Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

49485341 .. 49489259

Gene Structure 3919 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG365800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGGAAGCAAGGCTTAGGATTACTCAGGTATATTTTTCACTTCAGATGCTCAAAATCAAATCCTAGTGTTTTGTTTTGGAGCATTTTGATTGTTTGGAGCTTTATGGAGTTGGATTGGGTGAAGTATAATGGTCAATTTGTTTGTTTACCTTGCATGATGAATCAGGCGACTTTAGGTCTTGGCGACTCAAAGGGGAGGAGCATAGTTCAGTGTTCCGTTGGAGATAAGAGTCCTATCTTTTTGTGTTCTTTGGTACCTAAGAAGAACGAATCGTGTCCCTTGAATCTTGAATTTGAGGAGGATGAGGAGTTGGTGACCTTTTCGGTCATTGGCAAACAAAGTGTCCATCTCTCTGGCTACTTTGAGACTTATGATGAAGGCGAAGCTGTTGGAGAAGGATATGAGTCAGATTCGTATGAGGAGGATATTGGTGAGTCTGGGTCGGAGGAGTCATCAGATATTGGTAGTGATGACCAATATGAGCTAATTGATAGTGATCTTGACATGGACCGGTCTTCACCTCCTACCAAAAATGGAGTTATAATTGAGGAGATTGAGGACGATGACAAGCCCACTAATGGAAAGGGCCAATCTAAACCTCTACTTGAATTCAATCAATCAAATGGCTCTGAGGACAATACAAAAGGTGCAGGTGTCCCTGTTTTGGAAAGTGAAGATGACGATGGCTTTCCAATATCCACGAAAAACAAAACCAATATTGAGAAGCCTGAATCAGCAACAGGACACAGAGATAAAGTAACTGAGAAAACCAAGAAGAGGAAAGCAAAAGATGGTGATGATGCTGCTGGATTAAAAAGGAAGGTTGAAAATATTGACCAAGATCATCAAGAAGGGCAAAAGAAGAGTAAGAAAAAGCAGCAACTTAAGGATGGAAGTACTGATGAAAAGGAAAAGCAACCTGAGGTCTTGAAGAGCAAAAATGAGCATGGACAACTGCTATCTAATAAGAAGAGCCCTGACATCAAAATGGACTCTGTTCCTACTGATAATCAGACAGAGGAGAAAAAAAAGAAGAAGAACAAGAAGAAATCCCAGGAGACTGAAGAAAAAACTAATGCTGATCAAACTGCTGCTAATATGGAAAAAACCAATGGCAAGTCATCATCTAAAGTGAGAACCTTTCCAAATGGATTGGTTATCGAGGAGGTTTCTATGGGTCGACCAGATGGCAAAAGAGCTGATCCGGGAAAGAAGGTCAGTGTTCGCTATATTGGGAAGCTAAAGAATGGGAAACAATTTGACGCAAATGTTAGAGGGCCACCGTTCAAATTCACATTAGGTACCAATGTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

439

Amino Acids

48.87

Weight (kDa)

5.45

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	55 - 122	5.1e-16	Nucleoplasmin-like domain
FKBP_C	PF00254	399 - 437	3.9e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	545
AarI	CACCTGC	1 cut(s)	644
Acc36I	ACCTGC	1 cut(s)	644
Acc65I	GGTACC	2 cut(s)	256, 1304
AccB1I	GGYRCC	2 cut(s)	256, 1304
AccI	GTMKAC	1 cut(s)	1183
AclWI	GGATC	1 cut(s)	1199
AcsI	RAATTY	3 cut(s)	293, 611, 1292
AcuI	CTGAAG	2 cut(s)	28, 1086
AfaI	GTAC	3 cut(s)	258, 901, 1306
AfiI	CCNNNNNNNGG	3 cut(s)	581, 667, 780
AflII	CTTAAG	1 cut(s)	887
AgeI	ACCGGT	1 cut(s)	513
AgsI	TTSAA	7 cut(s)	286, 293, 611, 616, 830, 934, 1291
AhdI	GACNNNNNGTC	1 cut(s)	177
AjnI	CCWGG	1 cut(s)	1056
AluBI	AGCT	5 cut(s)	102, 389, 487, 1202, 1243
AluI	AGCT	5 cut(s)	102, 389, 487, 1202, 1243
Alw26I	GTCTC	2 cut(s)	362, 1055
AlwI	GGATC	1 cut(s)	1199
AoxI	GGCC	2 cut(s)	589, 1280
ApeKI	GCWGC	3 cut(s)	806, 880, 1094
ApoI	RAATTY	3 cut(s)	293, 611, 1292
ArsI	GACNNNNNNTTYG	2 cut(s)	330, 362
AsiGI	ACCGGT	1 cut(s)	513
Asp718I	GGTACC	2 cut(s)	256, 1304
AspS9I	GGNCC	3 cut(s)	511, 589, 1280
AsuC2I	CCSGG	1 cut(s)	1209
AsuHPI	GGTGA	5 cut(s)	133, 328, 446, 513, 809
AvaII	GGWCC	1 cut(s)	511
AxyI	CCTNAGG	1 cut(s)	924
BaeI	ACNNNNGTAYC	1 cut(s)	1296
BanI	GGYRCC	2 cut(s)	256, 1304
BanII	GRGCYC	1 cut(s)	980
BbsI	GAAGAC	1 cut(s)	510
BbvI	GCAGC	3 cut(s)	793, 892, 1081
BccI	CCATC	5 cut(s)	357, 680, 788, 887, 1184
BciT130I	CCWGG	1 cut(s)	1058
BclI	TGATCA	1 cut(s)	1084
BcnI	CCSGG	1 cut(s)	1209
BcoDI	GTCTC	2 cut(s)	362, 1055
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	887
BfuAI	ACCTGC	1 cut(s)	644
BisI	GCNGC	3 cut(s)	807, 881, 1095
BlsI	GCNGC	3 cut(s)	808, 882, 1096
BmcAI	AGTACT	1 cut(s)	901
Bme1390I	CCNGG	2 cut(s)	1058, 1209
Bme18I	GGWCC	1 cut(s)	511
BmeRI	GACNNNNNGTC	1 cut(s)	177
BmgT120I	GGNCC	3 cut(s)	511, 589, 1280
BmiI	GGNNCC	2 cut(s)	258, 1306
BmrFI	CCNGG	2 cut(s)	1058, 1209
BmsI	GCATC	2 cut(s)	38, 793
BpiI	GAAGAC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	1209
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	1056
BsaWI	WCCGGW	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	3 cut(s)	581, 667, 780
Bse118I	RCCGGY	1 cut(s)	513
Bse21I	CCTNAGG	1 cut(s)	924
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	1058
BseDI	CCNNGG	1 cut(s)	1056
BseGI	GGATG	2 cut(s)	310, 898
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	3 cut(s)	581, 667, 780
BseMII	CTCAG	4 cut(s)	40, 624, 756, 915
BseRI	GAGGAG	8 cut(s)	214, 314, 323, 437, 464, 566, 1037, 1181
BseXI	GCAGC	3 cut(s)	793, 892, 1081
BsgI	GTGCAG	1 cut(s)	672
BshFI	GGCC	2 cut(s)	591, 1282
BshNI	GGYRCC	2 cut(s)	256, 1304
BshTI	ACCGGT	1 cut(s)	513
BsiSI	CCGG	2 cut(s)	514, 1208
BslFI	GGGAC	2 cut(s)	264, 644
BslI	CCNNNNNNNGG	3 cut(s)	581, 667, 780
BsmAI	GTCTC	2 cut(s)	362, 1055
BsmFI	GGGAC	2 cut(s)	264, 644
BsnI	GGCC	2 cut(s)	591, 1282
Bsp1286I	GDGCHC	1 cut(s)	980
Bsp143I	GATC	4 cut(s)	499, 844, 1084, 1204
BspANI	GGCC	2 cut(s)	591, 1282
BspCNI	CTCAG	4 cut(s)	39, 625, 757, 916
BspLI	GGNNCC	2 cut(s)	258, 1306
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	1199
BspQI	GCTCTTC	2 cut(s)	929, 968
BspT107I	GGYRCC	2 cut(s)	256, 1304
BspTI	CTTAAG	1 cut(s)	887
BsrFI	RCCGGY	1 cut(s)	513
BssAI	RCCGGY	1 cut(s)	513
BssECI	CCNNGG	1 cut(s)	1056
BssMI	GATC	4 cut(s)	499, 844, 1084, 1204
Bst2UI	CCWGG	1 cut(s)	1058
Bst4CI	ACNGT	1 cut(s)	1287
Bst6I	CTCTTC	4 cut(s)	773, 860, 929, 968
BstAFI	CTTAAG	1 cut(s)	887
BstDEI	CTNAG	6 cut(s)	16, 26, 261, 633, 765, 924
BstEII	GGTNACC	1 cut(s)	316
BstF5I	GGATG	2 cut(s)	310, 898
BstKTI	GATC	4 cut(s)	502, 847, 1087, 1207
BstMAI	GTCTC	2 cut(s)	362, 1055
BstMBI	GATC	4 cut(s)	499, 844, 1084, 1204
BstNI	CCWGG	1 cut(s)	1058
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	2 cut(s)	1056, 1207
BstV1I	GCAGC	3 cut(s)	793, 892, 1081
BstV2I	GAAGAC	1 cut(s)	510
BstXI	CCANNNNNNTGG	1 cut(s)	356
Bsu36I	CCTNAGG	1 cut(s)	924
BsuRI	GGCC	2 cut(s)	591, 1282
BtsCI	GGATG	2 cut(s)	310, 898
BtsIMutI	CAGTG	2 cut(s)	218, 1228
BveI	ACCTGC	1 cut(s)	644
Cfr10I	RCCGGY	1 cut(s)	513
Cfr13I	GGNCC	3 cut(s)	511, 589, 1280
CseI	GACGC	1 cut(s)	1274
Csp6I	GTAC	3 cut(s)	257, 900, 1305
CspAI	ACCGGT	1 cut(s)	513
CviAII	CATG	3 cut(s)	157, 508, 950
CviQI	GTAC	3 cut(s)	257, 900, 1305
DdeI	CTNAG	6 cut(s)	16, 26, 261, 633, 765, 924
DpnI	GATC	4 cut(s)	501, 846, 1086, 1206
DpnII	GATC	4 cut(s)	499, 844, 1084, 1204
DriI	GACNNNNNGTC	1 cut(s)	177
Eam1104I	CTCTTC	4 cut(s)	773, 860, 929, 968
Eam1105I	GACNNNNNGTC	1 cut(s)	177
EarI	CTCTTC	4 cut(s)	773, 860, 929, 968
Eco24I	GRGCYC	1 cut(s)	980
Eco47I	GGWCC	1 cut(s)	511
Eco57I	CTGAAG	2 cut(s)	28, 1086
Eco81I	CCTNAGG	1 cut(s)	924
Eco91I	GGTNACC	1 cut(s)	316
EcoO65I	GGTNACC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	611
EcoRII	CCWGG	1 cut(s)	1056
EcoT38I	GRGCYC	1 cut(s)	980
FaeI	CATG	3 cut(s)	160, 511, 953
FalI	AAGNNNNNCTT	1 cut(s)	31
FaqI	GGGAC	2 cut(s)	264, 644
FatI	CATG	3 cut(s)	156, 507, 949
FbaI	TGATCA	1 cut(s)	1084
FblI	GTMKAC	1 cut(s)	1183
Fnu4HI	GCNGC	3 cut(s)	807, 881, 1095
FokI	GGATG	2 cut(s)	317, 905
FriOI	GRGCYC	1 cut(s)	980
Fsp4HI	GCNGC	3 cut(s)	807, 881, 1095
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	3 cut(s)	807, 881, 1095
HaeIII	GGCC	2 cut(s)	591, 1282
HapII	CCGG	2 cut(s)	514, 1208
HgaI	GACGC	1 cut(s)	1274
Hin1II	CATG	3 cut(s)	160, 511, 953
HincII	GTYRAC	1 cut(s)	1184
HindII	GTYRAC	1 cut(s)	1184
HpaII	CCGG	2 cut(s)	514, 1208
HphI	GGTGA	5 cut(s)	133, 328, 446, 513, 809
Hpy166II	GTNNAC	2 cut(s)	149, 1184
Hpy188I	TCNGA	7 cut(s)	47, 412, 448, 460, 634, 1017, 1319
Hpy188III	TCNNGA	4 cut(s)	290, 503, 851, 931
Hpy8I	GTNNAC	2 cut(s)	149, 1184
HpyAV	CCTTC	5 cut(s)	374, 392, 817, 848, 1210
HpyCH4III	ACNGT	1 cut(s)	1287
HpyCH4V	TGCA	2 cut(s)	156, 653
HpyF3I	CTNAG	6 cut(s)	16, 26, 261, 633, 765, 924
Hsp92II	CATG	3 cut(s)	160, 511, 953
KpnI	GGTACC	2 cut(s)	260, 1308
Ksp22I	TGATCA	1 cut(s)	1084
Kzo9I	GATC	4 cut(s)	499, 844, 1084, 1204
LguI	GCTCTTC	2 cut(s)	929, 968
LmnI	GCTCC	3 cut(s)	81, 99, 201
Lsp1109I	GCAGC	3 cut(s)	793, 892, 1081
LweI	GCATC	2 cut(s)	38, 793
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	316, 760
MalI	GATC	4 cut(s)	501, 846, 1086, 1206
MboI	GATC	4 cut(s)	499, 844, 1084, 1204
MhlI	GDGCHC	1 cut(s)	980
MluCI	AATT	7 cut(s)	137, 293, 489, 546, 611, 1259, 1292
MlyI	GAGTC	6 cut(s)	182, 241, 416, 446, 461, 989
MmeI	TCCRAC	4 cut(s)	93, 202, 373, 426
MseI	TTAA	2 cut(s)	815, 888
MslI	CAYNNNNRTG	1 cut(s)	989
MspCI	CTTAAG	1 cut(s)	887
MspI	CCGG	2 cut(s)	514, 1208
MspR9I	CCNGG	2 cut(s)	1058, 1209
MvaI	CCWGG	1 cut(s)	1058
NciI	CCSGG	1 cut(s)	1209
NdeII	GATC	4 cut(s)	499, 844, 1084, 1204
NlaIII	CATG	3 cut(s)	160, 511, 953
NlaIV	GGNNCC	2 cut(s)	258, 1306
NmuCI	GTSAC	1 cut(s)	316
PaqCI	CACCTGC	1 cut(s)	644
PciSI	GCTCTTC	2 cut(s)	929, 968
PfeI	GAWTC	5 cut(s)	163, 272, 286, 413, 734
PfoI	TCCNGGA	1 cut(s)	1207
PinAI	ACCGGT	1 cut(s)	513
PkrI	GCNGC	3 cut(s)	808, 882, 1096
PleI	GAGTC	6 cut(s)	182, 240, 415, 445, 460, 989
PpsI	GAGTC	6 cut(s)	182, 240, 415, 445, 460, 989
PsiI	TTATAA	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	1056
PspEI	GGTNACC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	1056
PspN4I	GGNNCC	2 cut(s)	258, 1306
PspPI	GGNCC	3 cut(s)	511, 589, 1280
RsaI	GTAC	3 cut(s)	258, 901, 1306
RsaNI	GTAC	3 cut(s)	257, 900, 1305
RseI	CAYNNNNRTG	1 cut(s)	989
SalI	GTCGAC	1 cut(s)	1182
SapI	GCTCTTC	2 cut(s)	929, 968
SaqAI	TTAA	2 cut(s)	815, 888
SatI	GCNGC	3 cut(s)	807, 881, 1095
Sau3AI	GATC	4 cut(s)	499, 844, 1084, 1204
Sau96I	GGNCC	3 cut(s)	511, 589, 1280
ScaI	AGTACT	1 cut(s)	901
SchI	GAGTC	6 cut(s)	182, 241, 416, 446, 461, 989
ScrFI	CCNGG	2 cut(s)	1058, 1209
SduI	GDGCHC	1 cut(s)	980
SfaNI	GCATC	2 cut(s)	38, 793
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	989
SmlI	CTYRAG	1 cut(s)	887
SmoI	CTYRAG	1 cut(s)	887
Sse9I	AATT	7 cut(s)	137, 293, 489, 546, 611, 1259, 1292
SspI	AATATT	2 cut(s)	721, 835
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	1056, 1207
TaaI	ACNGT	1 cut(s)	1287
TaqI	TCGA	2 cut(s)	1164, 1183
TaqII	GACCGA	1 cut(s)	316
TasI	AATT	7 cut(s)	137, 293, 489, 546, 611, 1259, 1292
TatI	WGTACW	1 cut(s)	899
TfiI	GAWTC	5 cut(s)	163, 272, 286, 413, 734
Tru1I	TTAA	2 cut(s)	815, 888
Tru9I	TTAA	2 cut(s)	815, 888
TscAI	CASTG	2 cut(s)	218, 1228
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	3 cut(s)	806, 880, 1094
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	176, 393, 921
TspGWI	ACGGA	1 cut(s)	208
TspRI	CASTG	2 cut(s)	218, 1228
Vha464I	CTTAAG	1 cut(s)	887
VpaK11BI	GGWCC	1 cut(s)	511
XapI	RAATTY	3 cut(s)	293, 611, 1292
XmiI	GTMKAC	1 cut(s)	1183
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.