Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

63203453 .. 63207356

Gene Structure 3904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGGGCGGCTTTTGGGGAATTGAAGTAAAACCAGGGAAACAGTATCCTATTGAATTTCCAGAAGATGAGGAAGCAAGGCTTAGGATTACTCAGGCGACTTTAGGTCTCGGCGACTCAAAGGGGAGGAGCATAGTTCAGTGTTCCGTTGGAGATAAGAGTCCTATCTTTTTGTGTTCTTTGGTACCTAAGAAGAATGAATCGTGTCCCTTGAATCTTGAATTTGAGGAGGATGGTGAGTTGGTGACCTTTTCGGTCATTGGCAAACAAAGCGTCCATCTCTCTGGCTACTTTGAGACTTATGATGAAGGCGAAGCTGTTGGAGAAGGATATGAGTCAGATTCGTCTGAGGAGGATATTGGTGAGTCTGGGTCACAGGAGTCATCAGATTATGGTAGTGATGACCAATATGAGCTAATTGATAGTGATCTTGACATGGACCGGTCTTCACCTCCTACCAAAAGTGGAGTTATAATTGAGGAGATTGAGGACGATGACAAGCCCACTAATGGAAAGGGTCAATCTAAACCTCTACTTGAATTCAATCAGTCAAATGGCTCTGAGGACAATACAAAAGGTGCAGGTGTCCCTGTTTTGGAAAGTGAAGATGACGATGGCTTTCCAATATCCACGAAAAACAAAACCAATATTGAGAAGCCTGAATCAGCAACAGGACACAGAGATAAAGTAACTGAGAAAACCAAGAAGAGGAAAGCAAAAGATGGTGATGATGCTGCTGGATTAAAAAGGAAGGTTGAAAATATTGACCAAGATCATCAAGAAGGGCAAAAGAAGAGTAAGAAAAAGCAGCAACTTAAGGATGGAAGTACTGATGAAAAGGAAAAGCAACCTGAGGTCTTGAAGAGCAAAAATGAGTATGGACAACTGCTATCGAATAAGAAAGTTGCTTTTTGCTCTTCCGTTGAACAAAATAATTATGCTTGTATACACGACAGGAGCCCTGACATCAAAATGGACTCTGTTCCTACTGAGAATCAGACAGGAGAGAAAAAGAAGAAGAAGAAGAACAAGAAGAAATCCCAGGAGACTGAAGAAAAAACTAATGCTGATCAAACTGCTGCTAATATGGAAAAAAGCAATGGCAAGTCATCATCTAAAGTGAGAACCTTTCCAAATGGATTGGTTATCGAGGAGGTTTCTATGGGTCGACCAGATGGCAAAAGAGCTGATCCGGGAAAGAAGGTCAGTGTTCGCTACATTGGGAAGCTAAAGAATGGGAAACAATTTGACGCAAATGTTATAGGGCCACCGTTCAAATTCACATTAGGTGTAGGACAAGTTATATCAGGATGGGATGTTGGGGTTAAAGGTATGCGCGTTGGGGACAAAAGAAGACTCACCGTTCCACCATCAATGGGGTATGGACAGAGAGGTGCTCCCCCTGCGATACCACCAAACTCATGGCTGGTGTTTGATGTCGAGTTGGTTGCTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

485

Amino Acids

53.21

Weight (kDa)

5.3

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	4 - 97	2.5e-26	Nucleoplasmin-like domain
FKBP_C	PF00254	393 - 482	3.1e-32	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	2 cut(s)	943, 1165
AccII	CGCG	1 cut(s)	1335
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	1181
AcsI	RAATTY	4 cut(s)	53, 218, 536, 1274
AcuI	CTGAAG	1 cut(s)	1068
AfaI	GTAC	2 cut(s)	183, 826
AfiI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1373
AflII	CTTAAG	1 cut(s)	812
AgeI	ACCGGT	1 cut(s)	438
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	31, 1038
AluBI	AGCT	4 cut(s)	314, 412, 1184, 1225
AluI	AGCT	4 cut(s)	314, 412, 1184, 1225
Alw21I	GWGCWC	1 cut(s)	1396
Alw26I	GTCTC	3 cut(s)	110, 287, 1037
AlwI	GGATC	1 cut(s)	1181
AoxI	GGCC	1 cut(s)	1262
ApeKI	GCWGC	3 cut(s)	731, 805, 1076
ApoI	RAATTY	4 cut(s)	53, 218, 536, 1274
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsiGI	ACCGGT	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	1335
AspS9I	GGNCC	2 cut(s)	436, 1262
AsuC2I	CCSGG	1 cut(s)	1191
AsuHPI	GGTGA	6 cut(s)	245, 253, 371, 438, 734, 1348
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	959
BbsI	GAAGAC	2 cut(s)	435, 1357
Bbv12I	GWGCWC	1 cut(s)	1396
BbvI	GCAGC	3 cut(s)	718, 817, 1063
BccI	CCATC	8 cut(s)	224, 282, 605, 713, 812, 1166, 1302, 1375
BcgI	CGANNNNNNTGC	1 cut(s)	1427
BciT130I	CCWGG	2 cut(s)	33, 1040
BciVI	GTATCC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	1066
BcnI	CCSGG	1 cut(s)	1191
BcoDI	GTCTC	3 cut(s)	110, 287, 1037
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	4 cut(s)	7, 732, 806, 1077
BlsI	GCNGC	4 cut(s)	8, 733, 807, 1078
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	33, 1040, 1191
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	436, 1262
BmiI	GGNNCC	2 cut(s)	183, 956
BmrFI	CCNGG	3 cut(s)	33, 1040, 1191
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	2 cut(s)	435, 1357
BplI	GAGNNNNNCTC	2 cut(s)	1378, 1410
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	1191
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	32, 1038
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1373
Bse118I	RCCGGY	1 cut(s)	438
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	1102
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	33, 1040
BseDI	CCNNGG	2 cut(s)	32, 1038
BseGI	GGATG	4 cut(s)	235, 823, 1313, 1318
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1373
BseMI	GCAATG	1 cut(s)	1102
BseMII	CTCAG	6 cut(s)	104, 336, 549, 681, 840, 978
BseRI	GAGGAG	5 cut(s)	139, 239, 362, 491, 1163
BseXI	GCAGC	3 cut(s)	718, 817, 1063
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	1335
BshFI	GGCC	1 cut(s)	1264
BshNI	GGYRCC	1 cut(s)	181
BshTI	ACCGGT	1 cut(s)	438
BsiHKAI	GWGCWC	1 cut(s)	1396
BsiSI	CCGG	2 cut(s)	439, 1190
BslFI	GGGAC	3 cut(s)	189, 569, 1355
BslI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1373
BsmAI	GTCTC	3 cut(s)	110, 287, 1037
BsmFI	GGGAC	3 cut(s)	189, 569, 1355
BsnI	GGCC	1 cut(s)	1264
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	959, 1396
Bsp143I	GATC	4 cut(s)	424, 769, 1066, 1186
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	1264
BspCNI	CTCAG	6 cut(s)	103, 337, 550, 682, 841, 979
BspFNI	CGCG	1 cut(s)	1335
BspLI	GGNNCC	2 cut(s)	183, 956
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	1181
BspQI	GCTCTTC	2 cut(s)	854, 919
BspT107I	GGYRCC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	1102
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	32, 1038
BssMI	GATC	4 cut(s)	424, 769, 1066, 1186
BssNAI	GTATAC	1 cut(s)	944
Bst1107I	GTATAC	1 cut(s)	944
Bst2UI	CCWGG	2 cut(s)	33, 1040
Bst4CI	ACNGT	3 cut(s)	42, 1269, 1360
Bst6I	CTCTTC	4 cut(s)	698, 785, 854, 919
BstAFI	CTTAAG	1 cut(s)	812
BstDEI	CTNAG	8 cut(s)	80, 90, 186, 345, 558, 690, 849, 987
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	4 cut(s)	235, 823, 1313, 1318
BstFNI	CGCG	1 cut(s)	1335
BstHHI	GCGC	1 cut(s)	1335
BstKTI	GATC	4 cut(s)	427, 772, 1069, 1189
BstMAI	GTCTC	3 cut(s)	110, 287, 1037
BstMBI	GATC	4 cut(s)	424, 769, 1066, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 1400
BstNI	CCWGG	2 cut(s)	33, 1040
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	31, 1038, 1189
BstUI	CGCG	1 cut(s)	1335
BstV1I	GCAGC	3 cut(s)	718, 817, 1063
BstV2I	GAAGAC	2 cut(s)	435, 1357
BstXI	CCANNNNNNTGG	2 cut(s)	281, 1419
BstZ17I	GTATAC	1 cut(s)	944
Bsu36I	CCTNAGG	1 cut(s)	849
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	1264
BtsCI	GGATG	4 cut(s)	235, 823, 1313, 1318
BtsIMutI	CAGTG	2 cut(s)	143, 1210
BveI	ACCTGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	1335
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	436, 1262
CseI	GACGC	2 cut(s)	259, 1256
Csp6I	GTAC	2 cut(s)	182, 825
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	2 cut(s)	433, 1419
CviQI	GTAC	2 cut(s)	182, 825
DdeI	CTNAG	8 cut(s)	80, 90, 186, 345, 558, 690, 849, 987
DpnI	GATC	4 cut(s)	426, 771, 1068, 1188
DpnII	GATC	4 cut(s)	424, 769, 1066, 1186
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	4 cut(s)	698, 785, 854, 919
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	4 cut(s)	698, 785, 854, 919
Eco24I	GRGCYC	1 cut(s)	959
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	1068
Eco81I	CCTNAGG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	31, 1038
EcoT38I	GRGCYC	1 cut(s)	959
FaeI	CATG	2 cut(s)	436, 1422
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	3 cut(s)	189, 569, 1355
FatI	CATG	2 cut(s)	432, 1418
FbaI	TGATCA	1 cut(s)	1066
FblI	GTMKAC	2 cut(s)	943, 1165
Fnu4HI	GCNGC	4 cut(s)	7, 732, 806, 1077
FokI	GGATG	4 cut(s)	242, 830, 1320, 1325
FriOI	GRGCYC	1 cut(s)	959
Fsp4HI	GCNGC	4 cut(s)	7, 732, 806, 1077
GlaI	GCGC	1 cut(s)	1334
GluI	GCNGC	4 cut(s)	7, 732, 806, 1077
HaeIII	GGCC	1 cut(s)	1264
HapII	CCGG	2 cut(s)	439, 1190
HgaI	GACGC	2 cut(s)	259, 1256
HhaI	GCGC	1 cut(s)	1335
Hin1II	CATG	2 cut(s)	436, 1422
Hin6I	GCGC	1 cut(s)	1333
HinP1I	GCGC	1 cut(s)	1333
HincII	GTYRAC	1 cut(s)	1166
HindII	GTYRAC	1 cut(s)	1166
HpaII	CCGG	2 cut(s)	439, 1190
HphI	GGTGA	6 cut(s)	245, 253, 371, 438, 734, 1348
Hpy166II	GTNNAC	2 cut(s)	944, 1166
Hpy188I	TCNGA	5 cut(s)	337, 346, 385, 559, 996
Hpy188III	TCNNGA	6 cut(s)	59, 215, 428, 776, 856, 1305
Hpy8I	GTNNAC	2 cut(s)	944, 1166
HpyAV	CCTTC	5 cut(s)	299, 317, 742, 773, 1192
HpyCH4III	ACNGT	3 cut(s)	42, 1269, 1360
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 1400
HpyF3I	CTNAG	8 cut(s)	80, 90, 186, 345, 558, 690, 849, 987
Hsp92II	CATG	2 cut(s)	436, 1422
HspAI	GCGC	1 cut(s)	1333
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	1066
Kzo9I	GATC	4 cut(s)	424, 769, 1066, 1186
LguI	GCTCTTC	2 cut(s)	854, 919
LmnI	GCTCC	3 cut(s)	126, 954, 1399
Lsp1109I	GCAGC	3 cut(s)	718, 817, 1063
LweI	GCATC	1 cut(s)	718
MaeIII	GTNAC	3 cut(s)	241, 369, 685
MalI	GATC	4 cut(s)	426, 771, 1068, 1188
MboI	GATC	4 cut(s)	424, 769, 1066, 1186
MhlI	GDGCHC	2 cut(s)	959, 1396
MlyI	GAGTC	7 cut(s)	107, 166, 341, 371, 386, 968, 1347
MmeI	TCCRAC	2 cut(s)	127, 298
MseI	TTAA	4 cut(s)	740, 813, 1323, 1452
MslI	CAYNNNNRTG	1 cut(s)	968
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	439, 1190
MspR9I	CCNGG	3 cut(s)	33, 1040, 1191
MvaI	CCWGG	2 cut(s)	33, 1040
MvnI	CGCG	1 cut(s)	1335
MwoI	GCNNNNNNNGC	2 cut(s)	267, 1400
NciI	CCSGG	1 cut(s)	1191
NdeII	GATC	4 cut(s)	424, 769, 1066, 1186
NlaIII	CATG	2 cut(s)	436, 1422
NlaIV	GGNNCC	2 cut(s)	183, 956
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	241, 369
PaqCI	CACCTGC	1 cut(s)	569
PciSI	GCTCTTC	2 cut(s)	854, 919
PfeI	GAWTC	5 cut(s)	197, 211, 338, 659, 991
PfoI	TCCNGGA	1 cut(s)	1189
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	8, 733, 807, 1078
PleI	GAGTC	7 cut(s)	107, 165, 340, 370, 385, 968, 1347
PpsI	GAGTC	7 cut(s)	107, 165, 340, 370, 385, 968, 1347
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	31, 1038
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	31, 1038
PspN4I	GGNNCC	2 cut(s)	183, 956
PspPI	GGNCC	2 cut(s)	436, 1262
RsaI	GTAC	2 cut(s)	183, 826
RsaNI	GTAC	2 cut(s)	182, 825
RseI	CAYNNNNRTG	1 cut(s)	968
SalI	GTCGAC	1 cut(s)	1164
SapI	GCTCTTC	2 cut(s)	854, 919
SaqAI	TTAA	4 cut(s)	740, 813, 1323, 1452
SatI	GCNGC	4 cut(s)	7, 732, 806, 1077
Sau3AI	GATC	4 cut(s)	424, 769, 1066, 1186
Sau96I	GGNCC	2 cut(s)	436, 1262
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	7 cut(s)	107, 166, 341, 371, 386, 968, 1347
ScrFI	CCNGG	3 cut(s)	33, 1040, 1191
SduI	GDGCHC	2 cut(s)	959, 1396
SfaNI	GCATC	1 cut(s)	718
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	968
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	2 cut(s)	646, 760
StyD4I	CCNGG	3 cut(s)	31, 1038, 1189
TaaI	ACNGT	3 cut(s)	42, 1269, 1360
TaqI	TCGA	4 cut(s)	890, 1146, 1165, 1437
TaqII	GACCGA	1 cut(s)	241
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	5 cut(s)	197, 211, 338, 659, 991
Tru1I	TTAA	4 cut(s)	740, 813, 1323, 1452
Tru9I	TTAA	4 cut(s)	740, 813, 1323, 1452
TscAI	CASTG	2 cut(s)	143, 1210
TseFI	GTSAC	2 cut(s)	241, 369
TseI	GCWGC	3 cut(s)	731, 805, 1076
Tsp45I	GTSAC	2 cut(s)	241, 369
TspDTI	ATGAA	3 cut(s)	210, 318, 846
TspGWI	ACGGA	2 cut(s)	133, 907
TspRI	CASTG	2 cut(s)	143, 1210
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	4 cut(s)	53, 218, 536, 1274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1416
XmiI	GTMKAC	2 cut(s)	943, 1165
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.