MD07G1257600.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
32383973 .. 32387515
3543 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1257600.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGGTATTCTGGGGAGTTGAAATAAAACCAGGCGGATCGTTTGGGTATCAGTCGGATGAATTCGAAGGAAAGCTTCACATTACTCAGGCGACTTTAGGCCTCGGTGAATCGAAGGAGAGGTGTATAGTTCAGTGTTCCATTGGAAGTTACATTTCAGCCTTTGTGTGTTCTTTGTTACCAAATAAGAATGAATCGGTCCCCTTGGATCTTGAATTTGAGCCGGTTGATGGTTTGGTGACCTTCTCGGTGATTGGAACCCGAAGCATCCACCTCTCTGGTTACCAAGTGGATGAGAGCGAAGATGAAGGAGATGACTATAGATCGGATTCTGTTCGGGAGAATAATGCCGAGACTGAGTCAGAGTCAGAGTCTTCAGAATACGATAATGATGATGATAATGTTGAGTTTATTGATGACGAAGATTTTGACATGTACCCGCCCTCGCCTGTTCCCAATAGTGGAGTTGTAATTGAGGAGATAGAGGACGATGACAAACCTACTAATGGAAACAGTCAGTCCAAACGACAAGTGAAAAAGAATCAATCGAATGACTCTGAAAAGAACACAAATTCTCAACATCAAATTGTTGTCAAGAAAAATGCCAGTGTCACTGTTTTGGAGAGTGAAGATGAAGATGGGTTTCCAATATCCACTAAACAGAAAACCAATATTGAGAAGCCTGAAGCAGCAACCGAACAGAAAGATAACAAAATTACTGAGAAAACCAAGAAGAAGAAAGTGAAAGATAGTGAGGCTGCTGGGTCAAAAAGGAAAGTCGAAGATGTTCACCAAGATGGTCAGCCAGAAGGGGAAAAGAAAAATAAGAAGAAGAAGAAATTGAAAGAGCAAGCTAAGGAGGTAAATGCTGATGACAATGAAAAGCAACCTGAGGTTTTGAAGAGCCAAGAGCATGAGCAAAAGCTATCTAATAAGGAGAGCTCTGACGTCGGAAAGAATTATATTCCTGGTGAAAATCTCACCGAGGGGAAAAAGAAGAAGAAAAAGAACAAGAAAACCCAGGAGAGTGAAATAAAACTGCACATGGATGAAACTGTTGGTAACATGGAAGATCAGAACGAACCTGCTTTGGAGCAAACCAGTGGCAAGCGATCTAAAGGGAAAACCTTTCCAAATGGATTGGTCGTCGAGGAGCTAGCTATGGGAAAACCTGATGGCAAAAAAGCTTCTTCAGGAAAAAAGGCAAGGCTTAGCCCTTCAGCATGTTTACATTTACCCTTTAAAGGATTCATGATGCTAATATTTGTTGTTTTTCAGGTCAGTGTTCGATACATTGGCAAGCTAAAGAATGGCAACATATTTGACTCCAATGTGGGAGGGCCACCTTTCAAGTTTCGCTTAGGTCTAGGACAAGTTATAGGAGGATGGGATGTTGGGGTTAACGGTATGCGTGTCGGGGACAAAAGAAGACTCACTATTCCACCAGAAATGGGTTATGGAAATAAACGTGCCGGTAAAATACCACCAAACTCATGGCTTTTGTTTGATGTTGAGCTGCTCGATGTGAATTGA

Protein Analysis

510

Amino Acids

56.59

Weight (kDa)

5.32

Isoelectric Point (pI)

49.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 3 - 96 1.1e-19 Nucleoplasmin-like domain
FKBP_C PF00254 425 - 506 2.3e-28 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 948
Acc36I ACCTGC 1 cut(s) 1090
AciI CCGC 2 cut(s) 33, 437
AclWI GGATC 2 cut(s) 43, 213
AcsI RAATTY 3 cut(s) 59, 212, 568
AcuI CTGAAG 4 cut(s) 357, 702, 1173, 1200
AcyI GRCGYC 1 cut(s) 945
AfaI GTAC 1 cut(s) 434
AfiI CCNNNNNNNGG 5 cut(s) 227, 458, 503, 1241, 1448
AflIII ACRYGT 1 cut(s) 429
AgsI TTSAA 5 cut(s) 20, 212, 841, 898, 1348
AjnI CCWGG 3 cut(s) 28, 964, 1017
AluBI AGCT 9 cut(s) 73, 851, 922, 939, 1153, 1157, 1184, 1300, 1513
AluI AGCT 9 cut(s) 73, 851, 922, 939, 1153, 1157, 1184, 1300, 1513
Alw21I GWGCWC 1 cut(s) 941
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 2 cut(s) 43, 213
AoxI GGCC 2 cut(s) 97, 1337
ApeKI GCWGC 3 cut(s) 686, 755, 1513
ApoI RAATTY 3 cut(s) 59, 212, 568
ArsI GACNNNNNNTTYG 2 cut(s) 407, 439
Asp700I GAANNNNTTC 1 cut(s) 783
AspS9I GGNCC 2 cut(s) 196, 1337
AsuHPI GGTGA 6 cut(s) 116, 247, 259, 779, 970, 980
AsuII TTCGAA 1 cut(s) 63
AsuNHI GCTAGC 1 cut(s) 1153
AvaII GGWCC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 888
BanII GRGCYC 1 cut(s) 941
BbsI GAAGAC 2 cut(s) 363, 1432
Bbv12I GWGCWC 1 cut(s) 941
BbvI GCAGC 3 cut(s) 698, 742, 1500
BccI CCATC 5 cut(s) 221, 629, 788, 1166, 1377
BciT130I CCWGG 3 cut(s) 30, 966, 1019
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 1154, 1364
BfmI CTRYAG 1 cut(s) 316
BfuAI ACCTGC 1 cut(s) 1090
BisI GCNGC 3 cut(s) 687, 756, 1514
BlpI GCTNAGC 1 cut(s) 1208
BlsI GCNGC 3 cut(s) 688, 757, 1515
Bme1390I CCNGG 3 cut(s) 30, 966, 1019
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 196, 1337
BmiI GGNNCC 2 cut(s) 198, 256
BmrFI CCNGG 3 cut(s) 30, 966, 1019
BmsI GCATC 2 cut(s) 273, 1242
BmtI GCTAGC 1 cut(s) 1157
BpiI GAAGAC 2 cut(s) 363, 1432
Bpu10I CCTNAGC 2 cut(s) 852, 1357
Bpu1102I GCTNAGC 1 cut(s) 1208
Bpu14I TTCGAA 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 945
BsaJI CCNNGG 4 cut(s) 100, 201, 981, 1017
Bsc4I CCNNNNNNNGG 5 cut(s) 227, 458, 503, 1241, 1448
Bse118I RCCGGY 2 cut(s) 220, 1469
Bse1I ACTGG 2 cut(s) 603, 1098
Bse21I CCTNAGG 1 cut(s) 888
BseBI CCWGG 3 cut(s) 30, 966, 1019
BseDI CCNNGG 4 cut(s) 100, 201, 981, 1017
BseGI GGATG 6 cut(s) 61, 264, 295, 1051, 1388, 1393
BseLI CCNNNNNNNGG 5 cut(s) 227, 458, 503, 1241, 1448
BseMII CTCAG 4 cut(s) 98, 345, 708, 879
BseNI ACTGG 2 cut(s) 603, 1098
BseRI GAGGAG 2 cut(s) 488, 1163
BseXI GCAGC 3 cut(s) 698, 742, 1500
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 1022
BshFI GGCC 2 cut(s) 99, 1339
BsiHKAI GWGCWC 1 cut(s) 941
BsiSI CCGG 2 cut(s) 221, 1470
BslFI GGGAC 2 cut(s) 182, 1430
BslI CCNNNNNNNGG 5 cut(s) 227, 458, 503, 1241, 1448
BsmAI GTCTC 1 cut(s) 344
BsmFI GGGAC 2 cut(s) 182, 1430
BsnI GGCC 2 cut(s) 99, 1339
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 941
Bsp143I GATC 5 cut(s) 35, 205, 320, 1069, 1109
Bsp1720I GCTNAGC 1 cut(s) 1208
BspACI CCGC 2 cut(s) 33, 437
BspANI GGCC 2 cut(s) 99, 1339
BspCNI CTCAG 4 cut(s) 97, 346, 709, 880
BspHI TCATGA 1 cut(s) 1248
BspLI GGNNCC 2 cut(s) 198, 256
BspMI ACCTGC 1 cut(s) 1090
BspOI GCTAGC 1 cut(s) 1157
BspPI GGATC 2 cut(s) 43, 213
BspQI GCTCTTC 1 cut(s) 893
BspT104I TTCGAA 1 cut(s) 63
BsrFI RCCGGY 2 cut(s) 220, 1469
BsrI ACTGG 2 cut(s) 603, 1098
BssAI RCCGGY 2 cut(s) 220, 1469
BssECI CCNNGG 4 cut(s) 100, 201, 981, 1017
BssMI GATC 5 cut(s) 35, 205, 320, 1069, 1109
BssNI GRCGYC 1 cut(s) 945
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 3 cut(s) 30, 966, 1019
Bst4CI ACNGT 4 cut(s) 512, 613, 1054, 1403
Bst6I CTCTTC 1 cut(s) 893
BstACI GRCGYC 1 cut(s) 945
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 849, 1106, 1155, 1298
BstDEI CTNAG 7 cut(s) 84, 354, 717, 852, 888, 1208, 1357
BstEII GGTNACC 2 cut(s) 235, 278
BstF5I GGATG 6 cut(s) 61, 264, 295, 1051, 1388, 1393
BstKTI GATC 5 cut(s) 38, 208, 323, 1072, 1112
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 5 cut(s) 35, 205, 320, 1069, 1109
BstNI CCWGG 3 cut(s) 30, 966, 1019
BstNSI RCATGY 2 cut(s) 433, 1224
BstPI GGTNACC 2 cut(s) 235, 278
BstSCI CCNGG 3 cut(s) 28, 964, 1017
BstSFI CTRYAG 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 698, 742, 1500
BstV2I GAAGAC 2 cut(s) 363, 1432
BstX2I RGATCY 1 cut(s) 205
BstXI CCANNNNNNTGG 2 cut(s) 275, 1491
BstYI RGATCY 1 cut(s) 205
Bsu36I CCTNAGG 1 cut(s) 888
BsuRI GGCC 2 cut(s) 99, 1339
BtsCI GGATG 6 cut(s) 61, 264, 295, 1051, 1388, 1393
BtsIMutI CAGTG 5 cut(s) 137, 609, 610, 1105, 1285
BveI ACCTGC 1 cut(s) 1090
Cac8I GCNNGC 4 cut(s) 849, 1106, 1155, 1298
CciI TCATGA 1 cut(s) 1248
Cfr10I RCCGGY 2 cut(s) 220, 1469
Cfr13I GGNCC 2 cut(s) 196, 1337
Csp6I GTAC 1 cut(s) 433
CviAII CATG 7 cut(s) 430, 911, 1042, 1063, 1221, 1249, 1491
CviQI GTAC 1 cut(s) 433
DdeI CTNAG 7 cut(s) 84, 354, 717, 852, 888, 1208, 1357
DpnI GATC 5 cut(s) 37, 207, 322, 1071, 1111
DpnII GATC 5 cut(s) 35, 205, 320, 1069, 1109
DraI TTTAAA 1 cut(s) 1240
Eam1104I CTCTTC 1 cut(s) 893
EarI CTCTTC 1 cut(s) 893
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 939
Eco130I CCWWGG 1 cut(s) 201
Eco147I AGGCCT 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 941
Eco47I GGWCC 1 cut(s) 196
Eco53kI GAGCTC 1 cut(s) 939
Eco57I CTGAAG 4 cut(s) 357, 702, 1173, 1200
Eco81I CCTNAGG 1 cut(s) 888
Eco91I GGTNACC 2 cut(s) 235, 278
EcoICRI GAGCTC 1 cut(s) 939
EcoO65I GGTNACC 2 cut(s) 235, 278
EcoRI GAATTC 1 cut(s) 59
EcoRII CCWGG 3 cut(s) 28, 964, 1017
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 941
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 7 cut(s) 433, 914, 1045, 1066, 1224, 1252, 1494
FalI AAGNNNNNCTT 4 cut(s) 57, 89, 1340, 1372
FaqI GGGAC 2 cut(s) 182, 1430
FatI CATG 7 cut(s) 429, 910, 1041, 1062, 1220, 1248, 1490
FauI CCCGC 1 cut(s) 444
Fnu4HI GCNGC 3 cut(s) 687, 756, 1514
FokI GGATG 6 cut(s) 68, 251, 302, 1058, 1395, 1400
FriOI GRGCYC 1 cut(s) 941
Fsp4HI GCNGC 3 cut(s) 687, 756, 1514
FspBI CTAG 2 cut(s) 1154, 1364
GluI GCNGC 3 cut(s) 687, 756, 1514
GsaI CCCAGC 1 cut(s) 762
HaeIII GGCC 2 cut(s) 99, 1339
HapII CCGG 2 cut(s) 221, 1470
Hin1I GRCGYC 1 cut(s) 945
Hin1II CATG 7 cut(s) 433, 914, 1045, 1066, 1224, 1252, 1494
HincII GTYRAC 1 cut(s) 1399
HindII GTYRAC 1 cut(s) 1399
HindIII AAGCTT 2 cut(s) 71, 1182
HpaI GTTAAC 1 cut(s) 1399
HpaII CCGG 2 cut(s) 221, 1470
HphI GGTGA 6 cut(s) 116, 247, 259, 779, 970, 980
Hpy166II GTNNAC 3 cut(s) 787, 1226, 1399
Hpy188I TCNGA 9 cut(s) 55, 325, 361, 367, 376, 556, 943, 950, 1074
Hpy188III TCNNGA 5 cut(s) 209, 335, 592, 1191, 1249
Hpy8I GTNNAC 3 cut(s) 787, 1226, 1399
Hpy99I CGWCG 2 cut(s) 950, 1148
HpyAV CCTTC 6 cut(s) 59, 106, 250, 299, 800, 1224
HpyCH4III ACNGT 4 cut(s) 512, 613, 1054, 1403
HpyCH4IV ACGT 2 cut(s) 945, 1465
HpyCH4V TGCA 1 cut(s) 1039
HpyF3I CTNAG 7 cut(s) 84, 354, 717, 852, 888, 1208, 1357
HpySE526I ACGT 2 cut(s) 945, 1465
Hsp92I GRCGYC 1 cut(s) 945
Hsp92II CATG 7 cut(s) 433, 914, 1045, 1066, 1224, 1252, 1494
KspAI GTTAAC 1 cut(s) 1399
Kzo9I GATC 5 cut(s) 35, 205, 320, 1069, 1109
LguI GCTCTTC 1 cut(s) 893
LmnI GCTCC 2 cut(s) 1090, 1150
Lsp1109I GCAGC 3 cut(s) 698, 742, 1500
LweI GCATC 2 cut(s) 273, 1242
MaeI CTAG 2 cut(s) 1154, 1364
MaeII ACGT 2 cut(s) 945, 1465
MaeIII GTNAC 6 cut(s) 146, 174, 235, 278, 607, 1058
MalI GATC 5 cut(s) 37, 207, 322, 1071, 1111
MboI GATC 5 cut(s) 35, 205, 320, 1069, 1109
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 941
MluCI AATT 9 cut(s) 59, 212, 468, 568, 582, 711, 836, 955, 1525
MlyI GAGTC 6 cut(s) 365, 371, 377, 545, 1316, 1422
MmeI TCCRAC 2 cut(s) 33, 928
MroXI GAANNNNTTC 1 cut(s) 783
MseI TTAA 2 cut(s) 1239, 1398
MslI CAYNNNNRTG 2 cut(s) 792, 1044
MspI CCGG 2 cut(s) 221, 1470
MspR9I CCNGG 3 cut(s) 30, 966, 1019
MvaI CCWGG 3 cut(s) 30, 966, 1019
NdeII GATC 5 cut(s) 35, 205, 320, 1069, 1109
NheI GCTAGC 1 cut(s) 1153
NlaIII CATG 7 cut(s) 433, 914, 1045, 1066, 1224, 1252, 1494
NlaIV GGNNCC 2 cut(s) 198, 256
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 2 cut(s) 235, 607
NspI RCATGY 2 cut(s) 433, 1224
NspV TTCGAA 1 cut(s) 63
PagI TCATGA 1 cut(s) 1248
PceI AGGCCT 1 cut(s) 99
PciI ACATGT 1 cut(s) 429
PciSI GCTCTTC 1 cut(s) 893
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 5 cut(s) 107, 191, 326, 538, 1245
PflFI GACNNNGTC 1 cut(s) 355
PkrI GCNGC 3 cut(s) 688, 757, 1515
PleI GAGTC 6 cut(s) 364, 370, 376, 545, 1316, 1422
PpsI GAGTC 6 cut(s) 364, 370, 376, 545, 1316, 1422
PscI ACATGT 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 941
Psp6I CCWGG 3 cut(s) 28, 964, 1017
PspEI GGTNACC 2 cut(s) 235, 278
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 3 cut(s) 28, 964, 1017
PspN4I GGNNCC 2 cut(s) 198, 256
PspPI GGNCC 2 cut(s) 196, 1337
PsuI RGATCY 1 cut(s) 205
PsyI GACNNNGTC 1 cut(s) 355
RsaI GTAC 1 cut(s) 434
RsaNI GTAC 1 cut(s) 433
RseI CAYNNNNRTG 2 cut(s) 792, 1044
SacI GAGCTC 1 cut(s) 941
SapI GCTCTTC 1 cut(s) 893
SaqAI TTAA 2 cut(s) 1239, 1398
SatI GCNGC 3 cut(s) 687, 756, 1514
Sau3AI GATC 5 cut(s) 35, 205, 320, 1069, 1109
Sau96I GGNCC 2 cut(s) 196, 1337
SchI GAGTC 6 cut(s) 365, 371, 377, 545, 1316, 1422
ScrFI CCNGG 3 cut(s) 30, 966, 1019
SduI GDGCHC 1 cut(s) 941
SfaNI GCATC 2 cut(s) 273, 1242
SfcI CTRYAG 1 cut(s) 316
SfuI TTCGAA 1 cut(s) 63
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 792, 1044
Sse9I AATT 9 cut(s) 59, 212, 468, 568, 582, 711, 836, 955, 1525
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 2 cut(s) 33, 437
SspI AATATT 2 cut(s) 670, 1260
SspMI CTAG 2 cut(s) 1154, 1364
SstI GAGCTC 1 cut(s) 941
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 28, 964, 1017
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 4 cut(s) 512, 613, 1054, 1403
TaiI ACGT 2 cut(s) 948, 1468
TaqI TCGA 7 cut(s) 63, 110, 545, 777, 1146, 1285, 1518
TaqII GACCGA 1 cut(s) 184
TasI AATT 9 cut(s) 59, 212, 468, 568, 582, 711, 836, 955, 1525
TfiI GAWTC 5 cut(s) 107, 191, 326, 538, 1245
Tru1I TTAA 2 cut(s) 1239, 1398
Tru9I TTAA 2 cut(s) 1239, 1398
TscAI CASTG 5 cut(s) 137, 610, 616, 1105, 1285
TseFI GTSAC 2 cut(s) 235, 607
TseI GCWGC 3 cut(s) 686, 755, 1513
Tsp45I GTSAC 2 cut(s) 235, 607
TspDTI ATGAA 7 cut(s) 72, 204, 318, 645, 891, 1062, 1237
TspRI CASTG 5 cut(s) 137, 610, 616, 1105, 1285
Tth111I GACNNNGTC 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 3 cut(s) 59, 212, 568
XceI RCATGY 2 cut(s) 433, 1224
XcmI CCANNNNNNNNNTGG 1 cut(s) 1488
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 2 cut(s) 1154, 1364
ZraI GACGTC 1 cut(s) 946
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.