Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

62630142 .. 62634106

Gene Structure 3965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG398700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGGCGGCTTTTGGGGAATTGAAGTAAAACCTGGGAAACAGTATCCTATTGAATTTCCTGAAGATGAGGAAGCAAGGCTTAGGATTACTCAGGCGACTTTAGGTCTCGGCGACTCAAAGGGGAGGAGCATAGTTCAGTGTTCCGTTGGAGATAAGAGTCCTATCTTTTTGTGTTCTTTGGTACCTAAGAAGAATGAATCGTGTCCCTTGAATCTTGAATTTGAGGAGGATGGTGAGTTGGTGACCTTTTCGGTCATTGGCAAACAAAGCGTCCATCTCTCTGGCTACTTTGAGACTTATGATGAAGGCGAAGCTGTTGGAGAAGGATATGAGTCAGATTCGTATGAGGAGGATATTGGTGAGTCTGGGTCACAGGAGTCATCAGATTATGGTAGTGATGACCAATATGAGCTAATTGATAGTGATCTTGACATGGACCGGTCTTCACCTCCTACCAAAAGTGGAGTTATAATTGAGGAGATTGAGGACGATGACAAGCCCACTAATGGAAAGGGTCAATCTAAACCTCTACTTGAATTCAATCAGTCAAATGGCTCTGAGGACAATACAAAAGGTGCAGGTGTCCCTGTTTTGGAAAGTGAAGATGACGATGGCTTTCCAATATCCACGAAAAACAAAACCAATATTGAGAAGCCTGAATCAGCAACAGGACACAGAGATAAAGTAACTGAGAAAACCAAGAAGAGGAAAGCAAAAGATGGTGATGATGCTGCTGGATTAAAAAGGAAGGTTGAAAATATTGACCAAGATCATCAAGAAGGGCAAAAGAAGAGTAAGAAAAAGCAGCAACTTAAGGATGGAAGTACTGATGAAAAGGAAAAGCAACCTGAGGTCTTGAAGAGCAAAAATGAGCATGGACAACTGCTATCTAATAAGAAGAGCCCTGACCACATCAAAATGGACTCTGTTCCTGTTCCTACTGAGAATCAGACAGGAGAGAAAAAGAAGAAGAACAAGAACAAGAAGAAATCCCAGGAGACTGAAGAAAAAACTAATATGGAAAAAAGCAATGGCAAGTCATCATCTAAAGTGAGAACCTTTCCAAATGGATTGGTTATCGAGGAGGTTTCTATGGGTCGACCAGATGGCAAAAGAGCTGATCCGGGAAAGAAGGTCAGTGTTCGCTACATTGGGAAGCTAAAGAATGGGAAACAATTTGACGCAAATGTTATAGGGCCACCGTTCAAATTCACATTAGGTACCAATGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

411

Amino Acids

45.34

Weight (kDa)

5.26

Isoelectric Point (pI)

51.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	4 - 97	1.9e-26	Nucleoplasmin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
Acc65I	GGTACC	2 cut(s)	181, 1220
AccB1I	GGYRCC	2 cut(s)	181, 1220
AccI	GTMKAC	1 cut(s)	1099
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	1115
AcsI	RAATTY	4 cut(s)	53, 218, 536, 1208
AcuI	CTGAAG	2 cut(s)	81, 1023
AfaI	GTAC	3 cut(s)	183, 826, 1222
AfiI	CCNNNNNNNGG	3 cut(s)	506, 592, 705
AflII	CTTAAG	1 cut(s)	812
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	9 cut(s)	23, 53, 211, 218, 536, 541, 755, 859, 1207
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	2 cut(s)	31, 993
AluBI	AGCT	4 cut(s)	314, 412, 1118, 1159
AluI	AGCT	4 cut(s)	314, 412, 1118, 1159
Alw26I	GTCTC	3 cut(s)	110, 287, 992
AlwI	GGATC	1 cut(s)	1115
AoxI	GGCC	1 cut(s)	1196
ApeKI	GCWGC	2 cut(s)	731, 805
ApoI	RAATTY	4 cut(s)	53, 218, 536, 1208
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
AsiGI	ACCGGT	1 cut(s)	438
Asp718I	GGTACC	2 cut(s)	181, 1220
AspS9I	GGNCC	2 cut(s)	436, 1196
AsuC2I	CCSGG	1 cut(s)	1125
AsuHPI	GGTGA	5 cut(s)	245, 253, 371, 438, 734
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	849
BaeI	ACNNNNGTAYC	1 cut(s)	1212
BanI	GGYRCC	2 cut(s)	181, 1220
BanII	GRGCYC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	435
BbvI	GCAGC	2 cut(s)	718, 817
BccI	CCATC	6 cut(s)	224, 282, 605, 713, 812, 1100
BciT130I	CCWGG	2 cut(s)	33, 995
BciVI	GTATCC	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	1125
BcoDI	GTCTC	3 cut(s)	110, 287, 992
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	1 cut(s)	54
BisI	GCNGC	3 cut(s)	7, 732, 806
BlsI	GCNGC	3 cut(s)	8, 733, 807
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	33, 995, 1125
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	436, 1196
BmiI	GGNNCC	2 cut(s)	183, 1222
BmrFI	CCNGG	3 cut(s)	33, 995, 1125
BmsI	GCATC	1 cut(s)	718
BpiI	GAAGAC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	1125
BsaBI	GATNNNNATC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	32, 993
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	3 cut(s)	506, 592, 705
Bse118I	RCCGGY	1 cut(s)	438
Bse21I	CCTNAGG	1 cut(s)	849
Bse3DI	GCAATG	1 cut(s)	1036
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	33, 995
BseDI	CCNNGG	2 cut(s)	32, 993
BseGI	GGATG	2 cut(s)	235, 823
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	3 cut(s)	506, 592, 705
BseMI	GCAATG	1 cut(s)	1036
BseMII	CTCAG	5 cut(s)	104, 549, 681, 840, 933
BseRI	GAGGAG	5 cut(s)	139, 239, 362, 491, 1097
BseXI	GCAGC	2 cut(s)	718, 817
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	1 cut(s)	1198
BshNI	GGYRCC	2 cut(s)	181, 1220
BshTI	ACCGGT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	439, 1124
BslFI	GGGAC	2 cut(s)	189, 569
BslI	CCNNNNNNNGG	3 cut(s)	506, 592, 705
BsmAI	GTCTC	3 cut(s)	110, 287, 992
BsmFI	GGGAC	2 cut(s)	189, 569
BsnI	GGCC	1 cut(s)	1198
Bso31I	GGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	3 cut(s)	424, 769, 1120
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	1198
BspCNI	CTCAG	5 cut(s)	103, 550, 682, 841, 934
BspLI	GGNNCC	2 cut(s)	183, 1222
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	1115
BspQI	GCTCTTC	2 cut(s)	854, 893
BspT107I	GGYRCC	2 cut(s)	181, 1220
BspTI	CTTAAG	1 cut(s)	812
BspTNI	GGTCTC	1 cut(s)	110
BsrDI	GCAATG	1 cut(s)	1036
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	2 cut(s)	32, 993
BssMI	GATC	3 cut(s)	424, 769, 1120
Bst2UI	CCWGG	2 cut(s)	33, 995
Bst4CI	ACNGT	2 cut(s)	42, 1203
Bst6I	CTCTTC	4 cut(s)	698, 785, 854, 893
BstAFI	CTTAAG	1 cut(s)	812
BstDEI	CTNAG	7 cut(s)	80, 90, 186, 558, 690, 849, 942
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	235, 823
BstKTI	GATC	3 cut(s)	427, 772, 1123
BstMAI	GTCTC	3 cut(s)	110, 287, 992
BstMBI	GATC	3 cut(s)	424, 769, 1120
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	2 cut(s)	33, 995
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	3 cut(s)	31, 993, 1123
BstV1I	GCAGC	2 cut(s)	718, 817
BstV2I	GAAGAC	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	281
Bsu36I	CCTNAGG	1 cut(s)	849
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	1198
BtsCI	GGATG	2 cut(s)	235, 823
BtsIMutI	CAGTG	2 cut(s)	143, 1144
BveI	ACCTGC	1 cut(s)	569
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	436, 1196
CseI	GACGC	2 cut(s)	259, 1190
Csp6I	GTAC	3 cut(s)	182, 825, 1221
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	2 cut(s)	433, 875
CviQI	GTAC	3 cut(s)	182, 825, 1221
DdeI	CTNAG	7 cut(s)	80, 90, 186, 558, 690, 849, 942
DpnI	GATC	3 cut(s)	426, 771, 1122
DpnII	GATC	3 cut(s)	424, 769, 1120
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	4 cut(s)	698, 785, 854, 893
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	4 cut(s)	698, 785, 854, 893
Eco24I	GRGCYC	1 cut(s)	905
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	81, 1023
Eco81I	CCTNAGG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	2 cut(s)	31, 993
EcoT38I	GRGCYC	1 cut(s)	905
FaeI	CATG	2 cut(s)	436, 878
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	2 cut(s)	189, 569
FatI	CATG	2 cut(s)	432, 874
FblI	GTMKAC	1 cut(s)	1099
Fnu4HI	GCNGC	3 cut(s)	7, 732, 806
FokI	GGATG	2 cut(s)	242, 830
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	3 cut(s)	7, 732, 806
GluI	GCNGC	3 cut(s)	7, 732, 806
HaeIII	GGCC	1 cut(s)	1198
HapII	CCGG	2 cut(s)	439, 1124
HgaI	GACGC	2 cut(s)	259, 1190
Hin1II	CATG	2 cut(s)	436, 878
HincII	GTYRAC	1 cut(s)	1100
HindII	GTYRAC	1 cut(s)	1100
HpaII	CCGG	2 cut(s)	439, 1124
HphI	GGTGA	5 cut(s)	245, 253, 371, 438, 734
Hpy166II	GTNNAC	1 cut(s)	1100
Hpy188I	TCNGA	5 cut(s)	337, 385, 559, 951, 1235
Hpy188III	TCNNGA	5 cut(s)	59, 215, 428, 776, 856
Hpy8I	GTNNAC	1 cut(s)	1100
HpyAV	CCTTC	5 cut(s)	299, 317, 742, 773, 1126
HpyCH4III	ACNGT	2 cut(s)	42, 1203
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	7 cut(s)	80, 90, 186, 558, 690, 849, 942
Hsp92II	CATG	2 cut(s)	436, 878
KpnI	GGTACC	2 cut(s)	185, 1224
Kzo9I	GATC	3 cut(s)	424, 769, 1120
LguI	GCTCTTC	2 cut(s)	854, 893
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	2 cut(s)	718, 817
LweI	GCATC	1 cut(s)	718
MaeIII	GTNAC	3 cut(s)	241, 369, 685
MalI	GATC	3 cut(s)	426, 771, 1122
MboI	GATC	3 cut(s)	424, 769, 1120
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	8 cut(s)	18, 53, 218, 414, 471, 536, 1175, 1208
MlyI	GAGTC	6 cut(s)	107, 166, 341, 371, 386, 917
MmeI	TCCRAC	2 cut(s)	127, 298
MseI	TTAA	2 cut(s)	740, 813
MslI	CAYNNNNRTG	1 cut(s)	917
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	439, 1124
MspR9I	CCNGG	3 cut(s)	33, 995, 1125
MvaI	CCWGG	2 cut(s)	33, 995
MwoI	GCNNNNNNNGC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	1125
NdeII	GATC	3 cut(s)	424, 769, 1120
NlaIII	CATG	2 cut(s)	436, 878
NlaIV	GGNNCC	2 cut(s)	183, 1222
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	2 cut(s)	241, 369
PaqCI	CACCTGC	1 cut(s)	569
PciSI	GCTCTTC	2 cut(s)	854, 893
PfeI	GAWTC	5 cut(s)	197, 211, 338, 659, 946
PfoI	TCCNGGA	1 cut(s)	1123
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	8, 733, 807
PleI	GAGTC	6 cut(s)	107, 165, 340, 370, 385, 917
PpsI	GAGTC	6 cut(s)	107, 165, 340, 370, 385, 917
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	31, 993
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	2 cut(s)	31, 993
PspN4I	GGNNCC	2 cut(s)	183, 1222
PspPI	GGNCC	2 cut(s)	436, 1196
RsaI	GTAC	3 cut(s)	183, 826, 1222
RsaNI	GTAC	3 cut(s)	182, 825, 1221
RseI	CAYNNNNRTG	1 cut(s)	917
SalI	GTCGAC	1 cut(s)	1098
SapI	GCTCTTC	2 cut(s)	854, 893
SaqAI	TTAA	2 cut(s)	740, 813
SatI	GCNGC	3 cut(s)	7, 732, 806
Sau3AI	GATC	3 cut(s)	424, 769, 1120
Sau96I	GGNCC	2 cut(s)	436, 1196
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	6 cut(s)	107, 166, 341, 371, 386, 917
ScrFI	CCNGG	3 cut(s)	33, 995, 1125
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	1 cut(s)	718
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	917
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	8 cut(s)	18, 53, 218, 414, 471, 536, 1175, 1208
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	2 cut(s)	646, 760
StyD4I	CCNGG	3 cut(s)	31, 993, 1123
TaaI	ACNGT	2 cut(s)	42, 1203
TaqI	TCGA	2 cut(s)	1080, 1099
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	8 cut(s)	18, 53, 218, 414, 471, 536, 1175, 1208
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	5 cut(s)	197, 211, 338, 659, 946
Tru1I	TTAA	2 cut(s)	740, 813
Tru9I	TTAA	2 cut(s)	740, 813
TscAI	CASTG	2 cut(s)	143, 1144
TseFI	GTSAC	2 cut(s)	241, 369
TseI	GCWGC	2 cut(s)	731, 805
Tsp45I	GTSAC	2 cut(s)	241, 369
TspDTI	ATGAA	3 cut(s)	210, 318, 846
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	143, 1144
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	4 cut(s)	53, 218, 536, 1208
XmiI	GTMKAC	1 cut(s)	1099
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.