Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001763

Physical Location & Seq

Genomic Coordinates Reverse (-)

30438106 .. 30453820

Gene Structure 15715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG315300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCTGGATCAAACAAGATTTGATTGTTTCTGTCGATCTCTCATGGAAAAGATCGAGCACAAGTATGTGGAAGTAGGAGGACTAAAGCTTCATGTAGCTGAAATTGGAAGTGGTCCAAAGGTGGTGCTTTTCCTGCATGGATCTCCAGAAATATGGTACTCGTGGAGGCACCAAATGGTTGCTGTTGCCAACAATGGCTACCGGGCAATTGCCTATGATTGCAGGGGATATGGACTTTCTGAGCAGTCAGCTGAGCCTGAAAAGGCTACTTTCAATGACCTTGTTGAAGAGGTTCTTGGCCTTTTGGATTCTTTGGCCATTAGCAAGGCTTTCCTTGTTGGTCCGACTGCTGTCCAAAATCATCTTCTTCCTGAAGGTTTCTATGTATCAAGGTGGCAGGAGCCAGCTGGGAGGGCAGAAGCAGATTTTGGTCGCTTTGATGTTAAGTCAGTGATAAGGAACATCTACATTCTCTTCTGTGGAAGTGAGGTTCCAGTAGCTGCTAAGGATCAAGAGATCATGGATTTGTTTGATCCAGCTATTCCTCTACCACCATGGTTCTCTGAAGAAGATCTTTCAGTCTATGCATCTCTTTATGAGAAGTCTGGATTCCGTTTTCCATTGCAAATTCCATACAGGAGTTTAGCAGTGGACTGCGGTTATACTGATCCAAAAGTCTCTGCTCCAACACTGCTTGTCATGGGTGAGAAAGACTACATCTTAAAGATTCCAGGGTTTGGAGATTACATACGAACTGGGGCAGTGAAGCAATTTGTGCCTGATTTGGACATTAAATACATTGCAGAAGGGAATCATTTCGTGCAAGAACAACTTCCAGAGCAAATTAATCAGCTAATTCTCACTTTTCTTGGAAAACATGGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

295

Amino Acids

33.15

Weight (kDa)

5.07

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	41 - 114	6e-10	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	42 - 283	1.8e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001763)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27590 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600 FvH4_5g27600
malus_domestica	MD09G1251600.v1.1 MD17G1243800.v1.1 MD17G1243900.v1.1
prunus_persica	Prupe.3G156500_v2.0.a1 Prupe.3G156500_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156600_v2.0.a1 Prupe.3G156700_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1 Prupe.3G156800_v2.0.a1
pyrus_communis	pycom09g16780 pycom09g16790 pycom09g16800 pycom17g24640 pycom17g24650 pycom17g24680
rosa_chinensis	RchiOBHm_Chr4g0406151 RchiOBHm_Chr4g0406161 RchiOBHm_Chr7g0219011 RchiOBHm_Chr7g0219021
rosa_laevigata	RLG00000002311 RLG00000002312
rosa_multiflora	Rmu_sc0011122.1_g000005 Rmu_sc0011122.1_g000006 Rmu_sc0016963.1_g000003 Rmu_sc0016963.1_g000004
rosa_roxburghii	Rroxscaffold_1G00068570 Rroxscaffold_3G00240240 Rroxscaffold_3G00240250
rosa_rugosa	Rorug07G0180600 Rorug07G0180600
rosa_samantha	Rh7AG323800 Rh7BG315100 Rh7BG315300 Rh7CG340800 Rh7DG320800
rosa_wichuraiana	Rw7G027420 Rw7G027430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	737
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	5 cut(s)	15, 148, 516, 527, 662
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	393, 585
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	1 cut(s)	737
AgsI	TTSAA	2 cut(s)	274, 287
AjnI	CCWGG	1 cut(s)	730
AjuI	GAANNNNNNNTTGG	6 cut(s)	279, 311, 348, 380, 411, 443
AloI	GAACNNNNNNTCC	2 cut(s)	474, 506
AluBI	AGCT	8 cut(s)	88, 98, 251, 407, 500, 539, 853, 885
AluI	AGCT	8 cut(s)	88, 98, 251, 407, 500, 539, 853, 885
Alw21I	GWGCWC	1 cut(s)	60
Alw26I	GTCTC	1 cut(s)	682
AlwI	GGATC	5 cut(s)	15, 148, 516, 527, 662
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	2 cut(s)	298, 315
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	627
AseI	ATTAAT	1 cut(s)	846
Asp700I	GAANNNNTTC	3 cut(s)	291, 815, 831
AspS9I	GGNCC	2 cut(s)	113, 341
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	2 cut(s)	113, 341
BalI	TGGCCA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	168
BauI	CACGAG	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	487
BciT130I	CCWGG	1 cut(s)	732
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	1 cut(s)	682
BglII	AGATCT	1 cut(s)	571
BisI	GCNGC	1 cut(s)	501
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	2 cut(s)	203, 732
Bme18I	GGWCC	2 cut(s)	113, 341
BmgT120I	GGNCC	2 cut(s)	113, 341
BmiI	GGNNCC	3 cut(s)	170, 402, 492
BmrFI	CCNGG	2 cut(s)	203, 732
BmrI	ACTGGG	1 cut(s)	765
BmsI	GCATC	1 cut(s)	596
BmuI	ACTGGG	1 cut(s)	765
BoxI	GACNNNNGTC	1 cut(s)	350
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	504
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	554, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	737
Bse1I	ACTGG	2 cut(s)	494, 760
Bse3DI	GCAATG	2 cut(s)	620, 798
BseBI	CCWGG	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	554, 731
BseLI	CCNNNNNNNGG	1 cut(s)	737
BseMI	GCAATG	2 cut(s)	620, 798
BseMII	CTCAG	2 cut(s)	231, 243
BseNI	ACTGG	2 cut(s)	494, 760
BseXI	GCAGC	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	407
BshFI	GGCC	2 cut(s)	300, 317
BshNI	GGYRCC	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	737
BsmAI	GTCTC	1 cut(s)	682
BsnI	GGCC	2 cut(s)	300, 317
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp143I	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
Bsp1720I	GCTNAGC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	2 cut(s)	300, 317
BspCNI	CTCAG	2 cut(s)	232, 244
BspLI	GGNNCC	3 cut(s)	170, 402, 492
BspPI	GGATC	5 cut(s)	15, 148, 516, 527, 662
BspT107I	GGYRCC	1 cut(s)	168
BsrDI	GCAATG	2 cut(s)	620, 798
BsrI	ACTGG	2 cut(s)	494, 760
BssECI	CCNNGG	2 cut(s)	554, 731
BssMI	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
BssSI	CACGAG	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	554
Bst2BI	CACGAG	1 cut(s)	160
Bst2UI	CCWGG	1 cut(s)	732
Bst6I	CTCTTC	2 cut(s)	282, 479
BstAPI	GCANNNNNTGC	1 cut(s)	775
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	240, 252, 504
BstDSI	CCRYGG	1 cut(s)	554
BstKTI	GATC	9 cut(s)	10, 38, 54, 143, 511, 519, 535, 574, 670
BstMAI	GTCTC	1 cut(s)	682
BstMBI	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 413, 775
BstNI	CCWGG	1 cut(s)	732
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	2 cut(s)	201, 730
BstV1I	GCAGC	1 cut(s)	487
BstX2I	RGATCY	2 cut(s)	140, 571
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	2 cut(s)	140, 571
BsuRI	GGCC	2 cut(s)	300, 317
BtgI	CCRYGG	1 cut(s)	554
BtsI	GCAGTG	3 cut(s)	654, 689, 768
BtsIMutI	CAGTG	4 cut(s)	456, 654, 689, 768
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	500
Cfr13I	GGNCC	2 cut(s)	113, 341
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	7 cut(s)	43, 92, 137, 520, 555, 700, 878
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	3 cut(s)	240, 252, 504
DpnI	GATC	9 cut(s)	9, 37, 53, 142, 510, 518, 534, 573, 669
DpnII	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	282, 479
EarI	CTCTTC	2 cut(s)	282, 479
Eco130I	CCWWGG	1 cut(s)	554
Eco47I	GGWCC	2 cut(s)	113, 341
Eco57I	CTGAAG	2 cut(s)	393, 585
EcoRII	CCWGG	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	554
EcoT22I	ATGCAT	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	554
FaeI	CATG	7 cut(s)	46, 95, 140, 523, 558, 703, 881
FalI	AAGNNNNNCTT	6 cut(s)	279, 311, 558, 590, 816, 848
FatI	CATG	7 cut(s)	42, 91, 136, 519, 554, 699, 877
Fnu4HI	GCNGC	1 cut(s)	501
Fsp4HI	GCNGC	1 cut(s)	501
GluI	GCNGC	1 cut(s)	501
GsaI	CCCAGC	1 cut(s)	411
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	300, 317
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	7 cut(s)	46, 95, 140, 523, 558, 703, 881
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	4 cut(s)	308, 609, 727, 811
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	241, 345, 565
Hpy188III	TCNNGA	5 cut(s)	146, 371, 512, 606, 836
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	2 cut(s)	368, 800
HpyCH4V	TGCA	6 cut(s)	136, 222, 587, 625, 803, 823
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 413, 775
HpyF3I	CTNAG	3 cut(s)	240, 252, 504
Hsp92II	CATG	7 cut(s)	46, 95, 140, 523, 558, 703, 881
Kzo9I	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
LmnI	GCTCC	3 cut(s)	400, 688, 882
Lsp1109I	GCAGC	1 cut(s)	487
LweI	GCATC	1 cut(s)	596
MalI	GATC	9 cut(s)	9, 37, 53, 142, 510, 518, 534, 573, 669
MboI	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
MboII	GAAGA	6 cut(s)	299, 356, 359, 466, 578, 581
MfeI	CAATTG	1 cut(s)	207
MflI	RGATCY	2 cut(s)	140, 571
MhlI	GDGCHC	1 cut(s)	60
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	6 cut(s)	102, 207, 627, 770, 843, 855
MluNI	TGGCCA	1 cut(s)	317
MmeI	TCCRAC	2 cut(s)	368, 710
MnlI	CCTC	6 cut(s)	71, 159, 283, 405, 481, 555
Mox20I	TGGCCA	1 cut(s)	317
Mph1103I	ATGCAT	1 cut(s)	589
MroXI	GAANNNNTTC	3 cut(s)	291, 815, 831
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	4 cut(s)	444, 722, 792, 846
MslI	CAYNNNNRTG	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	2 cut(s)	251, 407
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	203, 732
MunI	CAATTG	1 cut(s)	207
MvaI	CCWGG	1 cut(s)	732
MwoI	GCNNNNNNNGC	3 cut(s)	133, 413, 775
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
NlaIII	CATG	7 cut(s)	46, 95, 140, 523, 558, 703, 881
NlaIV	GGNNCC	3 cut(s)	170, 402, 492
NsiI	ATGCAT	1 cut(s)	589
PdmI	GAANNNNTTC	3 cut(s)	291, 815, 831
PfeI	GAWTC	4 cut(s)	308, 609, 727, 811
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	1 cut(s)	502
PshAI	GACNNNNGTC	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	730
PspFI	CCCAGC	1 cut(s)	407
PspGI	CCWGG	1 cut(s)	730
PspN4I	GGNNCC	3 cut(s)	170, 402, 492
PspPI	GGNCC	2 cut(s)	113, 341
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	140, 571
PvuII	CAGCTG	2 cut(s)	251, 407
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
RseI	CAYNNNNRTG	1 cut(s)	63
SaqAI	TTAA	4 cut(s)	444, 722, 792, 846
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	9 cut(s)	7, 35, 51, 140, 508, 516, 532, 571, 667
Sau96I	GGNCC	2 cut(s)	113, 341
ScrFI	CCNGG	2 cut(s)	203, 732
SduI	GDGCHC	1 cut(s)	60
SfaNI	GCATC	1 cut(s)	596
SinI	GGWCC	2 cut(s)	113, 341
SmiMI	CAYNNNNRTG	1 cut(s)	63
Sse9I	AATT	6 cut(s)	102, 207, 627, 770, 843, 855
SsiI	CCGC	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	201, 730
StyI	CCWWGG	1 cut(s)	554
TaqI	TCGA	2 cut(s)	34, 54
TasI	AATT	6 cut(s)	102, 207, 627, 770, 843, 855
TfiI	GAWTC	4 cut(s)	308, 609, 727, 811
Tru1I	TTAA	4 cut(s)	444, 722, 792, 846
Tru9I	TTAA	4 cut(s)	444, 722, 792, 846
TscAI	CASTG	4 cut(s)	456, 654, 696, 768
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	1 cut(s)	80
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	4 cut(s)	456, 654, 696, 768
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	113, 341
VspI	ATTAAT	1 cut(s)	846
XapI	RAATTY	1 cut(s)	627
XmnI	GAANNNNTTC	3 cut(s)	291, 815, 831
Zsp2I	ATGCAT	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.