Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

20908747 .. 20912606

Gene Structure 3860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28142.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGGGCGGCTTTTGGGGAATTGAAGTAAAACCAGGGAAACAGTACCCTATTGAGTTTCCAGAAGATGAGGATGCAAGGCTTAGAATTACTCAGGCGACTTTAGGCCTCGGGGACTCAAAAGGGAGGAGCATAGTTCAGTGTTCCGTTGGAGACAAAAGTCCTATCTTTTTGTGTTCTTTGATACCCAAGAAGAACGAATCGTGTGCCTTGAATCTTGAGTTTGAGGAGGATGAGGAGGTGGTGACATTTTCGGTGATTGGCAAGCAAAGCGTCCATCTCTCTGGCTTCTTTGAGACCTATGATGAAGGCGAAGGCGAACCTGTTGGAGAAGGATTTGAGTCAGATTCGTATGAGGAGGAAATTGGCGAGTCTGGGTCGGAGGAGTCATCAGATTATGGTAGTGATGACCAATATGAGTTGATGGATCGTGATCTTGACATTGACCGGCCTTCACATCCTACCATAAGTAGAGTTATAATTGAAGAGATAGTGGATGATGACGAGCCTACTGATGGAAAGGGTCAATCGAAACCTCTACTTGAGATCAATCAATCAAATGGATCTGAAGACAATACAAAAGGTGCTGGTGTTCCTGTTTTGGAAAGTGAAGATGAAGATGGCTTTCCGATATCCACCAAAAACAAAACGAAATCAGACACCGACGCTCAAAAAGATAAAGGAACTTCTAATAAGTCGAGGAAAGTAAAAGATGATGCTGCAGGATTGAAAAGGAAGGTTGAAAATACTGACCAAGATCATCAAGAAAGGCAAAAGAAAAGTAAGAAAAAGAAGCAACTTAATGATGGAAGTACTGGTGAAAAGGAAAAGCAACCTGAGGTCGTGAAGAGCAAAAATGAGCATGGACAACTGCTATCTAATGAGAAGAGCTCCGACATCAAAATGGTTTCTGTTCCTACTGAGAATCACGCAGAGGAGAAAAAGAAGAACAAGAAGAACAAGAAGAAATCCCAGGAGACTGAAGAAAAAACTAATGCCGATCAAACTGCTGCTGACGTGGGAAAAAGCAATGGCAAGTCATCTAAAGTGAGAACCTTTCCAAATGGATTGATTATTGAGGATGTAGCTATGGGTCGACCAGATGGCAAAAGAGCTGATCTGGGGAAGAAGGTCAGTGTTCGCTACATTGGCAAGCTAAAGAATGGGAAACAATTTGATGCAAATGTAAAAGGGCCACCATTCAAATTCACATTAGGTGTAGGACAAGTTATAGCAGGATGGGATGTTGGGGTTAAAGGCATGCGTGTTGGGGATAAAAGAAGACTTACTGTTCCACCATCAATGGGGTATGGACACAAAGGTGCTCCCCCTTCAATACCACCAAACTCATGGCTCGTGTTTGATGTCGAGTTGGTTGCTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

462

Amino Acids

50.6

Weight (kDa)

5.23

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	230 - 318	6.4e-33	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AccI	GTMKAC	1 cut(s)	1093
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	432, 568
AcsI	RAATTY	1 cut(s)	1202
AcuI	CTGAAG	2 cut(s)	585, 999
AfaI	GTAC	2 cut(s)	44, 811
AfiI	CCNNNNNNNGG	2 cut(s)	512, 1301
AgsI	TTSAA	7 cut(s)	23, 211, 482, 727, 740, 1201, 1332
AjiI	CACGTC	1 cut(s)	1015
AjnI	CCWGG	2 cut(s)	31, 969
AleI	CACNNNNGTG	1 cut(s)	1317
AluBI	AGCT	4 cut(s)	888, 1085, 1112, 1153
AluI	AGCT	4 cut(s)	888, 1085, 1112, 1153
Alw21I	GWGCWC	2 cut(s)	890, 1324
Alw26I	GTCTC	3 cut(s)	144, 287, 968
AlwI	GGATC	2 cut(s)	432, 568
Ama87I	CYCGRG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	103, 446, 1190
ApeKI	GCWGC	2 cut(s)	716, 1007
ApoI	RAATTY	1 cut(s)	1202
AspS9I	GGNCC	1 cut(s)	1190
AsuHPI	GGTGA	3 cut(s)	253, 265, 827
AvaI	CYCGRG	1 cut(s)	107
AxyI	CCTNAGG	1 cut(s)	834
BanII	GRGCYC	1 cut(s)	890
BauI	CACGAG	1 cut(s)	1352
BbsI	GAAGAC	2 cut(s)	573, 1285
Bbv12I	GWGCWC	2 cut(s)	890, 1324
BbvI	GCAGC	2 cut(s)	703, 994
BccI	CCATC	8 cut(s)	282, 415, 506, 611, 797, 1094, 1230, 1303
BcgI	CGANNNNNNTGC	5 cut(s)	185, 219, 986, 1020, 1355
BciT130I	CCWGG	2 cut(s)	33, 971
BcoDI	GTCTC	3 cut(s)	144, 287, 968
BfmI	CTRYAG	1 cut(s)	717
BisI	GCNGC	3 cut(s)	7, 717, 1008
BlsI	GCNGC	3 cut(s)	8, 718, 1009
BmcAI	AGTACT	1 cut(s)	811
Bme1390I	CCNGG	2 cut(s)	33, 971
BmeT110I	CYCGRG	1 cut(s)	107
BmgBI	CACGTC	1 cut(s)	1015
BmgT120I	GGNCC	1 cut(s)	1190
BmrFI	CCNGG	2 cut(s)	33, 971
BmsI	GCATC	3 cut(s)	61, 703, 1165
BoxI	GACNNNNGTC	1 cut(s)	156
BpiI	GAAGAC	2 cut(s)	573, 1285
BplI	GAGNNNNNCTC	2 cut(s)	872, 904
BpuEI	CTTGAG	2 cut(s)	236, 560
BsaBI	GATNNNNATC	1 cut(s)	429
BsaI	GGTCTC	1 cut(s)	287
BsaJI	CCNNGG	3 cut(s)	32, 106, 969
Bsc4I	CCNNNNNNNGG	2 cut(s)	512, 1301
Bse118I	RCCGGY	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	817
Bse21I	CCTNAGG	1 cut(s)	834
Bse3DI	GCAATG	1 cut(s)	1033
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	33, 971
BseDI	CCNNGG	3 cut(s)	32, 106, 969
BseGI	GGATG	7 cut(s)	76, 235, 454, 499, 1084, 1241, 1246
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	512, 1301
BseMI	GCAATG	1 cut(s)	1033
BseMII	CTCAG	3 cut(s)	104, 825, 909
BseNI	ACTGG	1 cut(s)	817
BseRI	GAGGAG	6 cut(s)	139, 239, 248, 368, 395, 947
BseXI	GCAGC	2 cut(s)	703, 994
BshFI	GGCC	3 cut(s)	105, 448, 1192
BsiHKAI	GWGCWC	2 cut(s)	890, 1324
BsiHKCI	CYCGRG	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	445
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	512, 1301
BsmAI	GTCTC	3 cut(s)	144, 287, 968
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	105, 448, 1192
Bso31I	GGTCTC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	890, 1324
Bsp143I	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	3 cut(s)	105, 448, 1192
BspCNI	CTCAG	3 cut(s)	103, 826, 910
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	2 cut(s)	432, 568
BspQI	GCTCTTC	2 cut(s)	839, 878
BspTNI	GGTCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	1033
BsrFI	RCCGGY	1 cut(s)	444
BsrI	ACTGG	1 cut(s)	817
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	3 cut(s)	32, 106, 969
BssMI	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
BssSI	CACGAG	1 cut(s)	1352
Bst2BI	CACGAG	1 cut(s)	1352
Bst2UI	CCWGG	2 cut(s)	33, 971
Bst4CI	ACNGT	2 cut(s)	42, 1288
Bst6I	CTCTTC	3 cut(s)	477, 839, 878
BstC8I	GCNNGC	3 cut(s)	263, 1151, 1259
BstDEI	CTNAG	4 cut(s)	80, 90, 834, 918
BstF5I	GGATG	7 cut(s)	76, 235, 454, 499, 1084, 1241, 1246
BstKTI	GATC	7 cut(s)	427, 433, 546, 563, 757, 1000, 1117
BstMAI	GTCTC	3 cut(s)	144, 287, 968
BstMBI	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 1146
BstNI	CCWGG	2 cut(s)	33, 971
BstNSI	RCATGY	1 cut(s)	1261
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	2 cut(s)	31, 969
BstSFI	CTRYAG	1 cut(s)	717
BstV1I	GCAGC	2 cut(s)	703, 994
BstV2I	GAAGAC	2 cut(s)	573, 1285
BstX2I	RGATCY	1 cut(s)	560
BstXI	CCANNNNNNTGG	2 cut(s)	281, 1347
BstYI	RGATCY	1 cut(s)	560
Bsu36I	CCTNAGG	1 cut(s)	834
BsuRI	GGCC	3 cut(s)	105, 448, 1192
BtrI	CACGTC	1 cut(s)	1015
BtsCI	GGATG	7 cut(s)	76, 235, 454, 499, 1084, 1241, 1246
BtsIMutI	CAGTG	2 cut(s)	143, 1138
Cac8I	GCNNGC	3 cut(s)	263, 1151, 1259
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	1 cut(s)	1190
CseI	GACGC	2 cut(s)	259, 671
Csp6I	GTAC	2 cut(s)	43, 810
CviAII	CATG	3 cut(s)	860, 1258, 1347
CviQI	GTAC	2 cut(s)	43, 810
DdeI	CTNAG	4 cut(s)	80, 90, 834, 918
DpnI	GATC	7 cut(s)	426, 432, 545, 562, 756, 999, 1116
DpnII	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
Eam1104I	CTCTTC	3 cut(s)	477, 839, 878
EarI	CTCTTC	3 cut(s)	477, 839, 878
Ecl136II	GAGCTC	1 cut(s)	888
Eco147I	AGGCCT	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	890
Eco31I	GGTCTC	1 cut(s)	287
Eco32I	GATATC	1 cut(s)	630
Eco53kI	GAGCTC	1 cut(s)	888
Eco57I	CTGAAG	2 cut(s)	585, 999
Eco81I	CCTNAGG	1 cut(s)	834
Eco88I	CYCGRG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	888
EcoRII	CCWGG	2 cut(s)	31, 969
EcoRV	GATATC	1 cut(s)	630
EcoT38I	GRGCYC	1 cut(s)	890
FaeI	CATG	3 cut(s)	863, 1261, 1350
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	3 cut(s)	859, 1257, 1346
FblI	GTMKAC	1 cut(s)	1093
Fnu4HI	GCNGC	3 cut(s)	7, 717, 1008
FokI	GGATG	7 cut(s)	83, 242, 441, 506, 1091, 1248, 1253
FriOI	GRGCYC	1 cut(s)	890
Fsp4HI	GCNGC	3 cut(s)	7, 717, 1008
GluI	GCNGC	3 cut(s)	7, 717, 1008
HaeIII	GGCC	3 cut(s)	105, 448, 1192
HapII	CCGG	1 cut(s)	445
HgaI	GACGC	2 cut(s)	259, 671
Hin1II	CATG	3 cut(s)	863, 1261, 1350
HincII	GTYRAC	1 cut(s)	1094
HindII	GTYRAC	1 cut(s)	1094
HinfI	GANTC	8 cut(s)	113, 197, 211, 338, 344, 368, 383, 922
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	3 cut(s)	253, 265, 827
Hpy166II	GTNNAC	1 cut(s)	1094
Hpy188I	TCNGA	7 cut(s)	343, 379, 391, 565, 627, 655, 892
Hpy188III	TCNNGA	6 cut(s)	59, 215, 428, 434, 761, 841
Hpy8I	GTNNAC	1 cut(s)	1094
Hpy99I	CGWCG	1 cut(s)	665
HpyAV	CCTTC	7 cut(s)	299, 305, 323, 459, 727, 1120, 1338
HpyCH4III	ACNGT	2 cut(s)	42, 1288
HpyCH4IV	ACGT	1 cut(s)	1014
HpyCH4V	TGCA	3 cut(s)	74, 719, 1178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 1146
HpyF3I	CTNAG	4 cut(s)	80, 90, 834, 918
HpySE526I	ACGT	1 cut(s)	1014
Hsp92II	CATG	3 cut(s)	863, 1261, 1350
Kzo9I	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
LguI	GCTCTTC	2 cut(s)	839, 878
LmnI	GCTCC	3 cut(s)	126, 893, 1327
Lsp1109I	GCAGC	2 cut(s)	703, 994
LweI	GCATC	3 cut(s)	61, 703, 1165
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	7 cut(s)	426, 432, 545, 562, 756, 999, 1116
MboI	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	2 cut(s)	890, 1324
MluCI	AATT	7 cut(s)	18, 84, 360, 477, 1169, 1202, 1381
MlyI	GAGTC	4 cut(s)	107, 347, 377, 392
MmeI	TCCRAC	4 cut(s)	127, 304, 357, 915
MseI	TTAA	3 cut(s)	798, 1251, 1380
MslI	CAYNNNNRTG	2 cut(s)	899, 1317
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	2 cut(s)	33, 971
MvaI	CCWGG	2 cut(s)	33, 971
MwoI	GCNNNNNNNGC	2 cut(s)	267, 1146
NdeII	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
NlaIII	CATG	3 cut(s)	863, 1261, 1350
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	1261
OliI	CACNNNNGTG	1 cut(s)	1317
PaeI	GCATGC	1 cut(s)	1261
PceI	AGGCCT	1 cut(s)	105
PciSI	GCTCTTC	2 cut(s)	839, 878
PfeI	GAWTC	4 cut(s)	197, 211, 344, 922
PkrI	GCNGC	3 cut(s)	8, 718, 1009
PleI	GAGTC	4 cut(s)	107, 346, 376, 391
PpsI	GAGTC	4 cut(s)	107, 346, 376, 391
PshAI	GACNNNNGTC	1 cut(s)	156
PsiI	TTATAA	1 cut(s)	476
Psp124BI	GAGCTC	1 cut(s)	890
Psp6I	CCWGG	2 cut(s)	31, 969
PspGI	CCWGG	2 cut(s)	31, 969
PspPI	GGNCC	1 cut(s)	1190
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	2 cut(s)	44, 811
RsaNI	GTAC	2 cut(s)	43, 810
RseI	CAYNNNNRTG	2 cut(s)	899, 1317
SacI	GAGCTC	1 cut(s)	890
SalI	GTCGAC	1 cut(s)	1092
SapI	GCTCTTC	2 cut(s)	839, 878
SaqAI	TTAA	3 cut(s)	798, 1251, 1380
SatI	GCNGC	3 cut(s)	7, 717, 1008
Sau3AI	GATC	7 cut(s)	424, 430, 543, 560, 754, 997, 1114
Sau96I	GGNCC	1 cut(s)	1190
ScaI	AGTACT	1 cut(s)	811
SchI	GAGTC	4 cut(s)	107, 347, 377, 392
ScrFI	CCNGG	2 cut(s)	33, 971
SduI	GDGCHC	2 cut(s)	890, 1324
SfaNI	GCATC	3 cut(s)	61, 703, 1165
SfcI	CTRYAG	1 cut(s)	717
SmiMI	CAYNNNNRTG	2 cut(s)	899, 1317
SmlI	CTYRAG	2 cut(s)	215, 539
SmoI	CTYRAG	2 cut(s)	215, 539
SphI	GCATGC	1 cut(s)	1261
Sse9I	AATT	7 cut(s)	18, 84, 360, 477, 1169, 1202, 1381
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	6
SstI	GAGCTC	1 cut(s)	890
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	31, 969
TaaI	ACNGT	2 cut(s)	42, 1288
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	4 cut(s)	527, 695, 1093, 1365
TasI	AATT	7 cut(s)	18, 84, 360, 477, 1169, 1202, 1381
TatI	WGTACW	1 cut(s)	809
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	197, 211, 344, 922
Tru1I	TTAA	3 cut(s)	798, 1251, 1380
Tru9I	TTAA	3 cut(s)	798, 1251, 1380
TscAI	CASTG	2 cut(s)	143, 1138
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	716, 1007
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	318, 627
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	143, 1138
XapI	RAATTY	1 cut(s)	1202
XceI	RCATGY	1 cut(s)	1261
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1344
XmiI	GTMKAC	1 cut(s)	1093
ZrmI	AGTACT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.