Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8303027.1

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 753

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8303027.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 385 bp

atgatgaatcaggcgactttaggtctcggcgactcaaaggggaggagcatagttcagtgctccgttggagataagagtcctatctttttgtgttctttggtacctaagaagaatgaatcgtgtcccttgaatcttgaatttgaggaggatggtgagttggtgaccttttcggtcattggcaaacaaagcgtccatctctctggctactttgagacttatgatgaaggagaagctgttggagaaggatatgagtcagattcgtctgaggaggatattggtgagtctgggtcacaggagtcatcagattatggtagtgatgaccaatatgagctaattgatagtgatcttgacatggaccggtcttcacctcctaccaaaagtggag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

128

Amino Acids

13.81

Weight (kDa)

4.05

Isoelectric Point (pI)

53.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	137
AfaI	GTAC	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	357
AgsI	TTSAA	2 cut(s)	130, 137
AhdI	GACNNNNNGTC	1 cut(s)	21
AluBI	AGCT	2 cut(s)	233, 331
AluI	AGCT	2 cut(s)	233, 331
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	2 cut(s)	29, 206
ApoI	RAATTY	1 cut(s)	137
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AsiGI	ACCGGT	1 cut(s)	357
Asp718I	GGTACC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	4 cut(s)	164, 172, 290, 357
AvaII	GGWCC	1 cut(s)	355
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	2 cut(s)	143, 201
BcoDI	GTCTC	2 cut(s)	29, 206
Bme18I	GGWCC	1 cut(s)	355
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	354
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	357
BsaXI	ACNNNNNCTCC	2 cut(s)	219, 249
Bse118I	RCCGGY	1 cut(s)	357
Bse8I	GATNNNNATC	1 cut(s)	342
BseGI	GGATG	1 cut(s)	154
BseJI	GATNNNNATC	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	255
BseRI	GAGGAG	3 cut(s)	58, 158, 281
BshNI	GGYRCC	1 cut(s)	100
BshTI	ACCGGT	1 cut(s)	357
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	29, 206
BsmFI	GGGAC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	343
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	102
BspT107I	GGYRCC	1 cut(s)	100
BspTNI	GGTCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	357
BssAI	RCCGGY	1 cut(s)	357
BssMI	GATC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	105, 264
BstEII	GGTNACC	1 cut(s)	160
BstF5I	GGATG	1 cut(s)	154
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	29, 206
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	186
BstPI	GGTNACC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	354
BstXI	CCANNNNNNTGG	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	154
BtsIMutI	CAGTG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	357
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	101
CspAI	ACCGGT	1 cut(s)	357
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	3 cut(s)	204, 233, 331
CviKI_1	RGCY	3 cut(s)	204, 233, 331
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	2 cut(s)	105, 264
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	355
Eco91I	GGTNACC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	160
FaeI	CATG	1 cut(s)	355
FaiI	YATR	6 cut(s)	50, 219, 249, 309, 327, 353
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	1 cut(s)	351
FokI	GGATG	1 cut(s)	161
HapII	CCGG	1 cut(s)	358
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	9 cut(s)	7, 32, 76, 116, 130, 251, 257, 281, 296
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	4 cut(s)	164, 172, 290, 357
Hpy188I	TCNGA	3 cut(s)	256, 265, 304
Hpy188III	TCNNGA	2 cut(s)	134, 347
HpyAV	CCTTC	2 cut(s)	218, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	186
HpyF3I	CTNAG	2 cut(s)	105, 264
Hsp92II	CATG	1 cut(s)	355
KpnI	GGTACC	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	45, 65
LpnPI	CCDG	4 cut(s)	186, 270, 278, 371
MaeIII	GTNAC	2 cut(s)	160, 288
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	2 cut(s)	121, 354
MhlI	GDGCHC	1 cut(s)	62
MluCI	AATT	2 cut(s)	137, 333
MlyI	GAGTC	5 cut(s)	26, 85, 260, 290, 305
MmeI	TCCRAC	2 cut(s)	46, 217
MnlI	CCTC	6 cut(s)	36, 136, 139, 259, 262, 378
MspI	CCGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	186
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	1 cut(s)	102
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	160, 288
PfeI	GAWTC	4 cut(s)	7, 116, 130, 257
PinAI	ACCGGT	1 cut(s)	357
PleI	GAGTC	5 cut(s)	26, 84, 259, 289, 304
PpsI	GAGTC	5 cut(s)	26, 84, 259, 289, 304
PspEI	GGTNACC	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	355
SchI	GAGTC	5 cut(s)	26, 85, 260, 290, 305
SduI	GDGCHC	1 cut(s)	62
SetI	ASST	6 cut(s)	25, 106, 167, 235, 333, 370
SinI	GGWCC	1 cut(s)	355
Sse9I	AATT	2 cut(s)	137, 333
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	2 cut(s)	137, 333
TfiI	GAWTC	4 cut(s)	7, 116, 130, 257
TscAI	CASTG	1 cut(s)	62
TseFI	GTSAC	2 cut(s)	160, 288
Tsp45I	GTSAC	2 cut(s)	160, 288
TspDTI	ATGAA	3 cut(s)	20, 129, 237
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.