Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

30434450 .. 30436355

Gene Structure 1906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG315100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGAAAAGATTGAGCATAAGTATGTGGAGGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTCCAAAGGTGGTGGTTTTCTTGCATGGATTTCCAGAAATATGGTACTCATGGAGGCACCAAATGATTGCTGTGGCCAACAATGGCTATCGGGCAATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCTGCCAGCTGAGCCTGAAAAGGCAACTTTCAAGGACCTCGTTGACGAGGTTGTTGGAGTTTTGGATGCTTTGGCAATTGACAAGGCTTTCCTTGTTGCAAAGGATTTTGGATCTATAACTGAATACCTTGTAGCTGCTGTCTGTCCCGAGCGGGTAGCTGGTGTTATATCACTAGGTATCCCTTTCATGCTTCCAGGTCCCACTGCTGTCCAAAATCATCTTCTTCCTGAAGGATTCTACATATCAAGGTGGCAGGAGCCAGGGAGGGCGGAAGCAGATTTTGGCCGCTTTGATGTCAAGTCGGTGGTAAGGAACATCTACATTCTCTTCTCCAGAAGTGAGGTTCCAATAGCTGCTAAGGATCAAGAAATCATGGATTTGTTTGATCCAGCTATTCCTCTACCGCCAGGGTTCTCAGAGGAAGATCTTTCAGTCTATGCATCTCTGTATGAGAAGTCTGGATTCCGTTTTCCTTTGAGAGTTCCATATAGGAGTTTAACAGTGGATTGTGGTTATACTGATCCAAAGGTCTCAGCTCCAACACTGCTTATCCAGGGTGAGAAAGACTACCTCTTAAATTTTCCTGGGACTGAGGACTACATACGATCTGGGGCAATGAAACATGTTGTGCCTGATTTGGACATTACCTTCATTGCAGAAGGGGGTCACTTTGTGCAAGAACAACTTCCAGAGAAAATTAATGAGCTAATCCTCACTTTCCTCAGCAAACATGGTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

313

Amino Acids

34.85

Weight (kDa)

5.04

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	26 - 126	2.1e-08	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	27 - 259	4.4e-20	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	28 - 302	8.1e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	4 cut(s)	352, 470, 487, 605
AclWI	GGATC	4 cut(s)	319, 570, 581, 716
AcoI	YGGCCR	2 cut(s)	144, 484
AcsI	RAATTY	1 cut(s)	778
AcuI	CTGAAG	1 cut(s)	450
AdeI	CACNNNGTG	1 cut(s)	874
AfaI	GTAC	1 cut(s)	116
AflIII	ACRYGT	1 cut(s)	823
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	5 cut(s)	394, 460, 607, 753, 784
AjuI	GAANNNNNNNTTGG	4 cut(s)	405, 437, 465, 497
Alw26I	GTCTC	1 cut(s)	736
AlwI	GGATC	4 cut(s)	319, 570, 581, 716
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	144, 484
ApeKI	GCWGC	3 cut(s)	202, 335, 554
ApoI	RAATTY	1 cut(s)	778
AseI	ATTAAT	1 cut(s)	900
Asp700I	GAANNNNTTC	1 cut(s)	885
AspS9I	GGNCC	3 cut(s)	71, 235, 398
AsuHPI	GGTGA	1 cut(s)	770
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	3 cut(s)	71, 235, 398
BalI	TGGCCA	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	126
BbvCI	CCTCAGC	1 cut(s)	923
BbvI	GCAGC	3 cut(s)	189, 322, 541
BciT130I	CCWGG	5 cut(s)	396, 462, 609, 755, 786
BciVI	GTATCC	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	736
BfaI	CTAG	1 cut(s)	374
BfuI	GTATCC	1 cut(s)	389
BglII	AGATCT	1 cut(s)	625
BisI	GCNGC	4 cut(s)	203, 336, 487, 555
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	204, 337, 488, 556
Bme1390I	CCNGG	5 cut(s)	396, 462, 609, 755, 786
Bme18I	GGWCC	3 cut(s)	71, 235, 398
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	3 cut(s)	71, 235, 398
BmiI	GGNNCC	4 cut(s)	128, 400, 459, 546
BmrFI	CCNGG	5 cut(s)	396, 462, 609, 755, 786
BmsI	GCATC	2 cut(s)	256, 650
BpmI	CTGGAG	1 cut(s)	517
Bpu10I	CCTNAGC	2 cut(s)	558, 923
Bpu1102I	GCTNAGC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	736
BsaJI	CCNNGG	4 cut(s)	461, 608, 754, 785
Bse3DI	GCAATG	2 cut(s)	822, 852
BseBI	CCWGG	5 cut(s)	396, 462, 609, 755, 786
BseDI	CCNNGG	4 cut(s)	461, 608, 754, 785
BseGI	GGATG	1 cut(s)	271
BseMI	GCAATG	2 cut(s)	822, 852
BseMII	CTCAG	6 cut(s)	189, 201, 630, 747, 783, 937
BseXI	GCAGC	3 cut(s)	189, 322, 541
BshFI	GGCC	2 cut(s)	146, 486
BshNI	GGYRCC	1 cut(s)	126
BsiHKCI	CYCGRG	1 cut(s)	347
BslFI	GGGAC	3 cut(s)	330, 384, 802
BsmAI	GTCTC	1 cut(s)	736
BsmFI	GGGAC	3 cut(s)	330, 384, 802
BsnI	GGCC	2 cut(s)	146, 486
Bso31I	GGTCTC	1 cut(s)	736
BsoBI	CYCGRG	1 cut(s)	347
Bsp143I	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
Bsp1720I	GCTNAGC	1 cut(s)	210
BspACI	CCGC	4 cut(s)	352, 470, 487, 605
BspANI	GGCC	2 cut(s)	146, 486
BspCNI	CTCAG	6 cut(s)	190, 202, 629, 746, 784, 936
BspLI	GGNNCC	4 cut(s)	128, 400, 459, 546
BspPI	GGATC	4 cut(s)	319, 570, 581, 716
BspT107I	GGYRCC	1 cut(s)	126
BspTNI	GGTCTC	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	352
BsrDI	GCAATG	2 cut(s)	822, 852
BssECI	CCNNGG	4 cut(s)	461, 608, 754, 785
BssMI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
Bst2UI	CCWGG	5 cut(s)	396, 462, 609, 755, 786
Bst4CI	ACNGT	1 cut(s)	703
Bst6I	CTCTTC	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	7 cut(s)	198, 210, 558, 616, 733, 792, 923
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	6 cut(s)	314, 565, 589, 628, 724, 809
BstMAI	GTCTC	1 cut(s)	736
BstMBI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	5 cut(s)	396, 462, 609, 755, 786
BstNSI	RCATGY	1 cut(s)	827
BstSCI	CCNGG	5 cut(s)	394, 460, 607, 753, 784
BstV1I	GCAGC	3 cut(s)	189, 322, 541
BstX2I	RGATCY	2 cut(s)	311, 625
BstXI	CCANNNNNNTGG	1 cut(s)	111
BstYI	RGATCY	2 cut(s)	311, 625
BsuI	GTATCC	1 cut(s)	389
BsuRI	GGCC	2 cut(s)	146, 486
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	402, 743
BtsIMutI	CAGTG	3 cut(s)	402, 708, 743
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	71, 235, 398
Csp6I	GTAC	1 cut(s)	115
CspCI	CAANNNNNGTGG	2 cut(s)	63, 98
CviAII	CATG	7 cut(s)	50, 95, 120, 388, 574, 824, 932
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	7 cut(s)	198, 210, 558, 616, 733, 792, 923
DpnI	GATC	6 cut(s)	313, 564, 588, 627, 723, 808
DpnII	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
DraIII	CACNNNGTG	1 cut(s)	874
EaeI	YGGCCR	2 cut(s)	144, 484
Eam1104I	CTCTTC	1 cut(s)	533
EarI	CTCTTC	1 cut(s)	533
EciI	GGCGGA	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	736
Eco47I	GGWCC	3 cut(s)	71, 235, 398
Eco57I	CTGAAG	1 cut(s)	450
Eco88I	CYCGRG	1 cut(s)	347
EcoO109I	RGGNCCY	2 cut(s)	235, 398
EcoRII	CCWGG	5 cut(s)	394, 460, 607, 753, 784
EcoT22I	ATGCAT	1 cut(s)	643
FaeI	CATG	7 cut(s)	53, 98, 123, 391, 577, 827, 935
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FaqI	GGGAC	3 cut(s)	330, 384, 802
FatI	CATG	7 cut(s)	49, 94, 119, 387, 573, 823, 931
FauI	CCCGC	1 cut(s)	345
Fnu4HI	GCNGC	4 cut(s)	203, 336, 487, 555
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	4 cut(s)	203, 336, 487, 555
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	4 cut(s)	203, 336, 487, 555
GsuI	CTGGAG	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	146, 486
Hin1II	CATG	7 cut(s)	53, 98, 123, 391, 577, 827, 935
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	44
HinfI	GANTC	2 cut(s)	435, 663
HphI	GGTGA	1 cut(s)	770
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	199, 619, 941
Hpy188III	TCNNGA	7 cut(s)	104, 347, 428, 534, 566, 660, 890
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	425, 854, 859
HpyCH4III	ACNGT	1 cut(s)	703
HpyCH4V	TGCA	6 cut(s)	94, 180, 299, 641, 857, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	7 cut(s)	198, 210, 558, 616, 733, 792, 923
Hsp92II	CATG	7 cut(s)	53, 98, 123, 391, 577, 827, 935
Kzo9I	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
LmnI	GCTCC	2 cut(s)	457, 742
Lsp1109I	GCAGC	3 cut(s)	189, 322, 541
LweI	GCATC	2 cut(s)	256, 650
MaeI	CTAG	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	866
MalI	GATC	6 cut(s)	313, 564, 588, 627, 723, 808
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
MboII	GAAGA	4 cut(s)	413, 416, 520, 635
MfeI	CAATTG	2 cut(s)	165, 276
MflI	RGATCY	2 cut(s)	311, 625
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	5 cut(s)	60, 165, 276, 778, 897
MluNI	TGGCCA	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	235, 764
Mox20I	TGGCCA	1 cut(s)	146
Mph1103I	ATGCAT	1 cut(s)	643
MroXI	GAANNNNTTC	1 cut(s)	885
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	3 cut(s)	698, 776, 900
MslI	CAYNNNNRTG	1 cut(s)	21
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	5 cut(s)	396, 462, 609, 755, 786
MunI	CAATTG	2 cut(s)	165, 276
MvaI	CCWGG	5 cut(s)	396, 462, 609, 755, 786
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
NlaIII	CATG	7 cut(s)	53, 98, 123, 391, 577, 827, 935
NlaIV	GGNNCC	4 cut(s)	128, 400, 459, 546
NmuCI	GTSAC	1 cut(s)	866
NsiI	ATGCAT	1 cut(s)	643
NspI	RCATGY	1 cut(s)	827
PciI	ACATGT	1 cut(s)	823
PdmI	GAANNNNTTC	1 cut(s)	885
PfeI	GAWTC	2 cut(s)	435, 663
PkrI	GCNGC	4 cut(s)	204, 337, 488, 556
PpuMI	RGGWCCY	2 cut(s)	235, 398
PscI	ACATGT	1 cut(s)	823
PshBI	ATTAAT	1 cut(s)	900
Psp5II	RGGWCCY	2 cut(s)	235, 398
Psp6I	CCWGG	5 cut(s)	394, 460, 607, 753, 784
PspGI	CCWGG	5 cut(s)	394, 460, 607, 753, 784
PspN4I	GGNNCC	4 cut(s)	128, 400, 459, 546
PspPI	GGNCC	3 cut(s)	71, 235, 398
PspPPI	RGGWCCY	2 cut(s)	235, 398
PsuI	RGATCY	2 cut(s)	311, 625
PvuII	CAGCTG	1 cut(s)	209
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	21
SaqAI	TTAA	3 cut(s)	698, 776, 900
SatI	GCNGC	4 cut(s)	203, 336, 487, 555
Sau3AI	GATC	6 cut(s)	311, 562, 586, 625, 721, 806
Sau96I	GGNCC	3 cut(s)	71, 235, 398
ScrFI	CCNGG	5 cut(s)	396, 462, 609, 755, 786
SfaNI	GCATC	2 cut(s)	256, 650
SinI	GGWCC	3 cut(s)	71, 235, 398
SmiMI	CAYNNNNRTG	1 cut(s)	21
Sse9I	AATT	5 cut(s)	60, 165, 276, 778, 897
SsiI	CCGC	4 cut(s)	352, 470, 487, 605
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	5 cut(s)	394, 460, 607, 753, 784
TaaI	ACNGT	1 cut(s)	703
TasI	AATT	5 cut(s)	60, 165, 276, 778, 897
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	435, 663
Tru1I	TTAA	3 cut(s)	698, 776, 900
Tru9I	TTAA	3 cut(s)	698, 776, 900
TscAI	CASTG	3 cut(s)	409, 708, 750
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	3 cut(s)	202, 335, 554
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	4 cut(s)	38, 376, 833, 841
TspGWI	ACGGA	1 cut(s)	656
TspRI	CASTG	3 cut(s)	409, 708, 750
VpaK11BI	GGWCC	3 cut(s)	71, 235, 398
VspI	ATTAAT	1 cut(s)	900
XapI	RAATTY	1 cut(s)	778
XceI	RCATGY	1 cut(s)	827
XmnI	GAANNNNTTC	1 cut(s)	885
XspI	CTAG	1 cut(s)	374
Zsp2I	ATGCAT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.