Rh7CG341000

Squamous cell carcinoma antigen recognized by T-cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0004707
Physical Location & Seq
Forward (+)
38121680 .. 38130010
8331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG341000.1

Sequence Viewer

Length: 2163 bp
ATGGAGGAAGAAACCCTAAATCCTGAACCAGAGACCGTGACTTCGCAAGAGAACAACGGAGACCAATCCATGCTGGATGCCGCTGACCAAAATCCTAACTCCTCCAGCTCCGATTCTGATTCCGACTCCGGCTCCGATGACGAAGACCAAGCCCAGCAAAACCTGGAGATTCAAACACTCGAAGCCGAGCTCGCAACCAACCCCTCCAACTACGATGCCCATGTCCAATACATTCAGATTCTGAGGAAAATGGCTGACATTGAAAAGCTGAGGCGAGCGAGGGAAGCTATGAGTATGCTGTTGCCGTTAACCCCCTCCATGTGGCAGGATTGGGCTAAGGACGAACTTGCTATGGGCTCCGGACCCGAGACGTTTTCTACAGTTGAAAAGCTTTATGAGCAAGGAGTCTCTGATTATCTGTCCATCTCTCTTTGGCGAGACTACTTAAATTTTGTTCGAGAAAATGATCCGTCAGTAAAAGAATCTTCACCTGCTGGTATTTCCAAGGAAAGAGATTTATTTGAGCGTGCTCTTACTGCAGCTGGTTTGCATGTATCTGAAGGCAATAAGATATGGGAAGCTTACAGGGAGTTTGAGCAAGCTATATGTGATACTATCGATGGGACTGACACTCAGGCAAGAGAGAAGCAAATTCAGCGCATTCGTGTTATATTCCAACGTCAGCTATCAGTTCCCCATGTTAATATGAGATCAACACTTTTGGCTTACAAGGCATGGGAGATGGAACAAGGAACCATTGTTGACACTGGCTGCAGTGATCAGGATGGTATTTCATCTCATGTTGCCGCAGCATACCAAAAGGCATTGGAAATTTATAACGCCCGTGTTCATTTTGAAGAACAAATCAGTCAGCATGATATGCCTGAGATAGAAAGACTTGAAAAGTTCATGAACTACTTGAAATTTGAGCAATCTTCTGGAGATCCTGCCCGTGTTCAAGTGTTGTATGAACGGGCTATTGCTGAGTTTCCTATAGCCAGTCAGCTCTGGCTTGATTATACTTCCTATTTGGACAAAACTTTGAAGGTTGGCAGAATTATAAGCAACGTTTATTCTAGGGCTGTAAAGAATTGCCCCTGGGTTGGAGAACTTTGGGTCAGATATTTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGAGATTGCAGCTGTGTTTTACAAGTCCCAGCAATGCACCTTTTCAACCCTTGATGAGTACGTGGAGTTGTTTCTCACCCGCATAGATGGCTTAAGACGAAGACTATCATGCCCCGTTGAAGGAGAGCACGCCTTGGATTATTCATTGTTGAGGGATACATTTCAGTCTGCATCGGATTACCTATCACCACAGATGAAGAACACAGATGTCCTGTTACGTTTGTATGCTTATTGGGCCCGCCTAGAGCTACATCTGGGAAAAGATTTAGTTGCTGCTCGGGGGGTTTGGGAAAGTTTACTGAAGATCAGTGGTATGATGATGGAAGCCTGGCTAGGTTATATAGCAATGGAAATTGAATCGGGCCATGTGAATGAAGCTCGGTCCATATATAGGAGATGCTACAGTAAAAAATTTTCCGGCACTGGTTCAGAGGACATTTGCTACTTGTGGTTGCGCTTTGAGAGGGAGTTTGGGTCGTTGGATGATTTCGACTATGCAGAACGTAAGGTTGCTCCCCGTCTGCAAGAGCTTCAACTATTAAGGTCCAAGCAAGAATCCAAATTGACTGAAGAGAGGGAGAATTCTCTCAAAAAGAATGTGCGTGAGAAGAGAAAGCAAGCTTCAGATGTAAGTGATGAACAACCTCCAGCAAAGAGGCAAAAGGATGCAACTCAAAAGCAAAAGAAAGTGCATGGGAAGGATTATGAGGTGCAGAACAGAGCTGAACAAAATGAAGGGAAAGAGATGAAAGCCAAGGGGGCCAAAGATGTACAAAATGAGATGAAAGAGCCTGTTCTAGAGAAAACAAAAGTATACGCTGACCAATGCACTGCTTTTGTATCAAACCTTAGCTTAAAGGCAAATAATGAACATCTTCATCAGTTCTTCAGTGATGTTGGAGGAGTTGTTGCTATTCGAATACTGAAGGACAAGTTCACTGGAAATTCAAGGGTCTCTCTCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1 Suf

Protein Analysis

720

Amino Acids

82.45

Weight (kDa)

5.19

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suf PF05843 57 - 393 4.3e-29 Suppressor of forked protein (Suf)
HAT_PRP39_N PF23240 60 - 242 9e-17 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 61 - 202 4.8e-06 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C PF23241 281 - 363 6.2e-12 PRP39 C-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 283 - 379 1.9e-07 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_N PF23240 304 - 411 6.3e-07 PRP39 N-terminal HAT repeat
RRM_1 PF00076 666 - 704 7.9e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 837, 1061
AarI CACCTGC 1 cut(s) 499
Acc36I ACCTGC 1 cut(s) 499
AccI GTMKAC 1 cut(s) 1974
AccIII TCCGGA 1 cut(s) 359
AciI CCGC 4 cut(s) 81, 807, 1240, 1399
AclI AACGTT 1 cut(s) 1068
AclWI GGATC 2 cut(s) 461, 938
AcoI YGGCCR 1 cut(s) 1144
AcsI RAATTY 7 cut(s) 448, 651, 831, 923, 1571, 1741, 2104
AcuI CTGAAG 6 cut(s) 579, 1481, 1749, 1767, 2032, 2105
AfaI GTAC 2 cut(s) 1220, 1932
AfiI CCNNNNNNNGG 4 cut(s) 321, 1103, 1280, 1551
AflII CTTAAG 1 cut(s) 1252
AjnI CCWGG 3 cut(s) 162, 1097, 1487
Alw21I GWGCWC 3 cut(s) 192, 532, 1290
Alw26I GTCTC 8 cut(s) 26, 54, 362, 412, 432, 2119, 2129, 2137
AlwI GGATC 2 cut(s) 461, 938
AlwNI CAGNNNCTG 1 cut(s) 241
Ama87I CYCGRG 2 cut(s) 365, 1437
Aor13HI TCCGGA 1 cut(s) 359
AoxI GGCC 4 cut(s) 1144, 1395, 1522, 1920
ApaI GGGCCC 1 cut(s) 1399
ApeKI GCWGC 5 cut(s) 539, 771, 809, 1169, 1433
ApoI RAATTY 7 cut(s) 448, 651, 831, 923, 1571, 1741, 2104
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
Asp700I GAANNNNTTC 1 cut(s) 2034
AspLEI GCGC 2 cut(s) 660, 1617
AspS9I GGNCC 7 cut(s) 362, 1395, 1396, 1522, 1542, 1704, 1920
AsuHPI GGTGA 3 cut(s) 480, 1228, 1338
AsuII TTCGAA 1 cut(s) 2077
AvaI CYCGRG 2 cut(s) 365, 1437
AvaII GGWCC 3 cut(s) 362, 1542, 1704
BaeGI GKGCMC 1 cut(s) 1399
BalI TGGCCA 1 cut(s) 1146
BanII GRGCYC 3 cut(s) 192, 359, 1399
BbsI GAAGAC 2 cut(s) 150, 1267
Bbv12I GWGCWC 3 cut(s) 192, 532, 1290
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 5 cut(s) 551, 758, 821, 1181, 1420
BccI CCATC 6 cut(s) 431, 614, 736, 779, 1241, 1474
BceAI ACGGC 1 cut(s) 289
BciT130I CCWGG 3 cut(s) 164, 1099, 1489
BciVI GTATCC 1 cut(s) 1309
BclI TGATCA 1 cut(s) 778
BcoDI GTCTC 8 cut(s) 26, 54, 362, 412, 432, 2119, 2129, 2137
BfaI CTAG 4 cut(s) 1077, 1403, 1493, 1958
BfmI CTRYAG 5 cut(s) 378, 537, 772, 993, 1561
BfrI CTTAAG 1 cut(s) 1252
BfuAI ACCTGC 1 cut(s) 499
BfuI GTATCC 1 cut(s) 1309
BglI GCCNNNNNGGC 1 cut(s) 1919
BisI GCNGC 7 cut(s) 81, 540, 772, 807, 810, 1170, 1434
BlsI GCNGC 7 cut(s) 82, 541, 773, 808, 811, 1171, 1435
Bme1390I CCNGG 3 cut(s) 164, 1099, 1489
Bme18I GGWCC 3 cut(s) 362, 1542, 1704
BmeT110I CYCGRG 2 cut(s) 365, 1437
BmgT120I GGNCC 7 cut(s) 362, 1395, 1396, 1522, 1542, 1704, 1920
BmiI GGNNCC 6 cut(s) 133, 358, 364, 754, 1397, 1921
BmrFI CCNGG 3 cut(s) 164, 1099, 1489
BmsI GCATC 5 cut(s) 67, 205, 1340, 1547, 1816
BpiI GAAGAC 2 cut(s) 150, 1267
BpmI CTGGAG 4 cut(s) 88, 185, 960, 1791
Bpu10I CCTNAGC 3 cut(s) 269, 336, 2009
Bpu14I TTCGAA 1 cut(s) 2077
Bsa29I ATCGAT 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 1222
BsaI GGTCTC 3 cut(s) 26, 54, 2119
BsaJI CCNNGG 6 cut(s) 504, 1097, 1098, 1134, 1293, 1914
BsaWI WCCGGW 1 cut(s) 359
BsaXI ACNNNNNCTCC 6 cut(s) 116, 146, 1619, 1649, 2052, 2082
Bsc4I CCNNNNNNNGG 4 cut(s) 321, 1103, 1280, 1551
Bse1I ACTGG 4 cut(s) 772, 999, 1588, 2104
Bse3DI GCAATG 2 cut(s) 1199, 1512
BseAI TCCGGA 1 cut(s) 359
BseBI CCWGG 3 cut(s) 164, 1099, 1489
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 6 cut(s) 504, 1097, 1098, 1134, 1293, 1914
BseGI GGATG 4 cut(s) 82, 790, 1648, 1831
BseLI CCNNNNNNNGG 4 cut(s) 321, 1103, 1280, 1551
BseMI GCAATG 2 cut(s) 1199, 1512
BseMII CTCAG 6 cut(s) 233, 260, 647, 876, 975, 1146
BseNI ACTGG 4 cut(s) 772, 999, 1588, 2104
BseRI GAGGAG 2 cut(s) 91, 2076
BseSI GKGCMC 1 cut(s) 1399
BseXI GCAGC 5 cut(s) 551, 758, 821, 1181, 1420
BseYI CCCAGC 2 cut(s) 153, 1188
BsgI GTGCAG 1 cut(s) 1892
BshFI GGCC 4 cut(s) 1146, 1397, 1524, 1922
BshVI ATCGAT 1 cut(s) 618
BsiHKAI GWGCWC 3 cut(s) 192, 532, 1290
BsiHKCI CYCGRG 2 cut(s) 365, 1437
BsiSI CCGG 3 cut(s) 129, 360, 1578
BslFI GGGAC 2 cut(s) 637, 1171
BslI CCNNNNNNNGG 4 cut(s) 321, 1103, 1280, 1551
BsmAI GTCTC 8 cut(s) 26, 54, 362, 412, 432, 2119, 2129, 2137
BsmBI CGTCTC 1 cut(s) 362
BsmFI GGGAC 2 cut(s) 637, 1171
BsmI GAATGC 1 cut(s) 660
BsnI GGCC 4 cut(s) 1146, 1397, 1524, 1922
Bso31I GGTCTC 3 cut(s) 26, 54, 2119
BsoBI CYCGRG 2 cut(s) 365, 1437
Bsp119I TTCGAA 1 cut(s) 2077
Bsp120I GGGCCC 1 cut(s) 1395
Bsp1286I GDGCHC 5 cut(s) 192, 359, 532, 1290, 1399
Bsp13I TCCGGA 1 cut(s) 359
Bsp1407I TGTACA 1 cut(s) 1930
Bsp143I GATC 5 cut(s) 466, 710, 778, 943, 1464
BspACI CCGC 4 cut(s) 81, 807, 1240, 1399
BspANI GGCC 4 cut(s) 1146, 1397, 1524, 1922
BspCNI CTCAG 6 cut(s) 234, 261, 646, 877, 976, 1147
BspDI ATCGAT 1 cut(s) 618
BspEI TCCGGA 1 cut(s) 359
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 6 cut(s) 133, 358, 364, 754, 1397, 1921
BspMAI CTGCAG 2 cut(s) 541, 776
BspMI ACCTGC 1 cut(s) 499
BspPI GGATC 2 cut(s) 461, 938
BspT104I TTCGAA 1 cut(s) 2077
BspTI CTTAAG 1 cut(s) 1252
BspTNI GGTCTC 3 cut(s) 26, 54, 2119
BsrDI GCAATG 2 cut(s) 1199, 1512
BsrGI TGTACA 1 cut(s) 1930
BsrI ACTGG 4 cut(s) 772, 999, 1588, 2104
BssECI CCNNGG 6 cut(s) 504, 1097, 1098, 1134, 1293, 1914
BssMI GATC 5 cut(s) 466, 710, 778, 943, 1464
BssNAI GTATAC 1 cut(s) 1975
BssT1I CCWWGG 4 cut(s) 504, 1134, 1293, 1914
Bst1107I GTATAC 1 cut(s) 1975
Bst2UI CCWGG 3 cut(s) 164, 1099, 1489
Bst4CI ACNGT 3 cut(s) 37, 382, 1565
Bst6I CTCTTC 2 cut(s) 1725, 1763
BstAFI CTTAAG 1 cut(s) 1252
BstAPI GCANNNNNTGC 1 cut(s) 880
BstAUI TGTACA 1 cut(s) 1930
BstBAI YACGTR 1 cut(s) 1222
BstBI TTCGAA 1 cut(s) 2077
BstC8I GCNNGC 7 cut(s) 192, 276, 528, 600, 1290, 1399, 1779
BstDEI CTNAG 9 cut(s) 242, 269, 336, 633, 885, 984, 1155, 2009, 2154
BstF5I GGATG 4 cut(s) 82, 790, 1648, 1831
BstHHI GCGC 2 cut(s) 660, 1617
BstKTI GATC 5 cut(s) 469, 713, 781, 946, 1467
BstMAI GTCTC 8 cut(s) 26, 54, 362, 412, 432, 2119, 2129, 2137
BstMBI GATC 5 cut(s) 466, 710, 778, 943, 1464
BstNI CCWGG 3 cut(s) 164, 1099, 1489
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 3 cut(s) 162, 1097, 1487
BstSFI CTRYAG 5 cut(s) 378, 537, 772, 993, 1561
BstSLI GKGCMC 1 cut(s) 1399
BstV1I GCAGC 5 cut(s) 551, 758, 821, 1181, 1420
BstV2I GAAGAC 2 cut(s) 150, 1267
BstX2I RGATCY 1 cut(s) 943
BstYI RGATCY 1 cut(s) 943
BstZ17I GTATAC 1 cut(s) 1975
Bsu15I ATCGAT 1 cut(s) 618
BsuI GTATCC 1 cut(s) 1309
BsuRI GGCC 4 cut(s) 1146, 1397, 1524, 1922
BsuTUI ATCGAT 1 cut(s) 618
BtsCI GGATG 4 cut(s) 82, 790, 1648, 1831
BtsI GCAGTG 2 cut(s) 781, 1989
BtsIMutI CAGTG 7 cut(s) 765, 781, 1474, 1581, 1989, 2056, 2097
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 7 cut(s) 192, 276, 528, 600, 1290, 1399, 1779
CaiI CAGNNNCTG 1 cut(s) 241
CciI TCATGA 1 cut(s) 909
CfoI GCGC 2 cut(s) 660, 1617
Cfr13I GGNCC 7 cut(s) 362, 1395, 1396, 1522, 1542, 1704, 1920
ClaI ATCGAT 1 cut(s) 618
Csp6I GTAC 2 cut(s) 1219, 1931
CviQI GTAC 2 cut(s) 1219, 1931
DdeI CTNAG 9 cut(s) 242, 269, 336, 633, 885, 984, 1155, 2009, 2154
DpnI GATC 5 cut(s) 468, 712, 780, 945, 1466
DpnII GATC 5 cut(s) 466, 710, 778, 943, 1464
EaeI YGGCCR 1 cut(s) 1144
Eam1104I CTCTTC 2 cut(s) 1725, 1763
EarI CTCTTC 2 cut(s) 1725, 1763
Ecl136II GAGCTC 1 cut(s) 190
Eco130I CCWWGG 4 cut(s) 504, 1134, 1293, 1914
Eco24I GRGCYC 3 cut(s) 192, 359, 1399
Eco31I GGTCTC 3 cut(s) 26, 54, 2119
Eco47I GGWCC 3 cut(s) 362, 1542, 1704
Eco53kI GAGCTC 1 cut(s) 190
Eco57I CTGAAG 6 cut(s) 579, 1481, 1749, 1767, 2032, 2105
Eco88I CYCGRG 2 cut(s) 365, 1437
EcoICRI GAGCTC 1 cut(s) 190
EcoRI GAATTC 1 cut(s) 1741
EcoRII CCWGG 3 cut(s) 162, 1097, 1487
EcoT14I CCWWGG 4 cut(s) 504, 1134, 1293, 1914
EcoT38I GRGCYC 3 cut(s) 192, 359, 1399
ErhI CCWWGG 4 cut(s) 504, 1134, 1293, 1914
Esp3I CGTCTC 1 cut(s) 362
FaqI GGGAC 2 cut(s) 637, 1171
FauI CCCGC 2 cut(s) 1247, 1406
FbaI TGATCA 1 cut(s) 778
FblI GTMKAC 1 cut(s) 1974
Fnu4HI GCNGC 7 cut(s) 81, 540, 772, 807, 810, 1170, 1434
FokI GGATG 4 cut(s) 89, 797, 1655, 1838
FriOI GRGCYC 3 cut(s) 192, 359, 1399
Fsp4HI GCNGC 7 cut(s) 81, 540, 772, 807, 810, 1170, 1434
FspBI CTAG 4 cut(s) 1077, 1403, 1493, 1958
GlaI GCGC 2 cut(s) 659, 1616
GluI GCNGC 7 cut(s) 81, 540, 772, 807, 810, 1170, 1434
GsaI CCCAGC 2 cut(s) 157, 1192
GsuI CTGGAG 4 cut(s) 88, 185, 960, 1791
HaeIII GGCC 4 cut(s) 1146, 1397, 1524, 1922
HapII CCGG 3 cut(s) 129, 360, 1578
HhaI GCGC 2 cut(s) 660, 1617
Hin6I GCGC 2 cut(s) 658, 1615
HinP1I GCGC 2 cut(s) 658, 1615
HincII GTYRAC 2 cut(s) 309, 763
HindII GTYRAC 2 cut(s) 309, 763
HindIII AAGCTT 3 cut(s) 389, 579, 1779
HinfI GANTC 9 cut(s) 113, 119, 125, 169, 238, 405, 482, 1517, 1715
HpaI GTTAAC 1 cut(s) 309
HpaII CCGG 3 cut(s) 129, 360, 1578
HphI GGTGA 3 cut(s) 480, 1228, 1338
Hpy166II GTNNAC 5 cut(s) 309, 763, 1457, 1975, 2097
Hpy188III TCNNGA 7 cut(s) 23, 360, 458, 782, 910, 939, 1958
Hpy8I GTNNAC 5 cut(s) 309, 763, 1457, 1975, 2097
HpyAV CCTTC 6 cut(s) 554, 1039, 1274, 1852, 1889, 2080
HpyCH4III ACNGT 3 cut(s) 37, 382, 1565
HpyCH4IV ACGT 6 cut(s) 371, 679, 1068, 1221, 1378, 1663
HpyF3I CTNAG 9 cut(s) 242, 269, 336, 633, 885, 984, 1155, 2009, 2154
HpySE526I ACGT 6 cut(s) 371, 679, 1068, 1221, 1378, 1663
HspAI GCGC 2 cut(s) 658, 1615
Kpn2I TCCGGA 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 778
KspAI GTTAAC 1 cut(s) 309
Kzo9I GATC 5 cut(s) 466, 710, 778, 943, 1464
LmnI GCTCC 5 cut(s) 113, 137, 362, 1138, 1678
Lsp1109I GCAGC 5 cut(s) 551, 758, 821, 1181, 1420
LweI GCATC 5 cut(s) 67, 205, 1340, 1547, 1816
MaeI CTAG 4 cut(s) 1077, 1403, 1493, 1958
MaeII ACGT 6 cut(s) 371, 679, 1068, 1221, 1378, 1663
MaeIII GTNAC 2 cut(s) 37, 1374
MalI GATC 5 cut(s) 468, 712, 780, 945, 1466
MboI GATC 5 cut(s) 466, 710, 778, 943, 1464
MflI RGATCY 1 cut(s) 943
MhlI GDGCHC 5 cut(s) 192, 359, 532, 1290, 1399
MlsI TGGCCA 1 cut(s) 1146
MluNI TGGCCA 1 cut(s) 1146
MlyI GAGTC 2 cut(s) 119, 414
MmeI TCCRAC 6 cut(s) 147, 231, 700, 1084, 1620, 2038
Mox20I TGGCCA 1 cut(s) 1146
MroI TCCGGA 1 cut(s) 359
MroXI GAANNNNTTC 1 cut(s) 2034
MscI TGGCCA 1 cut(s) 1146
MseI TTAA 6 cut(s) 308, 446, 702, 1253, 1700, 2015
MslI CAYNNNNRTG 1 cut(s) 1530
Msp20I TGGCCA 1 cut(s) 1146
MspA1I CMGCKG 4 cut(s) 83, 542, 1172, 2158
MspCI CTTAAG 1 cut(s) 1252
MspI CCGG 3 cut(s) 129, 360, 1578
MspR9I CCNGG 3 cut(s) 164, 1099, 1489
Mva1269I GAATGC 1 cut(s) 660
MvaI CCWGG 3 cut(s) 164, 1099, 1489
NdeII GATC 5 cut(s) 466, 710, 778, 943, 1464
NlaIV GGNNCC 6 cut(s) 133, 358, 364, 754, 1397, 1921
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 2077
PagI TCATGA 1 cut(s) 909
PaqCI CACCTGC 1 cut(s) 499
PasI CCCWGGG 1 cut(s) 1098
PctI GAATGC 1 cut(s) 660
PdmI GAANNNNTTC 1 cut(s) 2034
PfeI GAWTC 7 cut(s) 113, 119, 169, 238, 482, 1517, 1715
PkrI GCNGC 7 cut(s) 82, 541, 773, 808, 811, 1171, 1435
PleI GAGTC 2 cut(s) 119, 413
PpsI GAGTC 2 cut(s) 119, 413
Ppu21I YACGTR 1 cut(s) 1222
PsiI TTATAA 2 cut(s) 837, 1061
Psp124BI GAGCTC 1 cut(s) 192
Psp1406I AACGTT 1 cut(s) 1068
Psp6I CCWGG 3 cut(s) 162, 1097, 1487
PspFI CCCAGC 2 cut(s) 153, 1188
PspGI CCWGG 3 cut(s) 162, 1097, 1487
PspN4I GGNNCC 6 cut(s) 133, 358, 364, 754, 1397, 1921
PspOMI GGGCCC 1 cut(s) 1395
PspPI GGNCC 7 cut(s) 362, 1395, 1396, 1522, 1542, 1704, 1920
PstI CTGCAG 2 cut(s) 541, 776
PstNI CAGNNNCTG 1 cut(s) 241
PsuI RGATCY 1 cut(s) 943
PvuII CAGCTG 3 cut(s) 542, 1172, 2158
RsaI GTAC 2 cut(s) 1220, 1932
RsaNI GTAC 2 cut(s) 1219, 1931
RseI CAYNNNNRTG 1 cut(s) 1530
SacI GAGCTC 1 cut(s) 192
SaqAI TTAA 6 cut(s) 308, 446, 702, 1253, 1700, 2015
SatI GCNGC 7 cut(s) 81, 540, 772, 807, 810, 1170, 1434
Sau3AI GATC 5 cut(s) 466, 710, 778, 943, 1464
Sau96I GGNCC 7 cut(s) 362, 1395, 1396, 1522, 1542, 1704, 1920
SchI GAGTC 2 cut(s) 119, 414
ScrFI CCNGG 3 cut(s) 164, 1099, 1489
SduI GDGCHC 5 cut(s) 192, 359, 532, 1290, 1399
SfaNI GCATC 5 cut(s) 67, 205, 1340, 1547, 1816
SfcI CTRYAG 5 cut(s) 378, 537, 772, 993, 1561
SfuI TTCGAA 1 cut(s) 2077
SinI GGWCC 3 cut(s) 362, 1542, 1704
SmiMI CAYNNNNRTG 1 cut(s) 1530
SmlI CTYRAG 1 cut(s) 1252
SmoI CTYRAG 1 cut(s) 1252
SsiI CCGC 4 cut(s) 81, 807, 1240, 1399
SspMI CTAG 4 cut(s) 1077, 1403, 1493, 1958
SstI GAGCTC 1 cut(s) 192
StyD4I CCNGG 3 cut(s) 162, 1097, 1487
StyI CCWWGG 4 cut(s) 504, 1134, 1293, 1914
TaaI ACNGT 3 cut(s) 37, 382, 1565
TaiI ACGT 6 cut(s) 374, 682, 1071, 1224, 1381, 1666
TaqI TCGA 5 cut(s) 180, 457, 618, 1650, 2077
TaqII GACCGA 1 cut(s) 1530
TatI WGTACW 1 cut(s) 1930
TauI GCSGC 2 cut(s) 83, 809
TfiI GAWTC 7 cut(s) 113, 119, 169, 238, 482, 1517, 1715
Tru1I TTAA 6 cut(s) 308, 446, 702, 1253, 1700, 2015
Tru9I TTAA 6 cut(s) 308, 446, 702, 1253, 1700, 2015
TscAI CASTG 7 cut(s) 772, 781, 1474, 1588, 1996, 2056, 2104
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 5 cut(s) 539, 771, 809, 1169, 1433
Tsp45I GTSAC 1 cut(s) 37
TspGWI ACGGA 2 cut(s) 72, 459
TspRI CASTG 7 cut(s) 772, 781, 1474, 1588, 1996, 2056, 2104
Vha464I CTTAAG 1 cut(s) 1252
VpaK11BI GGWCC 3 cut(s) 362, 1542, 1704
XapI RAATTY 7 cut(s) 448, 651, 831, 923, 1571, 1741, 2104
XbaI TCTAGA 1 cut(s) 1957
XceI RCATGY 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 1974
XmnI GAANNNNTTC 1 cut(s) 2034
XspI CTAG 4 cut(s) 1077, 1403, 1493, 1958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.