Rorug01G0388200

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
49941010 .. 49944158
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0388200.1

Sequence Viewer

Length: 1917 bp
ATGAAGCAGTTGAGTGAAGAATTTTGTTCGTCGTTGTTTTATTACAATGCGGGCATAGACATAGGTAATGAGTCTAAAATGTTTCAAGATGTTGGTGAACAAATTGTGAAAAAGTGTAATGGCTTGCCTCTTGCTGCAAAGACGTTAGGTAGCCTCATGCGTGAGAAAAGAACATTAAAAGAGTGGGAAGATGTTTTAAGTAGTGAGTTATGGGAGCTAGAAGCTATTGAACAACAAGTTTTTCGACCACTATTACTAAGTTATATTGATTTGACCGCAGAAATTAGAAATTGTCTTTTGTATTGTGTGATCTTCCCAAAAGATTATGTGTATGATAGAGATAATTTGGTTGAGTTGTGGATGTCGCAAAATTATTTGAATGTAGAAGGAAGTAAAGAAACGGAAAGAGTTGGTCAAAAGTATTTTAATAAATTAGTAATGCGGTCTTTTTTTCAAGAAGTTGAGGTGGATGAATATGGGGAAACAAACTGCAAAATACATGATATTATACATGATTTTATGTCCTATATGACGAAGAAAGAATGTTTAATTATGAATGGTGGGGCAGTTGCGCCATTTTTCCTCCCGAGAGTAAATGAAAAGGTTCGTCATTTGACTCTAATAAATCCCCACATTTTAATTAATTTTCGCAGCTGTGAAAATTTGCGTACCCTCGTAGTTTTGGATGATCGTCATGGTTACGATTTTTGCACTGAATTGCAGTTGAAATACATAAGGACATTAACCTGGTTTGATAGTAGGATTAAGGCGATTCCAAATGAGATAAGTGGATTGATCCATTTGAGGTATCTTGATTTATCGGAGGAAGGGAGGTTGGAGGAATCGGAGGGCGGGAGGTTGGAGGAATTACCGGACACCATGGGTAGCTTATACAATCTGCAAACCTTGCGACTAGTTAAGTGCCGTCGCCTCAAGAAAGTAGATTTGGGAAGGCTAATTAACTTGAGGCATCTTAGTGTCAGCGGCTGTGAGCATCTAAAGCTATGGGGAATAGAGAGACTAACAAATCTGCGAACGCTAGATGAGTTTTATGTCCAACATGGTGATGAAGGAAACAAGTTGGAACATCTGAAAAACTTGAACCAGCTTCAAGGACGTCTTACTATTACATATCAGGGAGGACCGGTAGCGGGAGAGGGAGCAGCCATCATTGTTAATAAGGCGCACCTCCTTCATTTGGCCCTAGCTATTGGATTTTTGCATAGTCAATGGGATCTGACGGCCCTACAACCCCCTCCAGGTTTGGAATCTTTGAGTATCCATGGCTGTATCTTGTCGACCGATTGGTTGTCGTCTTTACGCAGCTTGAGACTGCTTACACTTTCAGGGTGTGATTTTTTGCCTTGCTTAGGAAATCTGGCATCCCTTGAATCATTGAATATTAAGCGCGTTTCTGTGAGTAAGGTAGGAGTTAAGTTTTTGAAAATACATGATCATGATCAATCAGAAACGTCATTCCCGAAATTGAAGCAACTCACCTTCGACATCATGCCTAACTGGAAAGAGTGGGAAGGAGTGAAGGAGGATTCTGAGAACATGGGAATAATAATGCCATGCCTTTCCGAGCTGACAATTTCTAGGTGCTATTGGCTAGAAGCACTGCCGGAATTCCTGTGGAAGACACCACTTCAGAAATTGCACATCAGCGAATCTCGAATTCTCCAGAAACTATACAGACAAGGAAAAGAAAGCTTGCTTCACCCGTTCTCAGTCAATTTCAGAAGACTCGATTGCTCCAAATCTCTGCATTCCGTCATGAAGAAGAGTTACACTTCTATCGCTCATCCAAAAGGAAAAGAGAGGTTTGACCAGGACAAGGGTGGTTATGGTGATTTAGCACTCACGGATCCTCCAAGGGGTAAAAGTGTTCAATTTCCATTTGCTGTGACAGATTGA

Protein Analysis

638

Amino Acids

73.4

Weight (kDa)

6.49

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 104 - 173 9.9e-25 Disease resistance protein Winged helix domain
LRR_14 PF23598 260 - 502 8.8e-15 Leucine-rich repeat region
LRR_R13L1-DRL21 PF25019 361 - 470 1.3e-09 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1120
AccI GTMKAC 1 cut(s) 1298
AccII CGCG 1 cut(s) 1410
AciI CCGC 6 cut(s) 50, 276, 442, 852, 984, 1151
AclWI GGATC 4 cut(s) 790, 1242, 1862, 1875
AcsI RAATTY 4 cut(s) 20, 661, 1628, 1677
AcuI CTGAAG 1 cut(s) 1634
AcyI GRCGYC 1 cut(s) 1117
AfaI GTAC 1 cut(s) 670
AfiI CCNNNNNNNGG 6 cut(s) 1151, 1198, 1259, 1370, 1837, 1877
AgeI ACCGGT 1 cut(s) 1144
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 3 cut(s) 746, 1258, 1830
AjuI GAANNNNNNNTTGG 2 cut(s) 929, 961
Alw26I GTCTC 2 cut(s) 1012, 1324
AlwI GGATC 4 cut(s) 790, 1242, 1862, 1875
AlwNI CAGNNNCTG 1 cut(s) 987
Ama87I CYCGRG 1 cut(s) 586
AoxI GGCC 2 cut(s) 1200, 1242
ApeKI GCWGC 4 cut(s) 134, 651, 1163, 1323
ApoI RAATTY 4 cut(s) 20, 661, 1628, 1677
AseI ATTAAT 1 cut(s) 642
AsiGI ACCGGT 1 cut(s) 1144
Asp700I GAANNNNTTC 1 cut(s) 603
AspLEI GCGC 3 cut(s) 574, 1186, 1410
AspS9I GGNCC 3 cut(s) 1142, 1201, 1243
AsuHPI GGTGA 5 cut(s) 107, 1076, 1489, 1712, 1862
AvaI CYCGRG 1 cut(s) 586
AvaII GGWCC 1 cut(s) 1142
BamHI GGATCC 1 cut(s) 1867
BarI GAAGNNNNNNTAC 2 cut(s) 1772, 1804
BbsI GAAGAC 2 cut(s) 1646, 1750
BbvI GCAGC 4 cut(s) 121, 663, 1175, 1335
BccI CCATC 1 cut(s) 1175
BceAI ACGGC 2 cut(s) 909, 1257
BciT130I CCWGG 3 cut(s) 748, 1260, 1832
BciVI GTATCC 1 cut(s) 1289
BclI TGATCA 2 cut(s) 1453, 1459
BcoDI GTCTC 2 cut(s) 1012, 1324
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 6 cut(s) 218, 914, 1040, 1205, 1599, 1613
BfuI GTATCC 1 cut(s) 1289
BisI GCNGC 5 cut(s) 135, 652, 985, 1164, 1324
BlsI GCNGC 5 cut(s) 136, 653, 986, 1165, 1325
Bme1390I CCNGG 3 cut(s) 748, 1260, 1832
Bme18I GGWCC 1 cut(s) 1142
BmeT110I CYCGRG 1 cut(s) 586
BmgT120I GGNCC 3 cut(s) 1142, 1201, 1243
BmiI GGNNCC 1 cut(s) 1869
BmrFI CCNGG 3 cut(s) 748, 1260, 1832
BmsI GCATC 3 cut(s) 979, 1003, 1391
BpiI GAAGAC 2 cut(s) 1646, 1750
BpmI CTGGAG 2 cut(s) 1242, 1667
Bpu10I CCTNAGC 1 cut(s) 1369
BpuEI CTTGAG 3 cut(s) 917, 985, 1348
BsaBI GATNNNNATC 1 cut(s) 1458
BsaHI GRCGYC 1 cut(s) 1117
BsaJI CCNNGG 3 cut(s) 879, 1282, 1874
BsaWI WCCGGW 2 cut(s) 871, 1144
BsaXI ACNNNNNCTCC 4 cut(s) 1131, 1161, 1855, 1885
Bsc4I CCNNNNNNNGG 6 cut(s) 1151, 1198, 1259, 1370, 1837, 1877
Bse118I RCCGGY 1 cut(s) 1144
Bse1I ACTGG 1 cut(s) 1523
Bse8I GATNNNNATC 1 cut(s) 1458
BseBI CCWGG 3 cut(s) 748, 1260, 1832
BseDI CCNNGG 3 cut(s) 879, 1282, 1874
BseGI GGATG 5 cut(s) 366, 475, 691, 1382, 1804
BseJI GATNNNNATC 1 cut(s) 1458
BseLI CCNNNNNNNGG 6 cut(s) 1151, 1198, 1259, 1370, 1837, 1877
BseMII CTCAG 2 cut(s) 1542, 1743
BseNI ACTGG 1 cut(s) 1523
BseXI GCAGC 4 cut(s) 121, 663, 1175, 1335
Bsh1236I CGCG 1 cut(s) 1410
Bsh1285I CGRYCG 1 cut(s) 1302
BshFI GGCC 2 cut(s) 1202, 1244
BshTI ACCGGT 1 cut(s) 1144
BsiEI CGRYCG 1 cut(s) 1302
BsiHKCI CYCGRG 1 cut(s) 586
BsiSI CCGG 3 cut(s) 872, 1145, 1625
BslI CCNNNNNNNGG 6 cut(s) 1151, 1198, 1259, 1370, 1837, 1877
BsmAI GTCTC 2 cut(s) 1012, 1324
BsmI GAATGC 1 cut(s) 1768
BsnI GGCC 2 cut(s) 1202, 1244
BsoBI CYCGRG 1 cut(s) 586
Bsp143I GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
Bsp19I CCATGG 2 cut(s) 879, 1282
BspACI CCGC 6 cut(s) 50, 276, 442, 852, 984, 1151
BspANI GGCC 2 cut(s) 1202, 1244
BspCNI CTCAG 2 cut(s) 1543, 1742
BspFNI CGCG 1 cut(s) 1410
BspHI TCATGA 2 cut(s) 1456, 1776
BspLI GGNNCC 1 cut(s) 1869
BspPI GGATC 4 cut(s) 790, 1242, 1862, 1875
BsrFI RCCGGY 1 cut(s) 1144
BsrI ACTGG 1 cut(s) 1523
BssAI RCCGGY 1 cut(s) 1144
BssECI CCNNGG 3 cut(s) 879, 1282, 1874
BssMI GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
BssNI GRCGYC 1 cut(s) 1117
BssT1I CCWWGG 3 cut(s) 879, 1282, 1874
Bst2UI CCWGG 3 cut(s) 748, 1260, 1832
Bst6I CTCTTC 1 cut(s) 1778
BstACI GRCGYC 1 cut(s) 1117
BstAPI GCANNNNNTGC 1 cut(s) 907
BstC8I GCNNGC 3 cut(s) 52, 125, 1715
BstDEI CTNAG 5 cut(s) 257, 974, 1369, 1551, 1729
BstDSI CCRYGG 2 cut(s) 879, 1282
BstENI CCTNNNNNAGG 1 cut(s) 1368
BstF5I GGATG 5 cut(s) 366, 475, 691, 1382, 1804
BstFNI CGCG 1 cut(s) 1410
BstHHI GCGC 3 cut(s) 574, 1186, 1410
BstKTI GATC 7 cut(s) 312, 691, 798, 1237, 1456, 1462, 1870
BstMAI GTCTC 2 cut(s) 1012, 1324
BstMBI GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
BstMCI CGRYCG 1 cut(s) 1302
BstMWI GCNNNNNNNGC 2 cut(s) 907, 1000
BstNI CCWGG 3 cut(s) 748, 1260, 1832
BstSCI CCNGG 3 cut(s) 746, 1258, 1830
BstUI CGCG 1 cut(s) 1410
BstV1I GCAGC 4 cut(s) 121, 663, 1175, 1335
BstV2I GAAGAC 2 cut(s) 1646, 1750
BstX2I RGATCY 2 cut(s) 1234, 1867
BstYI RGATCY 2 cut(s) 1234, 1867
BsuI GTATCC 1 cut(s) 1289
BsuRI GGCC 2 cut(s) 1202, 1244
BtgI CCRYGG 2 cut(s) 879, 1282
BtsCI GGATG 5 cut(s) 366, 475, 691, 1382, 1804
BtsI GCAGTG 1 cut(s) 1619
BtsIMutI CAGTG 2 cut(s) 711, 1619
Cac8I GCNNGC 3 cut(s) 52, 125, 1715
CaiI CAGNNNCTG 1 cut(s) 987
CciI TCATGA 2 cut(s) 1456, 1776
CfoI GCGC 3 cut(s) 574, 1186, 1410
Cfr10I RCCGGY 1 cut(s) 1144
Cfr13I GGNCC 3 cut(s) 1142, 1201, 1243
CsiI ACCWGGT 1 cut(s) 746
Csp6I GTAC 1 cut(s) 669
CspAI ACCGGT 1 cut(s) 1144
CviQI GTAC 1 cut(s) 669
DdeI CTNAG 5 cut(s) 257, 974, 1369, 1551, 1729
DpnI GATC 7 cut(s) 311, 690, 797, 1236, 1455, 1461, 1869
DpnII GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
Eam1104I CTCTTC 1 cut(s) 1778
EarI CTCTTC 1 cut(s) 1778
Eco130I CCWWGG 3 cut(s) 879, 1282, 1874
Eco47I GGWCC 1 cut(s) 1142
Eco57I CTGAAG 1 cut(s) 1634
Eco88I CYCGRG 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 1368
EcoRI GAATTC 2 cut(s) 1628, 1677
EcoRII CCWGG 3 cut(s) 746, 1258, 1830
EcoT14I CCWWGG 3 cut(s) 879, 1282, 1874
ErhI CCWWGG 3 cut(s) 879, 1282, 1874
FalI AAGNNNNNCTT 2 cut(s) 1104, 1136
FauI CCCGC 3 cut(s) 43, 845, 1144
FbaI TGATCA 2 cut(s) 1453, 1459
FblI GTMKAC 1 cut(s) 1298
Fnu4HI GCNGC 5 cut(s) 135, 652, 985, 1164, 1324
FokI GGATG 5 cut(s) 373, 482, 698, 1369, 1791
Fsp4HI GCNGC 5 cut(s) 135, 652, 985, 1164, 1324
FspBI CTAG 6 cut(s) 218, 914, 1040, 1205, 1599, 1613
GlaI GCGC 3 cut(s) 573, 1185, 1409
GluI GCNGC 5 cut(s) 135, 652, 985, 1164, 1324
GsuI CTGGAG 2 cut(s) 1242, 1667
HaeIII GGCC 2 cut(s) 1202, 1244
HapII CCGG 3 cut(s) 872, 1145, 1625
HhaI GCGC 3 cut(s) 574, 1186, 1410
Hin1I GRCGYC 1 cut(s) 1117
Hin6I GCGC 3 cut(s) 572, 1184, 1408
HinP1I GCGC 3 cut(s) 572, 1184, 1408
HincII GTYRAC 1 cut(s) 1299
HindII GTYRAC 1 cut(s) 1299
HindIII AAGCTT 1 cut(s) 1711
HinfI GANTC 9 cut(s) 71, 616, 772, 842, 1268, 1391, 1547, 1670, 1746
HpaII CCGG 3 cut(s) 872, 1145, 1625
HphI GGTGA 5 cut(s) 107, 1076, 1489, 1712, 1862
Hpy166II GTNNAC 2 cut(s) 98, 1299
Hpy188I TCNGA 9 cut(s) 823, 847, 1092, 1239, 1468, 1552, 1585, 1653, 1742
Hpy8I GTNNAC 2 cut(s) 98, 1299
Hpy99I CGWCG 2 cut(s) 34, 930
HpyAV CCTTC 8 cut(s) 380, 821, 945, 1064, 1202, 1510, 1526, 1534
HpyCH4IV ACGT 3 cut(s) 143, 1117, 1472
HpyCH4V TGCA 8 cut(s) 137, 492, 711, 721, 901, 1222, 1660, 1768
HpyF10VI GCNNNNNNNGC 2 cut(s) 907, 1000
HpyF3I CTNAG 5 cut(s) 257, 974, 1369, 1551, 1729
HpySE526I ACGT 3 cut(s) 143, 1117, 1472
Hsp92I GRCGYC 1 cut(s) 1117
HspAI GCGC 3 cut(s) 572, 1184, 1408
Ksp22I TGATCA 2 cut(s) 1453, 1459
Kzo9I GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
LmnI GCTCC 3 cut(s) 214, 1160, 1760
Lsp1109I GCAGC 4 cut(s) 121, 663, 1175, 1335
LweI GCATC 3 cut(s) 979, 1003, 1391
MabI ACCWGGT 1 cut(s) 746
MaeI CTAG 6 cut(s) 218, 914, 1040, 1205, 1599, 1613
MaeII ACGT 3 cut(s) 143, 1117, 1472
MaeIII GTNAC 3 cut(s) 698, 1787, 1906
MalI GATC 7 cut(s) 311, 690, 797, 1236, 1455, 1461, 1869
MboI GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
MboII GAAGA 8 cut(s) 29, 200, 304, 547, 1651, 1755, 1792, 1795
MflI RGATCY 2 cut(s) 1234, 1867
MlyI GAGTC 3 cut(s) 80, 610, 1740
MmeI TCCRAC 4 cut(s) 816, 840, 1062, 1081
MroXI GAANNNNTTC 1 cut(s) 603
MslI CAYNNNNRTG 3 cut(s) 975, 1065, 1455
MspA1I CMGCKG 2 cut(s) 654, 984
MspI CCGG 3 cut(s) 872, 1145, 1625
MspR9I CCNGG 3 cut(s) 748, 1260, 1832
Mva1269I GAATGC 1 cut(s) 1768
MvaI CCWGG 3 cut(s) 748, 1260, 1832
MvnI CGCG 1 cut(s) 1410
MwoI GCNNNNNNNGC 2 cut(s) 907, 1000
NcoI CCATGG 2 cut(s) 879, 1282
NdeII GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
NlaIV GGNNCC 1 cut(s) 1869
NmuCI GTSAC 1 cut(s) 1906
PacI TTAATTAA 1 cut(s) 642
PagI TCATGA 2 cut(s) 1456, 1776
PcsI WCGNNNNNNNCGW 1 cut(s) 1478
PctI GAATGC 1 cut(s) 1768
PdmI GAANNNNTTC 1 cut(s) 603
PfeI GAWTC 6 cut(s) 772, 842, 1268, 1391, 1547, 1670
PinAI ACCGGT 1 cut(s) 1144
PkrI GCNGC 5 cut(s) 136, 653, 986, 1165, 1325
PleI GAGTC 3 cut(s) 79, 610, 1740
PpsI GAGTC 3 cut(s) 79, 610, 1740
PshBI ATTAAT 1 cut(s) 642
Psp6I CCWGG 3 cut(s) 746, 1258, 1830
PspGI CCWGG 3 cut(s) 746, 1258, 1830
PspN4I GGNNCC 1 cut(s) 1869
PspPI GGNCC 3 cut(s) 1142, 1201, 1243
PstNI CAGNNNCTG 1 cut(s) 987
PsuI RGATCY 2 cut(s) 1234, 1867
PvuII CAGCTG 1 cut(s) 654
RsaI GTAC 1 cut(s) 670
RsaNI GTAC 1 cut(s) 669
RseI CAYNNNNRTG 3 cut(s) 975, 1065, 1455
SalI GTCGAC 1 cut(s) 1297
SatI GCNGC 5 cut(s) 135, 652, 985, 1164, 1324
Sau3AI GATC 7 cut(s) 309, 688, 795, 1234, 1453, 1459, 1867
Sau96I GGNCC 3 cut(s) 1142, 1201, 1243
SchI GAGTC 3 cut(s) 80, 610, 1740
ScrFI CCNGG 3 cut(s) 748, 1260, 1832
SexAI ACCWGGT 1 cut(s) 746
SfaNI GCATC 3 cut(s) 979, 1003, 1391
SinI GGWCC 1 cut(s) 1142
SmiMI CAYNNNNRTG 3 cut(s) 975, 1065, 1455
SmlI CTYRAG 3 cut(s) 932, 964, 1327
SmoI CTYRAG 3 cut(s) 932, 964, 1327
SpeI ACTAGT 1 cut(s) 913
SsiI CCGC 6 cut(s) 50, 276, 442, 852, 984, 1151
SspI AATATT 1 cut(s) 1402
SspMI CTAG 6 cut(s) 218, 914, 1040, 1205, 1599, 1613
StyD4I CCNGG 3 cut(s) 746, 1258, 1830
StyI CCWWGG 3 cut(s) 879, 1282, 1874
TaiI ACGT 3 cut(s) 146, 1120, 1475
TaqI TCGA 5 cut(s) 244, 1298, 1503, 1675, 1749
TaqII GACCGA 1 cut(s) 1316
TauI GCSGC 1 cut(s) 987
TfiI GAWTC 6 cut(s) 772, 842, 1268, 1391, 1547, 1670
TscAI CASTG 2 cut(s) 718, 1626
TseFI GTSAC 1 cut(s) 1906
TseI GCWGC 4 cut(s) 134, 651, 1163, 1323
Tsp45I GTSAC 1 cut(s) 1906
TspDTI ATGAA 7 cut(s) 17, 486, 569, 612, 1083, 1184, 1793
TspGWI ACGGA 3 cut(s) 416, 1762, 1880
TspRI CASTG 2 cut(s) 718, 1626
VpaK11BI GGWCC 1 cut(s) 1142
VspI ATTAAT 1 cut(s) 642
XagI CCTNNNNNAGG 1 cut(s) 1368
XapI RAATTY 4 cut(s) 20, 661, 1628, 1677
XcmI CCANNNNNNNNNTGG 1 cut(s) 1838
XmiI GTMKAC 1 cut(s) 1298
XmnI GAANNNNTTC 1 cut(s) 603
XspI CTAG 6 cut(s) 218, 914, 1040, 1205, 1599, 1613
ZraI GACGTC 1 cut(s) 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.