Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

12959349 .. 12962771

Gene Structure 3423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGGGATTCTGGGGACTTGAAGTGAAACCTGGGAAGCCTCAAGCTTATAATCCAAAAAATGAACAAGGAAAGATTCACGTGACCCAGGCAACTCTAGGTACGGGTTTGAGCAAAGAAAAGAGTGTGATTCAGTGTTCAATAGGAGACAAGGCTCCTATTGCTTTGTGTTCATTGTTGCCAAACAAAATCGAATGTTGCCCTCTGAATCTTGAGTTTGACGATGATGATGAGCCAGTGGAATTCACCGTGACTGGTGACAGAAGTATCCACTTGTCTGGATTCTTGGAGTATTATCAGGACGATGAAGATGATTATGAGCATGATGAAGATGATTCAGATGGTATTGATGTTGGTGAGTCTGAGGAAGACGATTCGTGTGAATATGATAGTGAAGAGGATGAGCAATTGGATGAATTTGAAGACTTCCTTGATAGCAATCTTGAAAGGTATCGGAATGCTGCTGCCCCAAAGAGTGGAGTTATAATTGAGGAGATAGAAGATGAAGAGAAACCTGCCAAAGATAATAAGGCAAAACAAACCAAGAAGAAGAGTCAAGCTAGCGAAGGTGAGAATGCAAAGAAACAAATCGTTGCCATAGAGGGTGCCCATGTTCCAGTTTTGGAAAGCGAAGATGAAGACGAAGACGGTTTACCTATTCCTAAAGGAAAATCATCTGAAGTAGAGAATGCGTCAGGTGAGAAGATGGTTGTAGATAATGACGAACAAGGTAGTAACAAGAAACGGAAGGCCAAGGCTGCTGAGCAAGATGATGGACAAGAAAGTGCAAACAAGAGTAAAAAGAAGAAAAATCAGAAAGAGAAGAAGAAAGGGGAAAATGTCTTAAATGAGGAAGCTGGACAAGTTCAGACGGGAAATGTTCTGAAGAAGCAGGATATTAGCCAAATTTCTTCAAACACAAAAGCTCAAGATGGAACTGCAAACAATGCCATGAGTGAAAGCTCCAAGACCCCAGATAAATCTGCTGAGAAGAAAACTAAAAATAAGAAAAAGAAGAAACCAAGTGACGAAGCTGCAGAAATTTCTGGTACTGTTGAGAAGCAAACCCCAGCGGACTCCAAGTCTTCTCAAGTACGGACATACCCAAATGGGCTCATTGTTGAAGAGTTGAGCATGGGAAAACCCAACGGCAAGAGAGCTGATCCTGGAAAAACGGTTTCTGTGCGCTATATTGGAAAACTTCAGAAGAATGGGAAGATTTTCGATTCCAACATTGGAAAATCACCATTTAAGTTTCGTCTAGGTATTGGATCAGTCATTAAGGGATGGGATGTTGGAGTTAATGGCATGCGCGTTGGTGACAAAAGGAAGCTTACAATTCCTCCATCAATGGGGTATGGTGTGAAGGGTGCTGGTGGCCAGATTCCTCCTAATTCTTGGCTGACTTTTGATGTCGAACTGATTAATGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

477

Amino Acids

52.22

Weight (kDa)

4.94

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	3 - 95	3.8e-22	Nucleoplasmin-like domain
FKBP_C	PF00254	384 - 434	2.1e-11	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	48, 482
Acc36I	ACCTGC	1 cut(s)	520
AccB1I	GGYRCC	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccII	CGCG	1 cut(s)	1311
AciI	CCGC	1 cut(s)	1070
AclWI	GGATC	2 cut(s)	1154, 1276
AcoI	YGGCCR	1 cut(s)	1375
AcsI	RAATTY	4 cut(s)	239, 413, 903, 1038
AcuI	CTGAAG	3 cut(s)	696, 902, 1184
AcvI	CACGTG	1 cut(s)	79
AfaI	GTAC	3 cut(s)	100, 1048, 1092
AfiI	CCNNNNNNNGG	2 cut(s)	473, 1349
AgsI	TTSAA	7 cut(s)	20, 138, 419, 443, 912, 1121, 1430
AhdI	GACNNNNNGTC	1 cut(s)	1078
AjnI	CCWGG	3 cut(s)	28, 84, 1162
AluBI	AGCT	8 cut(s)	44, 557, 854, 923, 960, 1031, 1157, 1330
AluI	AGCT	8 cut(s)	44, 557, 854, 923, 960, 1031, 1157, 1330
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	1154, 1276
AoxI	GGCC	2 cut(s)	747, 1375
ApeKI	GCWGC	4 cut(s)	458, 461, 755, 1031
ApoI	RAATTY	4 cut(s)	239, 413, 903, 1038
AseI	ATTAAT	1 cut(s)	1422
Asp700I	GAANNNNTTC	1 cut(s)	1217
AspLEI	GCGC	2 cut(s)	1185, 1311
AsuHPI	GGTGA	7 cut(s)	235, 266, 365, 578, 707, 1233, 1328
AsuNHI	GCTAGC	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	607
BaeI	ACNNNNGTAYC	2 cut(s)	247, 280
BalI	TGGCCA	1 cut(s)	1377
BanI	GGYRCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	1113
BarI	GAAGNNNNNNTAC	2 cut(s)	633, 665
BbrPI	CACGTG	1 cut(s)	79
BbsI	GAAGAC	5 cut(s)	372, 426, 642, 648, 1074
BbvI	GCAGC	4 cut(s)	445, 448, 742, 1018
BccI	CCATC	6 cut(s)	332, 697, 764, 923, 1278, 1351
BceAI	ACGGC	1 cut(s)	1162
BciT130I	CCWGG	3 cut(s)	30, 86, 1164
BciVI	GTATCC	1 cut(s)	275
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	3 cut(s)	95, 558, 1259
BfmI	CTRYAG	1 cut(s)	1032
BfuAI	ACCTGC	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	4 cut(s)	459, 462, 756, 1032
BlpI	GCTNAGC	1 cut(s)	759
BlsI	GCNGC	4 cut(s)	460, 463, 757, 1033
Bme1390I	CCNGG	3 cut(s)	30, 86, 1164
BmeRI	GACNNNNNGTC	1 cut(s)	1078
BmiI	GGNNCC	2 cut(s)	153, 604
BmrFI	CCNGG	3 cut(s)	30, 86, 1164
BmtI	GCTAGC	1 cut(s)	561
BpiI	GAAGAC	5 cut(s)	372, 426, 642, 648, 1074
Bpu1102I	GCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	4 cut(s)	24, 230, 909, 1071
BsaAI	YACGTR	1 cut(s)	79
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	29, 84, 750
BsaXI	ACNNNNNCTCC	2 cut(s)	1324, 1354
Bsc4I	CCNNNNNNNGG	2 cut(s)	473, 1349
Bse1I	ACTGG	3 cut(s)	233, 256, 614
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	3 cut(s)	30, 86, 1164
BseDI	CCNNGG	3 cut(s)	29, 84, 750
BseGI	GGATG	4 cut(s)	403, 415, 1289, 1294
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	473, 1349
BseMII	CTCAG	3 cut(s)	351, 750, 975
BseNI	ACTGG	3 cut(s)	233, 256, 614
BseRI	GAGGAG	1 cut(s)	503
BseSI	GKGCMC	1 cut(s)	607
BseXI	GCAGC	4 cut(s)	445, 448, 742, 1018
BseYI	CCCAGC	1 cut(s)	1066
Bsh1236I	CGCG	1 cut(s)	1311
BshFI	GGCC	2 cut(s)	749, 1377
BshNI	GGYRCC	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	473, 1349
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	3 cut(s)	460, 577, 691
BsnI	GGCC	2 cut(s)	749, 1377
Bsp1286I	GDGCHC	2 cut(s)	607, 1113
Bsp143I	GATC	2 cut(s)	1159, 1268
Bsp1720I	GCTNAGC	1 cut(s)	759
BspACI	CCGC	1 cut(s)	1070
BspANI	GGCC	2 cut(s)	749, 1377
BspCNI	CTCAG	3 cut(s)	352, 751, 976
BspFNI	CGCG	1 cut(s)	1311
BspLI	GGNNCC	2 cut(s)	153, 604
BspMAI	CTGCAG	1 cut(s)	1036
BspMI	ACCTGC	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	561
BspPI	GGATC	2 cut(s)	1154, 1276
BspT107I	GGYRCC	1 cut(s)	602
BsrI	ACTGG	3 cut(s)	233, 256, 614
BssECI	CCNNGG	3 cut(s)	29, 84, 750
BssMI	GATC	2 cut(s)	1159, 1268
BssT1I	CCWWGG	1 cut(s)	750
Bst2UI	CCWGG	3 cut(s)	30, 86, 1164
Bst4CI	ACNGT	4 cut(s)	247, 647, 1051, 1174
Bst6I	CTCTTC	4 cut(s)	387, 498, 542, 1116
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	2 cut(s)	559, 1307
BstDEI	CTNAG	3 cut(s)	360, 759, 984
BstF5I	GGATG	4 cut(s)	403, 415, 1289, 1294
BstFNI	CGCG	1 cut(s)	1311
BstHHI	GCGC	2 cut(s)	1185, 1311
BstKTI	GATC	2 cut(s)	1162, 1271
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	1159, 1268
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 755, 944
BstNI	CCWGG	3 cut(s)	30, 86, 1164
BstNSI	RCATGY	1 cut(s)	1309
BstSCI	CCNGG	3 cut(s)	28, 84, 1162
BstSFI	CTRYAG	1 cut(s)	1032
BstSLI	GKGCMC	1 cut(s)	607
BstUI	CGCG	1 cut(s)	1311
BstV1I	GCAGC	4 cut(s)	445, 448, 742, 1018
BstV2I	GAAGAC	5 cut(s)	372, 426, 642, 648, 1074
BstXI	CCANNNNNNTGG	1 cut(s)	275
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	749, 1377
BtsCI	GGATG	4 cut(s)	403, 415, 1289, 1294
BtsIMutI	CAGTG	2 cut(s)	137, 240
BveI	ACCTGC	1 cut(s)	520
Cac8I	GCNNGC	2 cut(s)	559, 1307
CfoI	GCGC	2 cut(s)	1185, 1311
CseI	GACGC	1 cut(s)	678
Csp6I	GTAC	3 cut(s)	99, 1047, 1091
CviAII	CATG	5 cut(s)	320, 608, 949, 1132, 1306
CviQI	GTAC	3 cut(s)	99, 1047, 1091
DdeI	CTNAG	3 cut(s)	360, 759, 984
DpnI	GATC	2 cut(s)	1161, 1270
DpnII	GATC	2 cut(s)	1159, 1268
DriI	GACNNNNNGTC	1 cut(s)	1078
EaeI	YGGCCR	1 cut(s)	1375
Eam1104I	CTCTTC	4 cut(s)	387, 498, 542, 1116
Eam1105I	GACNNNNNGTC	1 cut(s)	1078
EarI	CTCTTC	4 cut(s)	387, 498, 542, 1116
Eco130I	CCWWGG	1 cut(s)	750
Eco24I	GRGCYC	1 cut(s)	1113
Eco57I	CTGAAG	3 cut(s)	696, 902, 1184
Eco72I	CACGTG	1 cut(s)	79
EcoRI	GAATTC	1 cut(s)	239
EcoRII	CCWGG	3 cut(s)	28, 84, 1162
EcoT14I	CCWWGG	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	1113
ErhI	CCWWGG	1 cut(s)	750
FaeI	CATG	5 cut(s)	323, 611, 952, 1135, 1309
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	5 cut(s)	319, 607, 948, 1131, 1305
Fnu4HI	GCNGC	4 cut(s)	459, 462, 756, 1032
FokI	GGATG	4 cut(s)	410, 422, 1296, 1301
FriOI	GRGCYC	1 cut(s)	1113
Fsp4HI	GCNGC	4 cut(s)	459, 462, 756, 1032
FspBI	CTAG	3 cut(s)	95, 558, 1259
GlaI	GCGC	2 cut(s)	1184, 1310
GluI	GCNGC	4 cut(s)	459, 462, 756, 1032
GsaI	CCCAGC	1 cut(s)	1070
HaeIII	GGCC	2 cut(s)	749, 1377
HgaI	GACGC	1 cut(s)	678
HhaI	GCGC	2 cut(s)	1185, 1311
Hin1II	CATG	5 cut(s)	323, 611, 952, 1135, 1309
Hin6I	GCGC	2 cut(s)	1183, 1309
HinP1I	GCGC	2 cut(s)	1183, 1309
HindIII	AAGCTT	2 cut(s)	42, 1328
HphI	GGTGA	7 cut(s)	235, 266, 365, 578, 707, 1233, 1328
Hpy166II	GTNNAC	1 cut(s)	650
Hpy188I	TCNGA	9 cut(s)	204, 337, 361, 453, 676, 813, 867, 882, 1203
Hpy188III	TCNNGA	5 cut(s)	209, 276, 296, 440, 926
Hpy8I	GTNNAC	1 cut(s)	650
HpyAV	CCTTC	3 cut(s)	557, 739, 1357
HpyCH4III	ACNGT	4 cut(s)	247, 647, 1051, 1174
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	4 cut(s)	575, 785, 938, 1034
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 755, 944
HpyF3I	CTNAG	3 cut(s)	360, 759, 984
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	323, 611, 952, 1135, 1309
HspAI	GCGC	2 cut(s)	1183, 1309
Kzo9I	GATC	2 cut(s)	1159, 1268
LmnI	GCTCC	2 cut(s)	157, 965
Lsp1109I	GCAGC	4 cut(s)	445, 448, 742, 1018
MaeI	CTAG	3 cut(s)	95, 558, 1259
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	6 cut(s)	79, 247, 254, 731, 1022, 1316
MalI	GATC	2 cut(s)	1161, 1270
MboI	GATC	2 cut(s)	1159, 1268
MfeI	CAATTG	1 cut(s)	404
MhlI	GDGCHC	2 cut(s)	607, 1113
MlsI	TGGCCA	1 cut(s)	1377
MluCI	AATT	8 cut(s)	239, 404, 413, 483, 903, 1038, 1335, 1390
MluNI	TGGCCA	1 cut(s)	1377
MlyI	GAGTC	3 cut(s)	365, 559, 1067
MmeI	TCCRAC	2 cut(s)	1251, 1273
MnlI	CCTC	9 cut(s)	48, 210, 355, 388, 481, 592, 841, 1350, 1395
Mox20I	TGGCCA	1 cut(s)	1377
MroXI	GAANNNNTTC	1 cut(s)	1217
MscI	TGGCCA	1 cut(s)	1377
MseI	TTAA	5 cut(s)	842, 1248, 1278, 1299, 1422
Msp20I	TGGCCA	1 cut(s)	1377
MspA1I	CMGCKG	1 cut(s)	1070
MspR9I	CCNGG	3 cut(s)	30, 86, 1164
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	3 cut(s)	460, 577, 691
MvaI	CCWGG	3 cut(s)	30, 86, 1164
MvnI	CGCG	1 cut(s)	1311
MwoI	GCNNNNNNNGC	3 cut(s)	158, 755, 944
NdeII	GATC	2 cut(s)	1159, 1268
NheI	GCTAGC	1 cut(s)	557
NlaIII	CATG	5 cut(s)	323, 611, 952, 1135, 1309
NlaIV	GGNNCC	2 cut(s)	153, 604
NmuCI	GTSAC	5 cut(s)	79, 247, 254, 1022, 1316
NspI	RCATGY	1 cut(s)	1309
PaeI	GCATGC	1 cut(s)	1309
PctI	GAATGC	3 cut(s)	460, 577, 691
PdmI	GAANNNNTTC	1 cut(s)	1217
PfeI	GAWTC	9 cut(s)	6, 73, 127, 205, 279, 332, 371, 1223, 1381
PflMI	CCANNNNNTGG	1 cut(s)	473
PfoI	TCCNGGA	1 cut(s)	1162
PkrI	GCNGC	4 cut(s)	460, 463, 757, 1033
PleI	GAGTC	3 cut(s)	364, 558, 1067
PmaCI	CACGTG	1 cut(s)	79
PmlI	CACGTG	1 cut(s)	79
PpsI	GAGTC	3 cut(s)	364, 558, 1067
Ppu21I	YACGTR	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	1422
PsiI	TTATAA	2 cut(s)	48, 482
Psp6I	CCWGG	3 cut(s)	28, 84, 1162
PspCI	CACGTG	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	1066
PspGI	CCWGG	3 cut(s)	28, 84, 1162
PspN4I	GGNNCC	2 cut(s)	153, 604
PstI	CTGCAG	1 cut(s)	1036
RsaI	GTAC	3 cut(s)	100, 1048, 1092
RsaNI	GTAC	3 cut(s)	99, 1047, 1091
SaqAI	TTAA	5 cut(s)	842, 1248, 1278, 1299, 1422
SatI	GCNGC	4 cut(s)	459, 462, 756, 1032
Sau3AI	GATC	2 cut(s)	1159, 1268
SchI	GAGTC	3 cut(s)	365, 559, 1067
ScrFI	CCNGG	3 cut(s)	30, 86, 1164
SduI	GDGCHC	2 cut(s)	607, 1113
SfcI	CTRYAG	1 cut(s)	1032
SmlI	CTYRAG	4 cut(s)	39, 209, 924, 1086
SmoI	CTYRAG	4 cut(s)	39, 209, 924, 1086
SphI	GCATGC	1 cut(s)	1309
Sse9I	AATT	8 cut(s)	239, 404, 413, 483, 903, 1038, 1335, 1390
SsiI	CCGC	1 cut(s)	1070
SspMI	CTAG	3 cut(s)	95, 558, 1259
StyD4I	CCNGG	3 cut(s)	28, 84, 1162
StyI	CCWWGG	1 cut(s)	750
TaaI	ACNGT	4 cut(s)	247, 647, 1051, 1174
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	189, 1221, 1413
TasI	AATT	8 cut(s)	239, 404, 413, 483, 903, 1038, 1335, 1390
TfiI	GAWTC	9 cut(s)	6, 73, 127, 205, 279, 332, 371, 1223, 1381
Tru1I	TTAA	5 cut(s)	842, 1248, 1278, 1299, 1422
Tru9I	TTAA	5 cut(s)	842, 1248, 1278, 1299, 1422
TscAI	CASTG	2 cut(s)	137, 240
TseFI	GTSAC	5 cut(s)	79, 247, 254, 1022, 1316
TseI	GCWGC	4 cut(s)	458, 461, 755, 1031
Tsp45I	GTSAC	5 cut(s)	79, 247, 254, 1022, 1316
TspDTI	ATGAA	7 cut(s)	75, 159, 318, 339, 426, 516, 648
TspGWI	ACGGA	2 cut(s)	757, 1108
TspRI	CASTG	2 cut(s)	137, 240
Van91I	CCANNNNNTGG	1 cut(s)	473
VspI	ATTAAT	1 cut(s)	1422
XapI	RAATTY	4 cut(s)	239, 413, 903, 1038
XceI	RCATGY	1 cut(s)	1309
XmnI	GAANNNNTTC	1 cut(s)	1217
XspI	CTAG	3 cut(s)	95, 558, 1259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.