Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000554.1

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

75802 .. 78982

Gene Structure 3181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000554.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

atgggcggcttttggggaattgaagtaaaaccagggaaacagtatcctattgaatttccagaagatgaggaagcaaggcttaggattactcaggcgactttaggtctcggcgactcaaaggggaggagcatagttcagtgctccgttggagataagagtcctatctttttgtgttctttggtacctaagaagaatgaatcgtgtcccttgaatcttgaatttgaggaggatggtgagttggtgaccttttcggtcattggcaaacaaagcgtccatctctctggctactttgagacttatgatgaaggagaagctgttggagaaggatatgagtcacttttggatagatgtcagtcaaatggctctgaggacaatacaaaaggtgcaggtgtccctgttttggaaagtgaagatgacgatggctttccaatatccacgaaaaacaaaaccaatattgagaagcctgaatcagcaacaggacacagagataaagtaactgagaaaaccaagaagaggaaagcaaaagatggtgatgatgctgctggattaaaaaggaaggttgaaaatattgaccaagatcatcaagaagggcaaaagaagagtaagaaaaagcagcaacttaaggatggaagtactgatgaaaaggaaaagcaacctgaggtcttgaagagcaaaaatgagcatggacaactgctatctaataagaagagccctgacatcaaaatggactctgttcctactgagaatcagacaggagagaaaaagaagaagaagaagaacaagaagaaatcccaggagactgaagaaaaaactaatgctgatcaaactgctgctaatatggaaaaaagcaatggcaagtcatcatctaaagtgagaacctttccaaatggattggttatcgaggaggtttctatgggtcgaccagatggcaaaagagctgatccgggaaagaaggtcagtgttcgctacattgggaagctaaagaatgggaaacaatttgacgcaaatgttatagggccaccgttcaaattcacattaggtgtaggacaagttatatcaggatgggatgttggggttaaaggtatgcgcgttggggacaaaagaagactcaccgttccaccatcaatggggtatggacagagaggtgctccccctgcgataccaccaaactcatcaaacgtgaaaacttcatttgtatctgatttgcaattttacatagtattagttgttgcatcttctaaaacatatctacctccaggtatgcgcgttggggacaaaagaagactcaccgttccaccatcaatggggtatggacagagaggtgctccccctgcgataccaccaaactcatggcttgtgtttgatgtcgagttggttgctgttaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

462

Amino Acids

50.56

Weight (kDa)

9.12

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
Acc36I	ACCTGC	1 cut(s)	377
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	919
AccII	CGCG	2 cut(s)	1089, 1266
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	935
AcsI	RAATTY	3 cut(s)	53, 218, 1028
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	2 cut(s)	183, 634
AfiI	CCNNNNNNNGG	4 cut(s)	400, 513, 1127, 1304
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	7 cut(s)	23, 53, 211, 218, 563, 667, 1027
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	31, 792, 1255
AluBI	AGCT	3 cut(s)	314, 938, 979
AluI	AGCT	3 cut(s)	314, 938, 979
Alw21I	GWGCWC	3 cut(s)	143, 1150, 1327
Alw26I	GTCTC	3 cut(s)	110, 287, 791
AlwI	GGATC	1 cut(s)	935
AoxI	GGCC	1 cut(s)	1016
ApeKI	GCWGC	3 cut(s)	539, 613, 830
ApoI	RAATTY	3 cut(s)	53, 218, 1028
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	2 cut(s)	1089, 1266
AspS9I	GGNCC	1 cut(s)	1016
AsuC2I	CCSGG	1 cut(s)	945
AsuHPI	GGTGA	5 cut(s)	245, 253, 542, 1102, 1279
AxyI	CCTNAGG	1 cut(s)	657
BanI	GGYRCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	713
BbsI	GAAGAC	2 cut(s)	1111, 1288
Bbv12I	GWGCWC	3 cut(s)	143, 1150, 1327
BbvI	GCAGC	3 cut(s)	526, 625, 817
BccI	CCATC	9 cut(s)	224, 282, 413, 521, 620, 920, 1056, 1129, 1306
BcgI	CGANNNNNNTGC	1 cut(s)	1358
BciT130I	CCWGG	3 cut(s)	33, 794, 1257
BciVI	GTATCC	1 cut(s)	54
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	1 cut(s)	945
BcoDI	GTCTC	3 cut(s)	110, 287, 791
BfrI	CTTAAG	1 cut(s)	620
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	4 cut(s)	7, 540, 614, 831
BlsI	GCNGC	4 cut(s)	8, 541, 615, 832
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	4 cut(s)	33, 794, 945, 1257
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	1016
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	33, 794, 945, 1257
BmsI	GCATC	2 cut(s)	526, 1241
BpiI	GAAGAC	2 cut(s)	1111, 1288
BplI	GAGNNNNNCTC	4 cut(s)	1132, 1164, 1309, 1341
BpmI	CTGGAG	1 cut(s)	1239
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	945
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	32, 792
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	4 cut(s)	400, 513, 1127, 1304
Bse21I	CCTNAGG	1 cut(s)	657
Bse3DI	GCAATG	1 cut(s)	856
BseBI	CCWGG	3 cut(s)	33, 794, 1257
BseDI	CCNNGG	2 cut(s)	32, 792
BseGI	GGATG	4 cut(s)	235, 631, 1067, 1072
BseLI	CCNNNNNNNGG	4 cut(s)	400, 513, 1127, 1304
BseMI	GCAATG	1 cut(s)	856
BseMII	CTCAG	5 cut(s)	104, 357, 489, 648, 732
BseRI	GAGGAG	3 cut(s)	139, 239, 917
BseXI	GCAGC	3 cut(s)	526, 625, 817
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	2 cut(s)	1089, 1266
BshFI	GGCC	1 cut(s)	1018
BshNI	GGYRCC	1 cut(s)	181
BsiHKAI	GWGCWC	3 cut(s)	143, 1150, 1327
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	4 cut(s)	189, 377, 1109, 1286
BslI	CCNNNNNNNGG	4 cut(s)	400, 513, 1127, 1304
BsmAI	GTCTC	3 cut(s)	110, 287, 791
BsmFI	GGGAC	4 cut(s)	189, 377, 1109, 1286
BsnI	GGCC	1 cut(s)	1018
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	4 cut(s)	143, 713, 1150, 1327
Bsp143I	GATC	3 cut(s)	577, 820, 940
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	1018
BspCNI	CTCAG	5 cut(s)	103, 358, 490, 649, 733
BspFNI	CGCG	2 cut(s)	1089, 1266
BspLI	GGNNCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	935
BspQI	GCTCTTC	2 cut(s)	662, 701
BspT107I	GGYRCC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	856
BssECI	CCNNGG	2 cut(s)	32, 792
BssMI	GATC	3 cut(s)	577, 820, 940
Bst2UI	CCWGG	3 cut(s)	33, 794, 1257
Bst4CI	ACNGT	4 cut(s)	42, 1023, 1114, 1291
Bst6I	CTCTTC	4 cut(s)	506, 593, 662, 701
BstAFI	CTTAAG	1 cut(s)	620
BstDEI	CTNAG	7 cut(s)	80, 90, 186, 366, 498, 657, 741
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	4 cut(s)	235, 631, 1067, 1072
BstFNI	CGCG	2 cut(s)	1089, 1266
BstHHI	GCGC	2 cut(s)	1089, 1266
BstKTI	GATC	3 cut(s)	580, 823, 943
BstMAI	GTCTC	3 cut(s)	110, 287, 791
BstMBI	GATC	3 cut(s)	577, 820, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	267, 1154, 1331
BstNI	CCWGG	3 cut(s)	33, 794, 1257
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	4 cut(s)	31, 792, 943, 1255
BstUI	CGCG	2 cut(s)	1089, 1266
BstV1I	GCAGC	3 cut(s)	526, 625, 817
BstV2I	GAAGAC	2 cut(s)	1111, 1288
BstXI	CCANNNNNNTGG	2 cut(s)	281, 1350
Bsu36I	CCTNAGG	1 cut(s)	657
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	1018
BtsCI	GGATG	4 cut(s)	235, 631, 1067, 1072
BtsIMutI	CAGTG	2 cut(s)	143, 964
BveI	ACCTGC	1 cut(s)	377
CfoI	GCGC	2 cut(s)	1089, 1266
Cfr13I	GGNCC	1 cut(s)	1016
CseI	GACGC	2 cut(s)	259, 1010
Csp6I	GTAC	2 cut(s)	182, 633
CviAII	CATG	2 cut(s)	683, 1350
CviQI	GTAC	2 cut(s)	182, 633
DdeI	CTNAG	7 cut(s)	80, 90, 186, 366, 498, 657, 741
DpnI	GATC	3 cut(s)	579, 822, 942
DpnII	GATC	3 cut(s)	577, 820, 940
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	4 cut(s)	506, 593, 662, 701
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	4 cut(s)	506, 593, 662, 701
Eco24I	GRGCYC	1 cut(s)	713
Eco31I	GGTCTC	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	822
Eco81I	CCTNAGG	1 cut(s)	657
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRII	CCWGG	3 cut(s)	31, 792, 1255
EcoT38I	GRGCYC	1 cut(s)	713
FaeI	CATG	2 cut(s)	686, 1353
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	4 cut(s)	189, 377, 1109, 1286
FatI	CATG	2 cut(s)	682, 1349
FbaI	TGATCA	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	919
Fnu4HI	GCNGC	4 cut(s)	7, 540, 614, 831
FokI	GGATG	4 cut(s)	242, 638, 1074, 1079
FriOI	GRGCYC	1 cut(s)	713
Fsp4HI	GCNGC	4 cut(s)	7, 540, 614, 831
GlaI	GCGC	2 cut(s)	1088, 1265
GluI	GCNGC	4 cut(s)	7, 540, 614, 831
GsuI	CTGGAG	1 cut(s)	1239
HaeIII	GGCC	1 cut(s)	1018
HapII	CCGG	1 cut(s)	944
HgaI	GACGC	2 cut(s)	259, 1010
HhaI	GCGC	2 cut(s)	1089, 1266
Hin1II	CATG	2 cut(s)	686, 1353
Hin6I	GCGC	2 cut(s)	1087, 1264
HinP1I	GCGC	2 cut(s)	1087, 1264
HincII	GTYRAC	1 cut(s)	920
HindII	GTYRAC	1 cut(s)	920
HpaII	CCGG	1 cut(s)	944
HphI	GGTGA	5 cut(s)	245, 253, 542, 1102, 1279
Hpy166II	GTNNAC	1 cut(s)	920
Hpy188I	TCNGA	3 cut(s)	367, 750, 1201
Hpy188III	TCNNGA	5 cut(s)	59, 215, 584, 664, 1059
Hpy8I	GTNNAC	1 cut(s)	920
HpyAV	CCTTC	5 cut(s)	299, 317, 550, 581, 946
HpyCH4III	ACNGT	4 cut(s)	42, 1023, 1114, 1291
HpyCH4IV	ACGT	1 cut(s)	1179
HpyCH4V	TGCA	3 cut(s)	386, 1207, 1232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	267, 1154, 1331
HpyF3I	CTNAG	7 cut(s)	80, 90, 186, 366, 498, 657, 741
HpySE526I	ACGT	1 cut(s)	1179
Hsp92II	CATG	2 cut(s)	686, 1353
HspAI	GCGC	2 cut(s)	1087, 1264
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	3 cut(s)	577, 820, 940
LguI	GCTCTTC	2 cut(s)	662, 701
LmnI	GCTCC	4 cut(s)	126, 146, 1153, 1330
Lsp1109I	GCAGC	3 cut(s)	526, 625, 817
LweI	GCATC	2 cut(s)	526, 1241
MaeII	ACGT	1 cut(s)	1179
MaeIII	GTNAC	3 cut(s)	241, 333, 493
MalI	GATC	3 cut(s)	579, 822, 942
MboI	GATC	3 cut(s)	577, 820, 940
MhlI	GDGCHC	4 cut(s)	143, 713, 1150, 1327
MluCI	AATT	7 cut(s)	18, 53, 218, 995, 1028, 1208, 1384
MlyI	GAGTC	6 cut(s)	107, 166, 341, 722, 1101, 1278
MmeI	TCCRAC	2 cut(s)	127, 298
MseI	TTAA	4 cut(s)	548, 621, 1077, 1383
MslI	CAYNNNNRTG	1 cut(s)	722
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	4 cut(s)	33, 794, 945, 1257
MvaI	CCWGG	3 cut(s)	33, 794, 1257
MvnI	CGCG	2 cut(s)	1089, 1266
MwoI	GCNNNNNNNGC	3 cut(s)	267, 1154, 1331
NciI	CCSGG	1 cut(s)	945
NdeII	GATC	3 cut(s)	577, 820, 940
NlaIII	CATG	2 cut(s)	686, 1353
NlaIV	GGNNCC	1 cut(s)	183
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	241, 333
PaqCI	CACCTGC	1 cut(s)	377
PciSI	GCTCTTC	2 cut(s)	662, 701
PfeI	GAWTC	4 cut(s)	197, 211, 467, 745
PfoI	TCCNGGA	1 cut(s)	943
PkrI	GCNGC	4 cut(s)	8, 541, 615, 832
PleI	GAGTC	6 cut(s)	107, 165, 340, 722, 1101, 1278
PpsI	GAGTC	6 cut(s)	107, 165, 340, 722, 1101, 1278
Psp6I	CCWGG	3 cut(s)	31, 792, 1255
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	3 cut(s)	31, 792, 1255
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	1016
RsaI	GTAC	2 cut(s)	183, 634
RsaNI	GTAC	2 cut(s)	182, 633
RseI	CAYNNNNRTG	1 cut(s)	722
SalI	GTCGAC	1 cut(s)	918
SapI	GCTCTTC	2 cut(s)	662, 701
SaqAI	TTAA	4 cut(s)	548, 621, 1077, 1383
SatI	GCNGC	4 cut(s)	7, 540, 614, 831
Sau3AI	GATC	3 cut(s)	577, 820, 940
Sau96I	GGNCC	1 cut(s)	1016
ScaI	AGTACT	1 cut(s)	634
SchI	GAGTC	6 cut(s)	107, 166, 341, 722, 1101, 1278
ScrFI	CCNGG	4 cut(s)	33, 794, 945, 1257
SduI	GDGCHC	4 cut(s)	143, 713, 1150, 1327
SfaNI	GCATC	2 cut(s)	526, 1241
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	7 cut(s)	18, 53, 218, 995, 1028, 1208, 1384
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	2 cut(s)	454, 568
StyD4I	CCNGG	4 cut(s)	31, 792, 943, 1255
TaaI	ACNGT	4 cut(s)	42, 1023, 1114, 1291
TaiI	ACGT	1 cut(s)	1182
TaqI	TCGA	3 cut(s)	900, 919, 1368
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	7 cut(s)	18, 53, 218, 995, 1028, 1208, 1384
TatI	WGTACW	1 cut(s)	632
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	4 cut(s)	197, 211, 467, 745
Tru1I	TTAA	4 cut(s)	548, 621, 1077, 1383
Tru9I	TTAA	4 cut(s)	548, 621, 1077, 1383
TscAI	CASTG	2 cut(s)	143, 964
TseFI	GTSAC	2 cut(s)	241, 333
TseI	GCWGC	3 cut(s)	539, 613, 830
Tsp45I	GTSAC	2 cut(s)	241, 333
TspDTI	ATGAA	4 cut(s)	210, 318, 654, 1179
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	143, 964
Vha464I	CTTAAG	1 cut(s)	620
XapI	RAATTY	3 cut(s)	53, 218, 1028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1347
XmiI	GTMKAC	1 cut(s)	919
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.