RLG00000002308

Squamous cell carcinoma antigen recognized by T-cells

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004707
Physical Location & Seq
Reverse (-)
32060809 .. 32068943
8135 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002308

Sequence Viewer

Length: 2475 bp
ATGGAGGAAGAAACCCTAAATCCTGAACCAGAGACCCTGACTTCGCAAGAGAACAACAATGGAGACCAACCAATGCTGGATGCCGCTGACCAAAATCCTAACTCCTCCAGCTCCGATTCTGATTCCGACTCCGGCTCCGGCTCCGATGACGAAGACCAAGCCCAGCAAAACCTGGAGATTCAAACACTCGAAGCCGAGCTCGCAACCAACCCCTCCAACTACGATGCCCATGTCCAATACATTAAGATTCTGAGGAAAATGGCTGACATTGAAAAGCTGAGGCGAGCGAGGGAAGCTATGAGTAAGCTGTTGCCGTTAACCCCCTCCATGTGGCAGGATTGGGCTAAGGACGAACTTGCTATGGGCTCCGGACCCGAGACGTTTTCTACAGTTGAAAAGCTTTATGAGCAAGGAGTCTCTGATTATCTGTCCATCTCTCTTTGGCGAGACTACTTAAATTTTGTTCGAGAAAATGATCCGTCAGTAAAAGAATCTTCACTTGCTGGTATTTCGAAGGAAAGAGATTTATTTGAGCGTGCTCTTACTGCAGCTGGTTTGCATGTATCTGAAGGCAATAAGATATGGGAAGCTTACAGGGAGTTTGAGCAAGCTATATATGATACTATCGATGGGACTGACACTCAGGCAAGAGAGAAGCAAATTCAGCGGATTCGTGTTATATTCCAACGCCAGCTATCAGTTCCCCATGTTAATATGAGATCAACACTTTTGGCTTACAAGGCATGGGAGATGGAACAAGGAACCATTGTTGACACTGGCTGCAGTGATCAGGATGGTATTTCATCTCATGTTGCCGCAGCATACCAAAAGGCATTGGAAATTTATAATGCCCGTGTTCATTTTGAAGAACAAATCAGTCAGCATGATATGCCTGAGATAGAAAGACTTGAAAAGTTCATGAACTACTTGAAATTTGAGCAATCTTCTGGAGATCCTGCCCGTGTTCAAGTGTTGTATGAACGGGCTATTGCTGAGTTTCCTATAGCCAGTCAGCTCTGGCTTGATTATACTTCCTATTTGGACAAAACTTTGAAGGTTGGCAGAATTATAAGCAACGTTTATTCTAGGGCTGTAAAGAATTGCCCCTGGGTTGGAGAACTTTGGGTCAGATATTTGCTTTCCTTGGAGCGTGGCCATGCTTCTGAGAAAGAGATTGCAGCTGTGTTTTACAAGTCCCAGCAATGCACCTTTTCAACCCTTGATGAGTACGTGGAGTTGTTTCTTACCCGCATAGATGGCTTAAGACGAAGACTATCATGCCCCGTTGAAGGAGAGCATGCCTTGGATTATTCATTGTTGAGGGATACATTTCAGTCTGCATCGGATTACCTATCACCACAGATGAAGAACACAGATGTCCTGTTACGTTTGTATGCTTATTGGGCCCGCCTAGAGCTACATCTGGGAAAAGATTTAGTTGCTGCTCGGGGGGTTTGGGAAAGTTTACTGAAGATCAGTGGTACGATGATGGAAGCCTGGCTAGGTTATATAGCAATGGAAATTGAATCGGGCCATGTGAATGAAGCTCGGTCCATATATAGGAGATGCTACAGTAAAAAATTTTCCGGCACTGGTTCAGAGGACATTTGCTACTTGTGGTTGCGCTTTGAGAGGGAGTTTGGGTCGTTGGATGATTTCGACTATGCAGAACGTAAGGTTGCTCCCCGTCTGCAAGAGCTTCAACTATTAAGGTCCAAGCAAGAATCCAAATTGACTGAAGAGAGGGAGAATTCTCTCAAAAAGAATGTGCGTGAGAAGAGAAAGCAAGCTTCAGATGTAAGTGATGAACAACCTCCAGCAAAGAGGCAAAAGGATGCAACTCAAAAGCAAAAGAAAGTGCATGGGAAGGATTATGAGGTGCAGAACAAAGCTGAACAAAATGAAGGGAAAGAGATGAAAGCCAAGGGGGCCAAAGATGTACAAAATGAGATGAAAGAGCCTGTTCTAGAGAAAACAAAAGTATACGCTGACCAGTGCACTGCTTTTGTATCAAACCTTAGCTTAAAGGCAAATAATGAACATCTTCATCAGTTCTTCAGTGATGTTGGAGGAGTTGTTGCTATTCGAATACTGAAGGACAAGTTCACTGGAAATTCAAGGGGACTAGCATATGTGGACTTCTCAGATGATGCACACCTTGCTGCAGCCATAGCAAAAAATAAACAGACTCTCCTAGACAGGAAGCTGAGCATTGCACGATCAAATCCAAAGCGTGGCAAGAAAGAACATGGGCACACTGATCAAACTGGCGCAGCCAGTGGATCTGGTGAGACCTCCAATGAACCTAGAGCACGCCAAGGAAGCGACAGCGCGATTAAGAGGAAGAACACATTTGCGGTTCCGAGGAATGTTGCTGCACTTGGTTGGATCACGAATAAGCCAAAAACTCAGGATCCAGATGATGAAAAGCCAAAATCTAACGATGAGTTCAGAAACATGTTCCTGAAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lsm_interact RRM_1 Suf

Protein Analysis

825

Amino Acids

93.86

Weight (kDa)

5.63

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Suf PF05843 60 - 396 7.7e-29 Suppressor of forked protein (Suf)
HAT_PRP39_N PF23240 63 - 244 3e-16 PRP39 N-terminal HAT repeat
HAT_Syf1_CNRKL1_N PF23233 64 - 204 2.2e-06 Pre-mRNA-splicing factor Syf1/CNRKL1 N-terminal HAT repeat
HAT_PRP39_C PF23241 284 - 366 7.4e-12 PRP39 C-terminal HAT repeat
HAT_PRP39_N PF23240 307 - 414 9e-07 PRP39 N-terminal HAT repeat
RRM_1 PF00076 669 - 736 4e-14 RNA recognition motif
Lsm_interact PF05391 806 - 823 1.7e-07 Lsm interaction motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 846, 1070
AccB7I CCANNNNNTGG 1 cut(s) 2234
AccI GTMKAC 1 cut(s) 1983
AccII CGCG 1 cut(s) 2333
AccIII TCCGGA 1 cut(s) 368
AciI CCGC 6 cut(s) 84, 667, 816, 1249, 1408, 2357
AclI AACGTT 1 cut(s) 1077
AclWI GGATC 6 cut(s) 470, 947, 2290, 2396, 2408, 2421
AcoI YGGCCR 1 cut(s) 1153
AcsI RAATTY 7 cut(s) 457, 660, 840, 932, 1580, 1750, 2113
AcuI CTGAAG 6 cut(s) 588, 1490, 1758, 1776, 2041, 2114
AfaI GTAC 3 cut(s) 1229, 1483, 1941
AfiI CCNNNNNNNGG 5 cut(s) 330, 1112, 1289, 1560, 2234
AflII CTTAAG 1 cut(s) 1261
AflIII ACRYGT 1 cut(s) 2457
AjnI CCWGG 3 cut(s) 171, 1106, 1496
Alw21I GWGCWC 4 cut(s) 201, 541, 2000, 2314
Alw26I GTCTC 6 cut(s) 26, 57, 371, 421, 441, 2285
Alw44I GTGCAC 1 cut(s) 1996
AlwI GGATC 6 cut(s) 470, 947, 2290, 2396, 2408, 2421
Ama87I CYCGRG 2 cut(s) 374, 1446
Aor13HI TCCGGA 1 cut(s) 368
AoxI GGCC 4 cut(s) 1153, 1404, 1531, 1929
ApaI GGGCCC 1 cut(s) 1408
ApaLI GTGCAC 1 cut(s) 1996
ApeKI GCWGC 9 cut(s) 548, 780, 818, 1178, 1442, 2162, 2165, 2273, 2375
ApoI RAATTY 7 cut(s) 457, 660, 840, 932, 1580, 1750, 2113
ArsI GACNNNNNNTTYG 2 cut(s) 25, 57
Asp700I GAANNNNTTC 1 cut(s) 2043
AspLEI GCGC 3 cut(s) 1626, 2273, 2333
AspS9I GGNCC 7 cut(s) 371, 1404, 1405, 1531, 1551, 1713, 1929
AsuHPI GGTGA 2 cut(s) 1347, 2300
AsuII TTCGAA 2 cut(s) 512, 2086
AvaI CYCGRG 2 cut(s) 374, 1446
AvaII GGWCC 3 cut(s) 371, 1551, 1713
BaeGI GKGCMC 3 cut(s) 1408, 2000, 2256
BalI TGGCCA 1 cut(s) 1155
BamHI GGATCC 1 cut(s) 2413
BanII GRGCYC 3 cut(s) 201, 368, 1408
BbsI GAAGAC 2 cut(s) 159, 1276
Bbv12I GWGCWC 4 cut(s) 201, 541, 2000, 2314
BbvCI CCTCAGC 1 cut(s) 278
BbvI GCAGC 9 cut(s) 560, 767, 830, 1190, 1429, 2149, 2177, 2285, 2362
BccI CCATC 6 cut(s) 440, 623, 745, 788, 1250, 1483
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 3 cut(s) 173, 1108, 1498
BciVI GTATCC 1 cut(s) 1318
BclI TGATCA 2 cut(s) 787, 2260
BcoDI GTCTC 6 cut(s) 26, 57, 371, 421, 441, 2285
BfaI CTAG 7 cut(s) 1086, 1412, 1502, 1967, 2126, 2195, 2307
BfmI CTRYAG 6 cut(s) 387, 546, 781, 1002, 1570, 2163
BfrI CTTAAG 1 cut(s) 1261
BfuI GTATCC 1 cut(s) 1318
BglI GCCNNNNNGGC 1 cut(s) 1928
BlpI GCTNAGC 1 cut(s) 2207
Bme1390I CCNGG 3 cut(s) 173, 1108, 1498
Bme18I GGWCC 3 cut(s) 371, 1551, 1713
BmeT110I CYCGRG 2 cut(s) 374, 1446
BmgT120I GGNCC 7 cut(s) 371, 1404, 1405, 1531, 1551, 1713, 1929
BmiI GGNNCC 9 cut(s) 136, 142, 367, 373, 763, 1406, 1930, 2361, 2415
BmrFI CCNGG 3 cut(s) 173, 1108, 1498
BmsI GCATC 6 cut(s) 70, 214, 1349, 1556, 1825, 2140
BpiI GAAGAC 2 cut(s) 159, 1276
BpmI CTGGAG 4 cut(s) 91, 194, 969, 1800
Bpu10I CCTNAGC 3 cut(s) 278, 345, 2018
Bpu1102I GCTNAGC 1 cut(s) 2207
Bpu14I TTCGAA 2 cut(s) 512, 2086
Bsa29I ATCGAT 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 1231
BsaI GGTCTC 3 cut(s) 26, 57, 2285
BsaJI CCNNGG 7 cut(s) 1106, 1107, 1143, 1302, 1923, 2317, 2363
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 8 cut(s) 119, 149, 1628, 1658, 2061, 2091, 2175, 2205
Bsc4I CCNNNNNNNGG 5 cut(s) 330, 1112, 1289, 1560, 2234
Bse1I ACTGG 7 cut(s) 781, 1008, 1597, 1993, 2113, 2272, 2277
Bse3DI GCAATG 3 cut(s) 1208, 1521, 2211
BseAI TCCGGA 1 cut(s) 368
BseBI CCWGG 3 cut(s) 173, 1108, 1498
BseCI ATCGAT 1 cut(s) 627
BseDI CCNNGG 7 cut(s) 1106, 1107, 1143, 1302, 1923, 2317, 2363
BseGI GGATG 4 cut(s) 85, 799, 1657, 1840
BseLI CCNNNNNNNGG 5 cut(s) 330, 1112, 1289, 1560, 2234
BseMI GCAATG 3 cut(s) 1208, 1521, 2211
BseMII CTCAG 9 cut(s) 242, 269, 656, 885, 984, 1155, 2157, 2198, 2423
BseNI ACTGG 7 cut(s) 781, 1008, 1597, 1993, 2113, 2272, 2277
BseRI GAGGAG 2 cut(s) 94, 2085
BseSI GKGCMC 3 cut(s) 1408, 2000, 2256
BseXI GCAGC 9 cut(s) 560, 767, 830, 1190, 1429, 2149, 2177, 2285, 2362
BseYI CCCAGC 2 cut(s) 162, 1197
BsgI GTGCAG 2 cut(s) 1901, 2361
Bsh1236I CGCG 1 cut(s) 2333
BshFI GGCC 4 cut(s) 1155, 1406, 1533, 1931
BshVI ATCGAT 1 cut(s) 627
BsiHKAI GWGCWC 4 cut(s) 201, 541, 2000, 2314
BsiHKCI CYCGRG 2 cut(s) 374, 1446
BsiSI CCGG 4 cut(s) 132, 138, 369, 1587
BslFI GGGAC 3 cut(s) 646, 1180, 2136
BslI CCNNNNNNNGG 5 cut(s) 330, 1112, 1289, 1560, 2234
BsmAI GTCTC 6 cut(s) 26, 57, 371, 421, 441, 2285
BsmBI CGTCTC 1 cut(s) 371
BsmFI GGGAC 3 cut(s) 646, 1180, 2136
BsnI GGCC 4 cut(s) 1155, 1406, 1533, 1931
Bso31I GGTCTC 3 cut(s) 26, 57, 2285
BsoBI CYCGRG 2 cut(s) 374, 1446
Bsp119I TTCGAA 2 cut(s) 512, 2086
Bsp120I GGGCCC 1 cut(s) 1404
Bsp1286I GDGCHC 7 cut(s) 201, 368, 541, 1408, 2000, 2256, 2314
Bsp13I TCCGGA 1 cut(s) 368
Bsp1407I TGTACA 1 cut(s) 1939
Bsp1720I GCTNAGC 1 cut(s) 2207
BspACI CCGC 6 cut(s) 84, 667, 816, 1249, 1408, 2357
BspANI GGCC 4 cut(s) 1155, 1406, 1533, 1931
BspCNI CTCAG 9 cut(s) 243, 270, 655, 886, 985, 1156, 2156, 2199, 2422
BspDI ATCGAT 1 cut(s) 627
BspEI TCCGGA 1 cut(s) 368
BspFNI CGCG 1 cut(s) 2333
BspHI TCATGA 1 cut(s) 918
BspLI GGNNCC 9 cut(s) 136, 142, 367, 373, 763, 1406, 1930, 2361, 2415
BspMAI CTGCAG 3 cut(s) 550, 785, 2167
BspPI GGATC 6 cut(s) 470, 947, 2290, 2396, 2408, 2421
BspT104I TTCGAA 2 cut(s) 512, 2086
BspTI CTTAAG 1 cut(s) 1261
BspTNI GGTCTC 3 cut(s) 26, 57, 2285
BsrDI GCAATG 3 cut(s) 1208, 1521, 2211
BsrGI TGTACA 1 cut(s) 1939
BsrI ACTGG 7 cut(s) 781, 1008, 1597, 1993, 2113, 2272, 2277
BssECI CCNNGG 7 cut(s) 1106, 1107, 1143, 1302, 1923, 2317, 2363
BssNAI GTATAC 1 cut(s) 1984
BssT1I CCWWGG 4 cut(s) 1143, 1302, 1923, 2317
Bst1107I GTATAC 1 cut(s) 1984
Bst2UI CCWGG 3 cut(s) 173, 1108, 1498
Bst4CI ACNGT 2 cut(s) 391, 1574
Bst6I CTCTTC 2 cut(s) 1734, 1772
BstAFI CTTAAG 1 cut(s) 1261
BstAPI GCANNNNNTGC 2 cut(s) 889, 2159
BstAUI TGTACA 1 cut(s) 1939
BstBAI YACGTR 1 cut(s) 1231
BstBI TTCGAA 2 cut(s) 512, 2086
BstC8I GCNNGC 9 cut(s) 201, 285, 537, 609, 692, 1299, 1408, 1788, 2314
BstF5I GGATG 4 cut(s) 85, 799, 1657, 1840
BstFNI CGCG 1 cut(s) 2333
BstHHI GCGC 3 cut(s) 1626, 2273, 2333
BstMAI GTCTC 6 cut(s) 26, 57, 371, 421, 441, 2285
BstNI CCWGG 3 cut(s) 173, 1108, 1498
BstNSI RCATGY 3 cut(s) 563, 1301, 2461
BstSCI CCNGG 3 cut(s) 171, 1106, 1496
BstSFI CTRYAG 6 cut(s) 387, 546, 781, 1002, 1570, 2163
BstSLI GKGCMC 3 cut(s) 1408, 2000, 2256
BstUI CGCG 1 cut(s) 2333
BstV1I GCAGC 9 cut(s) 560, 767, 830, 1190, 1429, 2149, 2177, 2285, 2362
BstV2I GAAGAC 2 cut(s) 159, 1276
BstX2I RGATCY 3 cut(s) 952, 2282, 2413
BstYI RGATCY 3 cut(s) 952, 2282, 2413
BstZ17I GTATAC 1 cut(s) 1984
Bsu15I ATCGAT 1 cut(s) 627
BsuI GTATCC 1 cut(s) 1318
BsuRI GGCC 4 cut(s) 1155, 1406, 1533, 1931
BsuTUI ATCGAT 1 cut(s) 627
BtsCI GGATG 4 cut(s) 85, 799, 1657, 1840
BtsI GCAGTG 2 cut(s) 790, 1998
Cac8I GCNNGC 9 cut(s) 201, 285, 537, 609, 692, 1299, 1408, 1788, 2314
CciI TCATGA 1 cut(s) 918
CfoI GCGC 3 cut(s) 1626, 2273, 2333
Cfr13I GGNCC 7 cut(s) 371, 1404, 1405, 1531, 1551, 1713, 1929
ClaI ATCGAT 1 cut(s) 627
Csp6I GTAC 3 cut(s) 1228, 1482, 1940
CviQI GTAC 3 cut(s) 1228, 1482, 1940
EaeI YGGCCR 1 cut(s) 1153
Eam1104I CTCTTC 2 cut(s) 1734, 1772
EarI CTCTTC 2 cut(s) 1734, 1772
Ecl136II GAGCTC 1 cut(s) 199
Eco130I CCWWGG 4 cut(s) 1143, 1302, 1923, 2317
Eco24I GRGCYC 3 cut(s) 201, 368, 1408
Eco31I GGTCTC 3 cut(s) 26, 57, 2285
Eco47I GGWCC 3 cut(s) 371, 1551, 1713
Eco53kI GAGCTC 1 cut(s) 199
Eco57I CTGAAG 6 cut(s) 588, 1490, 1758, 1776, 2041, 2114
Eco88I CYCGRG 2 cut(s) 374, 1446
EcoICRI GAGCTC 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 1750
EcoRII CCWGG 3 cut(s) 171, 1106, 1496
EcoT14I CCWWGG 4 cut(s) 1143, 1302, 1923, 2317
EcoT38I GRGCYC 3 cut(s) 201, 368, 1408
ErhI CCWWGG 4 cut(s) 1143, 1302, 1923, 2317
Esp3I CGTCTC 1 cut(s) 371
FaqI GGGAC 3 cut(s) 646, 1180, 2136
FauI CCCGC 2 cut(s) 1256, 1415
FauNDI CATATG 1 cut(s) 2131
FbaI TGATCA 2 cut(s) 787, 2260
FblI GTMKAC 1 cut(s) 1983
FokI GGATG 4 cut(s) 92, 806, 1664, 1847
FriOI GRGCYC 3 cut(s) 201, 368, 1408
FspBI CTAG 7 cut(s) 1086, 1412, 1502, 1967, 2126, 2195, 2307
GlaI GCGC 3 cut(s) 1625, 2272, 2332
GsaI CCCAGC 2 cut(s) 166, 1201
GsuI CTGGAG 4 cut(s) 91, 194, 969, 1800
HaeIII GGCC 4 cut(s) 1155, 1406, 1533, 1931
HapII CCGG 4 cut(s) 132, 138, 369, 1587
HhaI GCGC 3 cut(s) 1626, 2273, 2333
Hin6I GCGC 3 cut(s) 1624, 2271, 2331
HinP1I GCGC 3 cut(s) 1624, 2271, 2331
HincII GTYRAC 2 cut(s) 318, 772
HindII GTYRAC 2 cut(s) 318, 772
HindIII AAGCTT 3 cut(s) 398, 588, 1788
HpaI GTTAAC 1 cut(s) 318
HpaII CCGG 4 cut(s) 132, 138, 369, 1587
HphI GGTGA 2 cut(s) 1347, 2300
Hpy166II GTNNAC 7 cut(s) 318, 772, 1466, 1984, 1998, 2106, 2137
Hpy8I GTNNAC 7 cut(s) 318, 772, 1466, 1984, 1998, 2106, 2137
HpyAV CCTTC 7 cut(s) 508, 563, 1048, 1283, 1861, 1898, 2089
HpyCH4III ACNGT 2 cut(s) 391, 1574
HpyCH4IV ACGT 5 cut(s) 380, 1077, 1230, 1387, 1672
HpySE526I ACGT 5 cut(s) 380, 1077, 1230, 1387, 1672
HspAI GCGC 3 cut(s) 1624, 2271, 2331
Kpn2I TCCGGA 1 cut(s) 368
Ksp22I TGATCA 2 cut(s) 787, 2260
KspAI GTTAAC 1 cut(s) 318
LmnI GCTCC 6 cut(s) 116, 140, 146, 371, 1147, 1687
Lsp1109I GCAGC 9 cut(s) 560, 767, 830, 1190, 1429, 2149, 2177, 2285, 2362
LweI GCATC 6 cut(s) 70, 214, 1349, 1556, 1825, 2140
MaeI CTAG 7 cut(s) 1086, 1412, 1502, 1967, 2126, 2195, 2307
MaeII ACGT 5 cut(s) 380, 1077, 1230, 1387, 1672
MaeIII GTNAC 1 cut(s) 1383
MflI RGATCY 3 cut(s) 952, 2282, 2413
MhlI GDGCHC 7 cut(s) 201, 368, 541, 1408, 2000, 2256, 2314
MlsI TGGCCA 1 cut(s) 1155
MluNI TGGCCA 1 cut(s) 1155
MlyI GAGTC 3 cut(s) 122, 423, 2182
MmeI TCCRAC 7 cut(s) 150, 240, 709, 1093, 1629, 2047, 2366
Mox20I TGGCCA 1 cut(s) 1155
MroI TCCGGA 1 cut(s) 368
MroXI GAANNNNTTC 1 cut(s) 2043
MscI TGGCCA 1 cut(s) 1155
MseI TTAA 9 cut(s) 243, 317, 455, 711, 1262, 1709, 2024, 2337, 2473
MslI CAYNNNNRTG 1 cut(s) 1539
Msp20I TGGCCA 1 cut(s) 1155
MspA1I CMGCKG 4 cut(s) 86, 551, 667, 1181
MspCI CTTAAG 1 cut(s) 1261
MspI CCGG 4 cut(s) 132, 138, 369, 1587
MspR9I CCNGG 3 cut(s) 173, 1108, 1498
MvaI CCWGG 3 cut(s) 173, 1108, 1498
MvnI CGCG 1 cut(s) 2333
NdeI CATATG 1 cut(s) 2131
NlaIV GGNNCC 9 cut(s) 136, 142, 367, 373, 763, 1406, 1930, 2361, 2415
NmeAIII GCCGAG 1 cut(s) 220
NspI RCATGY 3 cut(s) 563, 1301, 2461
NspV TTCGAA 2 cut(s) 512, 2086
PaeI GCATGC 1 cut(s) 1301
PagI TCATGA 1 cut(s) 918
PasI CCCWGGG 1 cut(s) 1107
PciI ACATGT 1 cut(s) 2457
PdmI GAANNNNTTC 1 cut(s) 2043
PfeI GAWTC 8 cut(s) 116, 122, 178, 247, 491, 670, 1526, 1724
PflMI CCANNNNNTGG 1 cut(s) 2234
PleI GAGTC 3 cut(s) 122, 422, 2182
PpsI GAGTC 3 cut(s) 122, 422, 2182
Ppu21I YACGTR 1 cut(s) 1231
PscI ACATGT 1 cut(s) 2457
PsiI TTATAA 2 cut(s) 846, 1070
Psp124BI GAGCTC 1 cut(s) 201
Psp1406I AACGTT 1 cut(s) 1077
Psp6I CCWGG 3 cut(s) 171, 1106, 1496
PspFI CCCAGC 2 cut(s) 162, 1197
PspGI CCWGG 3 cut(s) 171, 1106, 1496
PspN4I GGNNCC 9 cut(s) 136, 142, 367, 373, 763, 1406, 1930, 2361, 2415
PspOMI GGGCCC 1 cut(s) 1404
PspPI GGNCC 7 cut(s) 371, 1404, 1405, 1531, 1551, 1713, 1929
PstI CTGCAG 3 cut(s) 550, 785, 2167
PsuI RGATCY 3 cut(s) 952, 2282, 2413
PvuII CAGCTG 2 cut(s) 551, 1181
RsaI GTAC 3 cut(s) 1229, 1483, 1941
RsaNI GTAC 3 cut(s) 1228, 1482, 1940
RseI CAYNNNNRTG 1 cut(s) 1539
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 9 cut(s) 243, 317, 455, 711, 1262, 1709, 2024, 2337, 2473
Sau96I GGNCC 7 cut(s) 371, 1404, 1405, 1531, 1551, 1713, 1929
SchI GAGTC 3 cut(s) 122, 423, 2182
ScrFI CCNGG 3 cut(s) 173, 1108, 1498
SduI GDGCHC 7 cut(s) 201, 368, 541, 1408, 2000, 2256, 2314
SfaNI GCATC 6 cut(s) 70, 214, 1349, 1556, 1825, 2140
SfcI CTRYAG 6 cut(s) 387, 546, 781, 1002, 1570, 2163
SfuI TTCGAA 2 cut(s) 512, 2086
SinI GGWCC 3 cut(s) 371, 1551, 1713
SmiMI CAYNNNNRTG 1 cut(s) 1539
SmlI CTYRAG 1 cut(s) 1261
SmoI CTYRAG 1 cut(s) 1261
SphI GCATGC 1 cut(s) 1301
SsiI CCGC 6 cut(s) 84, 667, 816, 1249, 1408, 2357
SspMI CTAG 7 cut(s) 1086, 1412, 1502, 1967, 2126, 2195, 2307
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 171, 1106, 1496
StyI CCWWGG 4 cut(s) 1143, 1302, 1923, 2317
TaaI ACNGT 2 cut(s) 391, 1574
TaiI ACGT 5 cut(s) 383, 1080, 1233, 1390, 1675
TaqI TCGA 6 cut(s) 189, 466, 512, 627, 1659, 2086
TaqII GACCGA 1 cut(s) 1539
TatI WGTACW 1 cut(s) 1939
TauI GCSGC 2 cut(s) 86, 818
TfiI GAWTC 8 cut(s) 116, 122, 178, 247, 491, 670, 1526, 1724
Tru1I TTAA 9 cut(s) 243, 317, 455, 711, 1262, 1709, 2024, 2337, 2473
Tru9I TTAA 9 cut(s) 243, 317, 455, 711, 1262, 1709, 2024, 2337, 2473
TseI GCWGC 9 cut(s) 548, 780, 818, 1178, 1442, 2162, 2165, 2273, 2375
TspGWI ACGGA 1 cut(s) 468
Van91I CCANNNNNTGG 1 cut(s) 2234
Vha464I CTTAAG 1 cut(s) 1261
VneI GTGCAC 1 cut(s) 1996
VpaK11BI GGWCC 3 cut(s) 371, 1551, 1713
XapI RAATTY 7 cut(s) 457, 660, 840, 932, 1580, 1750, 2113
XbaI TCTAGA 1 cut(s) 1966
XceI RCATGY 3 cut(s) 563, 1301, 2461
XmiI GTMKAC 1 cut(s) 1983
XmnI GAANNNNTTC 1 cut(s) 2043
XspI CTAG 7 cut(s) 1086, 1412, 1502, 1967, 2126, 2195, 2307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.