Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

5077411 .. 5081219

Gene Structure 3809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGCGGCTTTTGGGGAATTGAAGTAAAACCAGGGAAACAGTATCCTATTGAATTTCCAGAAGATGAGGAAGCAAGGCTTAGGATTACTCAGGCGACTTTAGGTCTTGGCGACTCAAAGGGGAGGAGCATAGTTCAGTGTTCCGTTGGAGATAAGAGTCCTATCTTTTTGTGTTCTTTGGTACCTAAGAAGAATGAATCGTGTCTCTTGAATCTTGAATTTGAGGATGATGACGAGGTGGTGACCTTTTCGGTGATTGGCAAACAAAGCGTCCATCTCTCTGGCTACTTTGAGACTTATGATGAAGGCGAAGCTGTTGGAGAAGGATATGAGTCAGATTCATATGAGGAGGATATTGGTGAGTCTGGGTCGGAGGAGTCATCAGATTATGGTAGTGATGACCAATATGAGCTAATTGATAGTGATCTTGACATGGACCGGTCTTCACCTCCTACCAAAAGTGGAGTTATAATTGAGGAGATTGAGGACGATGACAAGCCCACTAATGGAAAGGGTCAATCTAAACCTCTGCTTGAATTCAATCAATCAAATGGCTTTGAGGACAATACAAAAGGTGCAGGTGTCCCTGTTTTGGAAAGTGAAGATGACGATGGCTTTCCAATATCCACGAAAAACAAAACCAATATTGAGAAGCCTGAATCAGCAACAGGACACAGAGATAAAGTAACTGAGAAAACCAAGAAGAGGAAAGCAAAAGATGGTGATGATGCTGCTGGATTAAAAAGGAAGGTTGAAAATATTGACCAAGATCATCAAGAAGGGCAAAAGAAAAGTAAGAAAAAGCAGCAACTTAAGGATGGAAGTACTGATGAAAAGGAAAAGCAACCTGAGATCTTGAAGAGCAAAAATGAGCATGGACAACTGCTATCTAATAAGAAAGGAGAAAAAAAGAAGAACAAGAACAAGAACAAGAAGAAATCCCAGGAGATTGAAGAAAAAACTAATGCTGATCAAACTGCTGCTAGTATGGAAAAAACCAATGGCAAGTCATCTAAAGTGAGAACCTTTCCAAATGGATTGGTTATCGAGGAGGTCAGTGTTCGCTACATTGGGAAGCTAAAGAATGGGAAACAATTTGATGCAAATGTTAGAGGGCCACCGTTCAAATTCACATTAGGTGTAGGACAAGTTATATCAGGATGGGATGTTGGGGTTAAAGGTAAGTTTCTAAACGTGAAAACTTCACTTATATCTGATTTGCAATTTTACAAAGTATTAGTTGTTGCATCTTCTAAAACATATCTACCTCCAGGTATGGACAGAGAGGTGCTCCCCTGCGATACCACCAAACTCATGGCTTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

442

Amino Acids

48.85

Weight (kDa)

5.18

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	4 - 97	1.8e-25	Nucleoplasmin-like domain
FKBP_C	PF00254	351 - 395	1.2e-10	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AciI	CCGC	1 cut(s)	6
AcsI	RAATTY	4 cut(s)	53, 218, 536, 1127
AfaI	GTAC	2 cut(s)	183, 826
AfiI	CCNNNNNNNGG	3 cut(s)	506, 592, 705
AflII	CTTAAG	1 cut(s)	812
AgeI	ACCGGT	1 cut(s)	438
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	31, 942, 1270
AluBI	AGCT	3 cut(s)	314, 412, 1078
AluI	AGCT	3 cut(s)	314, 412, 1078
Alw21I	GWGCWC	1 cut(s)	1293
Alw26I	GTCTC	2 cut(s)	209, 287
AoxI	GGCC	1 cut(s)	1115
ApeKI	GCWGC	3 cut(s)	731, 805, 980
ApoI	RAATTY	4 cut(s)	53, 218, 536, 1127
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsiGI	ACCGGT	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	436, 1115
AsuHPI	GGTGA	5 cut(s)	253, 265, 371, 438, 734
AvaII	GGWCC	1 cut(s)	436
BanI	GGYRCC	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	1293
BbvI	GCAGC	3 cut(s)	718, 817, 967
BccI	CCATC	5 cut(s)	282, 605, 713, 812, 1155
BciT130I	CCWGG	3 cut(s)	33, 944, 1272
BciVI	GTATCC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	970
BcoDI	GTCTC	2 cut(s)	209, 287
BfaI	CTAG	1 cut(s)	984
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	54
BglII	AGATCT	1 cut(s)	852
BisI	GCNGC	4 cut(s)	7, 732, 806, 981
BlsI	GCNGC	4 cut(s)	8, 733, 807, 982
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	33, 944, 1272
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	436, 1115
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	3 cut(s)	33, 944, 1272
BmsI	GCATC	3 cut(s)	718, 1090, 1256
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	1275, 1307
BpmI	CTGGAG	1 cut(s)	1254
Bpu10I	CCTNAGC	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	32, 942
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 592, 705
Bse118I	RCCGGY	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	3 cut(s)	33, 944, 1272
BseDI	CCNNGG	2 cut(s)	32, 942
BseGI	GGATG	4 cut(s)	232, 823, 1166, 1171
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	506, 592, 705
BseMII	CTCAG	3 cut(s)	104, 681, 840
BseRI	GAGGAG	5 cut(s)	139, 362, 389, 491, 1064
BseXI	GCAGC	3 cut(s)	718, 817, 967
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	1117
BshNI	GGYRCC	1 cut(s)	181
BshTI	ACCGGT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	1293
BsiSI	CCGG	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	569
BslI	CCNNNNNNNGG	3 cut(s)	506, 592, 705
BsmAI	GTCTC	2 cut(s)	209, 287
BsmFI	GGGAC	1 cut(s)	569
BsnI	GGCC	1 cut(s)	1117
Bsp1286I	GDGCHC	1 cut(s)	1293
Bsp143I	GATC	4 cut(s)	424, 769, 852, 970
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	1117
BspCNI	CTCAG	3 cut(s)	103, 682, 841
BspLI	GGNNCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	854
BspT107I	GGYRCC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	32, 942
BssMI	GATC	4 cut(s)	424, 769, 852, 970
Bst2UI	CCWGG	3 cut(s)	33, 944, 1272
Bst4CI	ACNGT	2 cut(s)	42, 1122
Bst6I	CTCTTC	2 cut(s)	698, 854
BstAFI	CTTAAG	1 cut(s)	812
BstDEI	CTNAG	5 cut(s)	80, 90, 186, 690, 849
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	4 cut(s)	232, 823, 1166, 1171
BstKTI	GATC	4 cut(s)	427, 772, 855, 973
BstMAI	GTCTC	2 cut(s)	209, 287
BstMBI	GATC	4 cut(s)	424, 769, 852, 970
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	3 cut(s)	33, 944, 1272
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	31, 942, 1270
BstV1I	GCAGC	3 cut(s)	718, 817, 967
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	852
BstXI	CCANNNNNNTGG	2 cut(s)	281, 1315
BstYI	RGATCY	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	1117
BtsCI	GGATG	4 cut(s)	232, 823, 1166, 1171
BtsIMutI	CAGTG	2 cut(s)	143, 1063
BveI	ACCTGC	1 cut(s)	569
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	436, 1115
CseI	GACGC	1 cut(s)	259
Csp6I	GTAC	2 cut(s)	182, 825
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	3 cut(s)	433, 875, 1315
CviQI	GTAC	2 cut(s)	182, 825
DdeI	CTNAG	5 cut(s)	80, 90, 186, 690, 849
DpnI	GATC	4 cut(s)	426, 771, 854, 972
DpnII	GATC	4 cut(s)	424, 769, 852, 970
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	698, 854
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	2 cut(s)	698, 854
Eco47I	GGWCC	1 cut(s)	436
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	3 cut(s)	31, 942, 1270
FaeI	CATG	3 cut(s)	436, 878, 1318
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	1 cut(s)	569
FatI	CATG	3 cut(s)	432, 874, 1314
FauNDI	CATATG	1 cut(s)	343
FbaI	TGATCA	1 cut(s)	970
Fnu4HI	GCNGC	4 cut(s)	7, 732, 806, 981
FokI	GGATG	4 cut(s)	239, 830, 1173, 1178
Fsp4HI	GCNGC	4 cut(s)	7, 732, 806, 981
FspBI	CTAG	1 cut(s)	984
GluI	GCNGC	4 cut(s)	7, 732, 806, 981
GsuI	CTGGAG	1 cut(s)	1254
HaeIII	GGCC	1 cut(s)	1117
HapII	CCGG	1 cut(s)	439
HgaI	GACGC	1 cut(s)	259
Hin1II	CATG	3 cut(s)	436, 878, 1318
HinfI	GANTC	9 cut(s)	113, 157, 197, 211, 332, 338, 362, 377, 659
HpaII	CCGG	1 cut(s)	439
HphI	GGTGA	5 cut(s)	253, 265, 371, 438, 734
Hpy188I	TCNGA	4 cut(s)	337, 373, 385, 1216
Hpy188III	TCNNGA	7 cut(s)	59, 208, 215, 428, 776, 856, 1158
HpyAV	CCTTC	4 cut(s)	299, 317, 742, 773
HpyCH4III	ACNGT	2 cut(s)	42, 1122
HpyCH4IV	ACGT	1 cut(s)	1194
HpyCH4V	TGCA	4 cut(s)	578, 1103, 1222, 1247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	5 cut(s)	80, 90, 186, 690, 849
HpySE526I	ACGT	1 cut(s)	1194
Hsp92II	CATG	3 cut(s)	436, 878, 1318
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	424, 769, 852, 970
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	2 cut(s)	126, 1296
Lsp1109I	GCAGC	3 cut(s)	718, 817, 967
LweI	GCATC	3 cut(s)	718, 1090, 1256
MaeI	CTAG	1 cut(s)	984
MaeII	ACGT	1 cut(s)	1194
MaeIII	GTNAC	2 cut(s)	241, 685
MalI	GATC	4 cut(s)	426, 771, 854, 972
MboI	GATC	4 cut(s)	424, 769, 852, 970
MflI	RGATCY	1 cut(s)	852
MhlI	GDGCHC	1 cut(s)	1293
MluCI	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1094, 1127, 1223
MlyI	GAGTC	5 cut(s)	107, 166, 341, 371, 386
MmeI	TCCRAC	3 cut(s)	127, 298, 351
MseI	TTAA	3 cut(s)	740, 813, 1176
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	1 cut(s)	439
MspR9I	CCNGG	3 cut(s)	33, 944, 1272
MvaI	CCWGG	3 cut(s)	33, 944, 1272
MwoI	GCNNNNNNNGC	1 cut(s)	267
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	4 cut(s)	424, 769, 852, 970
NlaIII	CATG	3 cut(s)	436, 878, 1318
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	569
PciSI	GCTCTTC	1 cut(s)	854
PfeI	GAWTC	4 cut(s)	197, 211, 338, 659
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	8, 733, 807, 982
PleI	GAGTC	5 cut(s)	107, 165, 340, 370, 385
PpsI	GAGTC	5 cut(s)	107, 165, 340, 370, 385
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	3 cut(s)	31, 942, 1270
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	3 cut(s)	31, 942, 1270
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	436, 1115
PsuI	RGATCY	1 cut(s)	852
RsaI	GTAC	2 cut(s)	183, 826
RsaNI	GTAC	2 cut(s)	182, 825
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	3 cut(s)	740, 813, 1176
SatI	GCNGC	4 cut(s)	7, 732, 806, 981
Sau3AI	GATC	4 cut(s)	424, 769, 852, 970
Sau96I	GGNCC	2 cut(s)	436, 1115
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	5 cut(s)	107, 166, 341, 371, 386
ScrFI	CCNGG	3 cut(s)	33, 944, 1272
SduI	GDGCHC	1 cut(s)	1293
SfaNI	GCATC	3 cut(s)	718, 1090, 1256
SinI	GGWCC	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1094, 1127, 1223
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	2 cut(s)	646, 760
SspMI	CTAG	1 cut(s)	984
StyD4I	CCNGG	3 cut(s)	31, 942, 1270
TaaI	ACNGT	2 cut(s)	42, 1122
TaiI	ACGT	1 cut(s)	1197
TaqI	TCGA	1 cut(s)	1047
TasI	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1094, 1127, 1223
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	197, 211, 338, 659
Tru1I	TTAA	3 cut(s)	740, 813, 1176
Tru9I	TTAA	3 cut(s)	740, 813, 1176
TscAI	CASTG	2 cut(s)	143, 1063
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	731, 805, 980
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	210, 318, 330, 846
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	143, 1063
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	4 cut(s)	53, 218, 536, 1127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1312
XspI	CTAG	1 cut(s)	984
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.