Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

61386046 .. 61389964

Gene Structure 3919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG396500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGGCGGCTTTTGGGGAATTGAAGTAAAACCAGGGAAACAGTATCCTATTGAATTTCCAGAAGATGAGGAAGCAAGGCTTAGGATTACTCAGGCGACTTTAGGTCTTGGCGACTCAAAGGGGAGGAGCATAGTTCAGTGTTCCGTTGGAGATAAGAGTCCTATCTTTTTGTGTTCTTTGGTACCTAAGAAGAACGAATCGTGTCCCTTGAATCTTGAATTTGAGGAGGATGAGGAGTTGGTGACCTTTTCGGTCATTGGCAAACAAAGTGTCCATCTCTCTGGCTACTTTGAGACTTATGATGAAGGCGAAGCTGTTGGAGAAGGATATGAGTCAGATTCGTATGAGGAGGATATTGGTGAGTCTGGGTCGGAGGAGTCATCAGATATTGGTAGTGATGACCAATATGAGCTAATTGATAGTGATCTTGACATGGACCGGTCTTCACCTCCTACCAAAAATGGAGTTATAATTGAGGAGATTGAGGACGATGACAAGCCCACTAATGGAAAGGGCCAATCTAAACCTCTACTTGAATTCAATCAATCAAATGGCTCTGAGGACAATACAAAAGGTGCAGGTGTCCCTGTTTTGGAAAGTGAAGATGACGATGGCTTTCCAATATCCACGAAAAACAAAACCAATATTGAGAAGCCTGAATCAGCAACAGGACACAGAGATAAAGTAACTGAGAAAACCAAGAAGAGGAAAGCAAAAGATGGTGATGATGCTGCTGGATTAAAAAGGAAGGTTGAAAATATTGACCAAGATCATCAAGAAGGGCAAAAGAAGAGTAAGAAAAAGCAGCAACTTAAGGATGGAAGTACTGATGAAAAGGAAAAGCAACCTGAGGTCTTGAAGAGCAAAAATGAGCATGGACAACTGCTATCTAATAAGAAGAGCCCTGACATCAAAATGGACTCTGTTCCTACTGATAATCAGACAGAGGAGAAAAAAAAGAAGAAGAACAAGAAGAAATCCCAGGAGACTGAAGAAAAAACTAATGCTGATCAAACTGCTGCTAATATGGAAAAAACCAATGGCAAGTCATCATCTAAAGTGAGAACCTTTCCAAATGGATTGGTTATCGAGGAGGTTTCTATGGGTCGACCAGATGGCAAAAGAGCTGATCCGGGAAAGAAGGTCAGTGTTCGCTATATTGGGAAGCTAAAGAATGGGAAACAATTTGACGCAAATGTTAGAGGGCCACCGTTCAAATTCACATTAGGTGTAGGACAAGTTATATCAGGATGGGATGTTGGGGTTAAAGGTAAGTTTCTAAACGTGAAAACTTCACTTATATCTGATTTGCAATTTTACAAAGTATTAGTTGTTGCATCTTCTAAAACATATCTACCTCCAGGTATGCGCGTTGGGGACAAAAGAAGACTCACCGTTCCACCATCAATGGGGTATGACGGTTATCATTGTTTCTTTTCCATGGAGCATGTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

485

Amino Acids

53.62

Weight (kDa)

5.41

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	4 - 97	8.7e-27	Nucleoplasmin-like domain
FKBP_C	PF00254	374 - 473	1.1e-16	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	1108
AccII	CGCG	1 cut(s)	1371
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	1124
AcsI	RAATTY	4 cut(s)	53, 218, 536, 1217
AcuI	CTGAAG	1 cut(s)	1011
AfaI	GTAC	3 cut(s)	183, 826, 1452
AfiI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1409
AflII	CTTAAG	1 cut(s)	812
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	9 cut(s)	23, 53, 211, 218, 536, 541, 755, 859, 1216
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	31, 981, 1360
AluBI	AGCT	4 cut(s)	314, 412, 1127, 1168
AluI	AGCT	4 cut(s)	314, 412, 1127, 1168
Alw26I	GTCTC	2 cut(s)	287, 980
AlwI	GGATC	1 cut(s)	1124
AoxI	GGCC	2 cut(s)	514, 1205
ApeKI	GCWGC	3 cut(s)	731, 805, 1019
ApoI	RAATTY	4 cut(s)	53, 218, 536, 1217
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsiGI	ACCGGT	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	1371
AspS9I	GGNCC	3 cut(s)	436, 514, 1205
AsuC2I	CCSGG	1 cut(s)	1134
AsuHPI	GGTGA	5 cut(s)	253, 371, 438, 734, 1384
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	905
BbsI	GAAGAC	2 cut(s)	435, 1393
BbvI	GCAGC	3 cut(s)	718, 817, 1006
BccI	CCATC	7 cut(s)	282, 605, 713, 812, 1109, 1245, 1411
BciT130I	CCWGG	3 cut(s)	33, 983, 1362
BciVI	GTATCC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	1009
BcnI	CCSGG	1 cut(s)	1134
BcoDI	GTCTC	2 cut(s)	287, 980
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	4 cut(s)	7, 732, 806, 1020
BlsI	GCNGC	4 cut(s)	8, 733, 807, 1021
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	4 cut(s)	33, 983, 1134, 1362
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	3 cut(s)	436, 514, 1205
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	33, 983, 1134, 1362
BmsI	GCATC	2 cut(s)	718, 1346
BpiI	GAAGAC	2 cut(s)	435, 1393
BpmI	CTGGAG	1 cut(s)	1344
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	1134
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	32, 981, 1440
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1409
Bse118I	RCCGGY	1 cut(s)	438
Bse21I	CCTNAGG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	3 cut(s)	33, 983, 1362
BseDI	CCNNGG	3 cut(s)	32, 981, 1440
BseGI	GGATG	4 cut(s)	235, 823, 1256, 1261
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1409
BseMII	CTCAG	4 cut(s)	104, 549, 681, 840
BseRI	GAGGAG	8 cut(s)	139, 239, 248, 362, 389, 491, 962, 1106
BseXI	GCAGC	3 cut(s)	718, 817, 1006
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	1371
BshFI	GGCC	2 cut(s)	516, 1207
BshNI	GGYRCC	1 cut(s)	181
BshTI	ACCGGT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	439, 1133
BslFI	GGGAC	3 cut(s)	189, 569, 1391
BslI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1409
BsmAI	GTCTC	2 cut(s)	287, 980
BsmFI	GGGAC	3 cut(s)	189, 569, 1391
BsnI	GGCC	2 cut(s)	516, 1207
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	4 cut(s)	424, 769, 1009, 1129
Bsp19I	CCATGG	1 cut(s)	1440
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	2 cut(s)	516, 1207
BspCNI	CTCAG	4 cut(s)	103, 550, 682, 841
BspFNI	CGCG	1 cut(s)	1371
BspLI	GGNNCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	1124
BspQI	GCTCTTC	2 cut(s)	854, 893
BspT107I	GGYRCC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	3 cut(s)	32, 981, 1440
BssMI	GATC	4 cut(s)	424, 769, 1009, 1129
BssT1I	CCWWGG	1 cut(s)	1440
Bst2UI	CCWGG	3 cut(s)	33, 983, 1362
Bst4CI	ACNGT	4 cut(s)	42, 1212, 1396, 1421
Bst6I	CTCTTC	4 cut(s)	698, 785, 854, 893
BstAFI	CTTAAG	1 cut(s)	812
BstDEI	CTNAG	6 cut(s)	80, 90, 186, 558, 690, 849
BstDSI	CCRYGG	1 cut(s)	1440
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	4 cut(s)	235, 823, 1256, 1261
BstFNI	CGCG	1 cut(s)	1371
BstHHI	GCGC	1 cut(s)	1371
BstKTI	GATC	4 cut(s)	427, 772, 1012, 1132
BstMAI	GTCTC	2 cut(s)	287, 980
BstMBI	GATC	4 cut(s)	424, 769, 1009, 1129
BstNI	CCWGG	3 cut(s)	33, 983, 1362
BstNSI	RCATGY	1 cut(s)	1451
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	4 cut(s)	31, 981, 1132, 1360
BstUI	CGCG	1 cut(s)	1371
BstV1I	GCAGC	3 cut(s)	718, 817, 1006
BstV2I	GAAGAC	2 cut(s)	435, 1393
BstXI	CCANNNNNNTGG	1 cut(s)	281
Bsu36I	CCTNAGG	1 cut(s)	849
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	2 cut(s)	516, 1207
BtgI	CCRYGG	1 cut(s)	1440
BtsCI	GGATG	4 cut(s)	235, 823, 1256, 1261
BtsIMutI	CAGTG	2 cut(s)	143, 1153
BveI	ACCTGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	1371
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	3 cut(s)	436, 514, 1205
CseI	GACGC	1 cut(s)	1199
Csp6I	GTAC	3 cut(s)	182, 825, 1451
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	4 cut(s)	433, 875, 1441, 1448
CviQI	GTAC	3 cut(s)	182, 825, 1451
DdeI	CTNAG	6 cut(s)	80, 90, 186, 558, 690, 849
DpnI	GATC	4 cut(s)	426, 771, 1011, 1131
DpnII	GATC	4 cut(s)	424, 769, 1009, 1129
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	4 cut(s)	698, 785, 854, 893
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	4 cut(s)	698, 785, 854, 893
Eco130I	CCWWGG	1 cut(s)	1440
Eco24I	GRGCYC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	1011
Eco81I	CCTNAGG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	3 cut(s)	31, 981, 1360
EcoT14I	CCWWGG	1 cut(s)	1440
EcoT38I	GRGCYC	1 cut(s)	905
ErhI	CCWWGG	1 cut(s)	1440
FaeI	CATG	4 cut(s)	436, 878, 1444, 1451
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	3 cut(s)	189, 569, 1391
FatI	CATG	4 cut(s)	432, 874, 1440, 1447
FbaI	TGATCA	1 cut(s)	1009
FblI	GTMKAC	1 cut(s)	1108
Fnu4HI	GCNGC	4 cut(s)	7, 732, 806, 1020
FokI	GGATG	4 cut(s)	242, 830, 1263, 1268
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	4 cut(s)	7, 732, 806, 1020
GlaI	GCGC	1 cut(s)	1370
GluI	GCNGC	4 cut(s)	7, 732, 806, 1020
GsuI	CTGGAG	1 cut(s)	1344
HaeIII	GGCC	2 cut(s)	516, 1207
HapII	CCGG	2 cut(s)	439, 1133
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	1 cut(s)	1371
Hin1II	CATG	4 cut(s)	436, 878, 1444, 1451
Hin6I	GCGC	1 cut(s)	1369
HinP1I	GCGC	1 cut(s)	1369
HincII	GTYRAC	1 cut(s)	1109
HindII	GTYRAC	1 cut(s)	1109
HpaII	CCGG	2 cut(s)	439, 1133
HphI	GGTGA	5 cut(s)	253, 371, 438, 734, 1384
Hpy166II	GTNNAC	1 cut(s)	1109
Hpy188I	TCNGA	6 cut(s)	337, 373, 385, 559, 942, 1306
Hpy188III	TCNNGA	6 cut(s)	59, 215, 428, 776, 856, 1248
Hpy8I	GTNNAC	1 cut(s)	1109
HpyAV	CCTTC	5 cut(s)	299, 317, 742, 773, 1135
HpyCH4III	ACNGT	4 cut(s)	42, 1212, 1396, 1421
HpyCH4IV	ACGT	1 cut(s)	1284
HpyCH4V	TGCA	3 cut(s)	578, 1312, 1337
HpyF3I	CTNAG	6 cut(s)	80, 90, 186, 558, 690, 849
HpySE526I	ACGT	1 cut(s)	1284
Hsp92II	CATG	4 cut(s)	436, 878, 1444, 1451
HspAI	GCGC	1 cut(s)	1369
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	1009
Kzo9I	GATC	4 cut(s)	424, 769, 1009, 1129
LguI	GCTCTTC	2 cut(s)	854, 893
LmnI	GCTCC	2 cut(s)	126, 1444
Lsp1109I	GCAGC	3 cut(s)	718, 817, 1006
LweI	GCATC	2 cut(s)	718, 1346
MaeII	ACGT	1 cut(s)	1284
MaeIII	GTNAC	2 cut(s)	241, 685
MalI	GATC	4 cut(s)	426, 771, 1011, 1131
MboI	GATC	4 cut(s)	424, 769, 1009, 1129
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1184, 1217, 1313
MlyI	GAGTC	7 cut(s)	107, 166, 341, 371, 386, 914, 1383
MmeI	TCCRAC	3 cut(s)	127, 298, 351
MseI	TTAA	3 cut(s)	740, 813, 1266
MslI	CAYNNNNRTG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	439, 1133
MspR9I	CCNGG	4 cut(s)	33, 983, 1134, 1362
MvaI	CCWGG	3 cut(s)	33, 983, 1362
MvnI	CGCG	1 cut(s)	1371
NciI	CCSGG	1 cut(s)	1134
NcoI	CCATGG	1 cut(s)	1440
NdeII	GATC	4 cut(s)	424, 769, 1009, 1129
NlaIII	CATG	4 cut(s)	436, 878, 1444, 1451
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	241
NspI	RCATGY	1 cut(s)	1451
PaqCI	CACCTGC	1 cut(s)	569
PciSI	GCTCTTC	2 cut(s)	854, 893
PfeI	GAWTC	4 cut(s)	197, 211, 338, 659
PfoI	TCCNGGA	1 cut(s)	1132
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	8, 733, 807, 1021
PleI	GAGTC	7 cut(s)	107, 165, 340, 370, 385, 914, 1383
PpsI	GAGTC	7 cut(s)	107, 165, 340, 370, 385, 914, 1383
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	3 cut(s)	31, 981, 1360
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	3 cut(s)	31, 981, 1360
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	3 cut(s)	436, 514, 1205
RsaI	GTAC	3 cut(s)	183, 826, 1452
RsaNI	GTAC	3 cut(s)	182, 825, 1451
RseI	CAYNNNNRTG	1 cut(s)	914
SalI	GTCGAC	1 cut(s)	1107
SapI	GCTCTTC	2 cut(s)	854, 893
SaqAI	TTAA	3 cut(s)	740, 813, 1266
SatI	GCNGC	4 cut(s)	7, 732, 806, 1020
Sau3AI	GATC	4 cut(s)	424, 769, 1009, 1129
Sau96I	GGNCC	3 cut(s)	436, 514, 1205
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	7 cut(s)	107, 166, 341, 371, 386, 914, 1383
ScrFI	CCNGG	4 cut(s)	33, 983, 1134, 1362
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	718, 1346
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1184, 1217, 1313
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	2 cut(s)	646, 760
StyD4I	CCNGG	4 cut(s)	31, 981, 1132, 1360
StyI	CCWWGG	1 cut(s)	1440
TaaI	ACNGT	4 cut(s)	42, 1212, 1396, 1421
TaiI	ACGT	1 cut(s)	1287
TaqI	TCGA	2 cut(s)	1089, 1108
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1184, 1217, 1313
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	197, 211, 338, 659
Tru1I	TTAA	3 cut(s)	740, 813, 1266
Tru9I	TTAA	3 cut(s)	740, 813, 1266
TscAI	CASTG	2 cut(s)	143, 1153
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	731, 805, 1019
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	318, 846
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	143, 1153
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	4 cut(s)	53, 218, 536, 1217
XceI	RCATGY	1 cut(s)	1451
XmiI	GTMKAC	1 cut(s)	1108
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.