Bsp143I	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	2 cut(s)	490, 714
BspANI	GGCC	3 cut(s)	258, 275, 489
BspCNI	CTCAG	3 cut(s)	190, 202, 831
BspLI	GGNNCC	2 cut(s)	128, 459
BspPI	GGATC	2 cut(s)	573, 584
BspT107I	GGYRCC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	677
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	2 cut(s)	611, 826
BssMI	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
BssT1I	CCWWGG	2 cut(s)	611, 826
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	722
Bst6I	CTCTTC	1 cut(s)	536
BstC8I	GCNNGC	2 cut(s)	207, 321
BstDEI	CTNAG	4 cut(s)	198, 210, 561, 818
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	7 cut(s)	12, 352, 568, 576, 592, 631, 730
BstMBI	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 211, 320
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	214, 322, 544
BstX2I	RGATCY	1 cut(s)	628
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	628
BsuRI	GGCC	3 cut(s)	258, 275, 489
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	2 cut(s)	711, 749
BtsIMutI	CAGTG	3 cut(s)	541, 711, 749
Cac8I	GCNNGC	2 cut(s)	207, 321
Cfr13I	GGNCC	1 cut(s)	398
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	4 cut(s)	50, 95, 577, 836
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	4 cut(s)	198, 210, 561, 818
DpnI	GATC	7 cut(s)	11, 351, 567, 575, 591, 630, 729
DpnII	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
EaeI	YGGCCR	2 cut(s)	273, 487
Eam1104I	CTCTTC	1 cut(s)	536
EarI	CTCTTC	1 cut(s)	536
Eco130I	CCWWGG	2 cut(s)	611, 826
Eco47I	GGWCC	1 cut(s)	398
Eco57I	CTGAAG	5 cut(s)	450, 495, 517, 642, 684
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	611, 826
EcoT22I	ATGCAT	1 cut(s)	646
ErhI	CCWWGG	2 cut(s)	611, 826
FaeI	CATG	4 cut(s)	53, 98, 580, 839
FalI	AAGNNNNNCTT	4 cut(s)	615, 647, 774, 806
FatI	CATG	4 cut(s)	49, 94, 576, 835
Fnu4HI	GCNGC	4 cut(s)	203, 336, 490, 558
FokI	GGATG	1 cut(s)	330
Fsp4HI	GCNGC	4 cut(s)	203, 336, 490, 558
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	4 cut(s)	203, 336, 490, 558
HaeIII	GGCC	3 cut(s)	258, 275, 489
Hin1II	CATG	4 cut(s)	53, 98, 580, 839
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	3 cut(s)	266, 666, 769
HphI	GGTGA	1 cut(s)	520
Hpy188I	TCNGA	5 cut(s)	199, 402, 622, 727, 845
Hpy188III	TCNNGA	6 cut(s)	104, 347, 428, 569, 663, 794
HpyAV	CCTTC	2 cut(s)	425, 758
HpyCH4III	ACNGT	1 cut(s)	722
HpyCH4V	TGCA	7 cut(s)	94, 180, 323, 407, 644, 682, 781
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 211, 320
HpyF3I	CTNAG	4 cut(s)	198, 210, 561, 818
Hsp92II	CATG	4 cut(s)	53, 98, 580, 839
Kzo9I	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
LmnI	GCTCC	2 cut(s)	311, 457
Lsp1109I	GCAGC	3 cut(s)	214, 322, 544
LweI	GCATC	1 cut(s)	653
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	716
MalI	GATC	7 cut(s)	11, 351, 567, 575, 591, 630, 729
MboI	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
MboII	GAAGA	7 cut(s)	19, 257, 413, 416, 523, 635, 638
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	3 cut(s)	60, 165, 813
MluNI	TGGCCA	1 cut(s)	275
MmeI	TCCRAC	1 cut(s)	770
MnlI	CCTC	4 cut(s)	29, 117, 462, 612
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	646
MroXI	GAANNNNTTC	2 cut(s)	70, 789
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	279, 501, 804
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	275
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	396
MunI	CAATTG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	3 cut(s)	91, 211, 320
NdeII	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
NlaIII	CATG	4 cut(s)	53, 98, 580, 839
NlaIV	GGNNCC	2 cut(s)	128, 459
NsiI	ATGCAT	1 cut(s)	646
PdmI	GAANNNNTTC	2 cut(s)	70, 789
PfeI	GAWTC	3 cut(s)	266, 666, 769
PkrI	GCNGC	4 cut(s)	204, 337, 491, 559
PshBI	ATTAAT	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	2 cut(s)	128, 459
PspPI	GGNCC	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	628
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	279, 501, 804
SatI	GCNGC	4 cut(s)	203, 336, 490, 558
Sau3AI	GATC	7 cut(s)	9, 349, 565, 573, 589, 628, 727
Sau96I	GGNCC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	396
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	653
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	3 cut(s)	60, 165, 813
SsiI	CCGC	2 cut(s)	490, 714
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	2 cut(s)	611, 826
TaaI	ACNGT	1 cut(s)	722
TaqI	TCGA	2 cut(s)	12, 352
TasI	AATT	3 cut(s)	60, 165, 813
TauI	GCSGC	1 cut(s)	492
TfiI	GAWTC	3 cut(s)	266, 666, 769
Tru1I	TTAA	3 cut(s)	279, 501, 804
Tru9I	TTAA	3 cut(s)	279, 501, 804
TscAI	CASTG	3 cut(s)	541, 711, 756
TseI	GCWGC	3 cut(s)	202, 335, 557
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	3 cut(s)	541, 711, 756
VpaK11BI	GGWCC	1 cut(s)	398
VspI	ATTAAT	1 cut(s)	804
XmnI	GAANNNNTTC	2 cut(s)	70, 789
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.