Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

5044398 .. 5047839

Gene Structure 3442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026689

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGGCGGCTTTTGGGGAATTGAAGTGAAACCAGGGAAACAGTATCCTATTGAATTTCCAGAAGATGAGGAAGCAAGGCTTAGGATTACTCAGGCGACTTTAGGTCTTGGCGACTCAAAGGGGAGGAGCATAGTTCAGTGTTCAGTTGGAGATAAGAGTCCTATCTTTTTGTGTTCTTTGGTACCTAAGAAGAACGAATCGTGTCCTTTGAATCTTGAATTTGAGGAGGATGATGAGTTGGTGACCTTTTCGGTCATTGGCAAACAAAGCATCCATCTCTCTGGCTACTTTGAGACTTATGATGAAGGCGAAGCTGTTGGAGAAGGATATGAGTCAGATTCGTATGAGGAGGATATTGGTGAGTCTGGGTCGCAGGAGTCATCAGATTATGGTAGTGATGACCAATATGAGCTAATTGATAGTGATCTTGACATGGACCGGTCTTCACCTCCTACCAAAAGTGGAGTTATAATTGAGGAGATTGAGGACGATGACAAGCCCACTAATGGAAAGGGTCAATCTAAACCTCTACTTGAATTCAATCAATCAAATGGCTCTGAGGACAATACAAAAGGTGCAGGTGTCCCTGTTTTGGAAAGTGAAGATGACGATGGCTTTCCAATATCCACGAAAAACAAAACCAATATTGAGAAGCCTGAATCAGCAACAGGACACAGAGATAGAGTAACTGAGAAAACCAAGAAGAGGAAAGCAAAAGATGGTGATGATGCTGCTGGATTAAAAAGGAAGGTTGAAAATATTGACCAAGATCATCAAGAAGGGCAAAAGAAGAGTAAGAAAAAGCAGCAACTTAAGGATGTAAGTACTGATGAAAAGGAAAAGCAACCTGAGGTCTTGAAGAGCAAAAATGAGCATGGACAACTGCTATCTAATAAGAAGAGCCCTGACATCAAAATGGACTCTGTTCCTACTGAGAATCAGACAGAGGAGAAAAAAAAAAAGAAGAAGAACAAGAAGAAATCCCAGGAGACTGAAGAAAAAACTAATGCTGATCAAACTGCTGCTAATATGGAAAAAACCAATGGCAAGTCATCTAAAGTGAGAACCTTTCCAAATGGATTGGTTATCGAGGAGGTTTCTATGGGTCGACCAGATGGCAAAAGAGCTGATCCGGGAAAGAAGGTCAGTGTTCGCTACATTGGGAAGCTAAAGAATGGGAAACAATTTGACGCAAATGTTAGAGGGCCACCATTCCAATTCACATTAGGTGTAGGACAAGTTATATCGGGATGGGATGTTGGGGTTAAAGGTATGCGCGTTGGGGACAAAAGAAGACTCACCGTTCCACCATCAATGGGGTATGGACAGAGAGGTTCTCCCCCTGGGATACCACCAAACTCATGGCTTGTGTTTGATGTCGAGTTGGTTGCTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

467

Amino Acids

51.41

Weight (kDa)

5.25

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	4 - 97	2.3e-26	Nucleoplasmin-like domain
FKBP_C	PF00254	374 - 463	4.8e-33	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	470
AarI	CACCTGC	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	569
Acc65I	GGTACC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	1108
AccII	CGCG	1 cut(s)	1278
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	1124
AcsI	RAATTY	3 cut(s)	53, 218, 536
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	2 cut(s)	183, 826
AfiI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1316
AflII	CTTAAG	1 cut(s)	812
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	8 cut(s)	23, 53, 211, 218, 536, 541, 755, 859
AhdI	GACNNNNNGTC	1 cut(s)	102
AjnI	CCWGG	3 cut(s)	31, 984, 1342
AluBI	AGCT	4 cut(s)	314, 412, 1127, 1168
AluI	AGCT	4 cut(s)	314, 412, 1127, 1168
Alw26I	GTCTC	2 cut(s)	287, 983
AlwI	GGATC	1 cut(s)	1124
AoxI	GGCC	1 cut(s)	1205
ApeKI	GCWGC	3 cut(s)	731, 805, 1022
ApoI	RAATTY	3 cut(s)	53, 218, 536
AsiGI	ACCGGT	1 cut(s)	438
Asp718I	GGTACC	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	1278
AspS9I	GGNCC	2 cut(s)	436, 1205
AsuC2I	CCSGG	1 cut(s)	1134
AsuHPI	GGTGA	5 cut(s)	253, 371, 438, 734, 1291
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	849
BanI	GGYRCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	905
BbsI	GAAGAC	2 cut(s)	435, 1300
BbvI	GCAGC	3 cut(s)	718, 817, 1009
BccI	CCATC	6 cut(s)	282, 605, 713, 1109, 1245, 1318
BcgI	CGANNNNNNTGC	1 cut(s)	1370
BciT130I	CCWGG	3 cut(s)	33, 986, 1344
BciVI	GTATCC	2 cut(s)	54, 1341
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	1 cut(s)	1134
BcoDI	GTCTC	2 cut(s)	287, 983
BfrI	CTTAAG	1 cut(s)	812
BfuAI	ACCTGC	1 cut(s)	569
BfuI	GTATCC	2 cut(s)	54, 1341
BisI	GCNGC	4 cut(s)	7, 732, 806, 1023
BlsI	GCNGC	4 cut(s)	8, 733, 807, 1024
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	4 cut(s)	33, 986, 1134, 1344
Bme18I	GGWCC	1 cut(s)	436
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	2 cut(s)	436, 1205
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	4 cut(s)	33, 986, 1134, 1344
BmsI	GCATC	2 cut(s)	279, 718
BpiI	GAAGAC	2 cut(s)	435, 1300
BplI	GAGNNNNNCTC	2 cut(s)	1321, 1353
Bpu10I	CCTNAGC	1 cut(s)	80
BpuMI	CCSGG	1 cut(s)	1134
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	32, 984, 1342, 1343
BsaWI	WCCGGW	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1316
Bse118I	RCCGGY	1 cut(s)	438
Bse21I	CCTNAGG	1 cut(s)	849
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	3 cut(s)	33, 986, 1344
BseDI	CCNNGG	4 cut(s)	32, 984, 1342, 1343
BseGI	GGATG	5 cut(s)	235, 270, 823, 1256, 1261
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1316
BseMII	CTCAG	5 cut(s)	104, 549, 681, 840, 924
BseRI	GAGGAG	6 cut(s)	139, 239, 362, 491, 962, 1106
BseXI	GCAGC	3 cut(s)	718, 817, 1009
BsgI	GTGCAG	1 cut(s)	597
Bsh1236I	CGCG	1 cut(s)	1278
BshFI	GGCC	1 cut(s)	1207
BshNI	GGYRCC	1 cut(s)	181
BshTI	ACCGGT	1 cut(s)	438
BsiSI	CCGG	2 cut(s)	439, 1133
BslFI	GGGAC	2 cut(s)	569, 1298
BslI	CCNNNNNNNGG	4 cut(s)	506, 592, 705, 1316
BsmAI	GTCTC	2 cut(s)	287, 983
BsmFI	GGGAC	2 cut(s)	569, 1298
BsnI	GGCC	1 cut(s)	1207
Bsp1286I	GDGCHC	1 cut(s)	905
Bsp143I	GATC	4 cut(s)	424, 769, 1012, 1129
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	1 cut(s)	1207
BspCNI	CTCAG	5 cut(s)	103, 550, 682, 841, 925
BspFNI	CGCG	1 cut(s)	1278
BspLI	GGNNCC	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	569
BspPI	GGATC	1 cut(s)	1124
BspQI	GCTCTTC	2 cut(s)	854, 893
BspT107I	GGYRCC	1 cut(s)	181
BspTI	CTTAAG	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	438
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	4 cut(s)	32, 984, 1342, 1343
BssMI	GATC	4 cut(s)	424, 769, 1012, 1129
Bst2UI	CCWGG	3 cut(s)	33, 986, 1344
Bst4CI	ACNGT	2 cut(s)	42, 1303
Bst6I	CTCTTC	4 cut(s)	698, 785, 854, 893
BstAFI	CTTAAG	1 cut(s)	812
BstDEI	CTNAG	7 cut(s)	80, 90, 186, 558, 690, 849, 933
BstEII	GGTNACC	1 cut(s)	241
BstF5I	GGATG	5 cut(s)	235, 270, 823, 1256, 1261
BstFNI	CGCG	1 cut(s)	1278
BstHHI	GCGC	1 cut(s)	1278
BstKTI	GATC	4 cut(s)	427, 772, 1015, 1132
BstMAI	GTCTC	2 cut(s)	287, 983
BstMBI	GATC	4 cut(s)	424, 769, 1012, 1129
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	3 cut(s)	33, 986, 1344
BstPI	GGTNACC	1 cut(s)	241
BstSCI	CCNGG	4 cut(s)	31, 984, 1132, 1342
BstUI	CGCG	1 cut(s)	1278
BstV1I	GCAGC	3 cut(s)	718, 817, 1009
BstV2I	GAAGAC	2 cut(s)	435, 1300
BstXI	CCANNNNNNTGG	2 cut(s)	281, 1362
Bsu36I	CCTNAGG	1 cut(s)	849
BsuI	GTATCC	2 cut(s)	54, 1341
BsuRI	GGCC	1 cut(s)	1207
BtsCI	GGATG	5 cut(s)	235, 270, 823, 1256, 1261
BtsIMutI	CAGTG	2 cut(s)	143, 1153
BveI	ACCTGC	1 cut(s)	569
CfoI	GCGC	1 cut(s)	1278
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	436, 1205
CseI	GACGC	1 cut(s)	1199
Csp6I	GTAC	2 cut(s)	182, 825
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	3 cut(s)	433, 875, 1362
CviQI	GTAC	2 cut(s)	182, 825
DdeI	CTNAG	7 cut(s)	80, 90, 186, 558, 690, 849, 933
DpnI	GATC	4 cut(s)	426, 771, 1014, 1131
DpnII	GATC	4 cut(s)	424, 769, 1012, 1129
DriI	GACNNNNNGTC	1 cut(s)	102
Eam1104I	CTCTTC	4 cut(s)	698, 785, 854, 893
Eam1105I	GACNNNNNGTC	1 cut(s)	102
EarI	CTCTTC	4 cut(s)	698, 785, 854, 893
Eco24I	GRGCYC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	1014
Eco81I	CCTNAGG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	241
EcoO65I	GGTNACC	1 cut(s)	241
EcoRI	GAATTC	1 cut(s)	536
EcoRII	CCWGG	3 cut(s)	31, 984, 1342
EcoT38I	GRGCYC	1 cut(s)	905
FaeI	CATG	3 cut(s)	436, 878, 1365
FalI	AAGNNNNNCTT	2 cut(s)	63, 95
FaqI	GGGAC	2 cut(s)	569, 1298
FatI	CATG	3 cut(s)	432, 874, 1361
FbaI	TGATCA	1 cut(s)	1012
FblI	GTMKAC	1 cut(s)	1108
Fnu4HI	GCNGC	4 cut(s)	7, 732, 806, 1023
FokI	GGATG	5 cut(s)	242, 257, 830, 1263, 1268
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	4 cut(s)	7, 732, 806, 1023
GlaI	GCGC	1 cut(s)	1277
GluI	GCNGC	4 cut(s)	7, 732, 806, 1023
HaeIII	GGCC	1 cut(s)	1207
HapII	CCGG	2 cut(s)	439, 1133
HgaI	GACGC	1 cut(s)	1199
HhaI	GCGC	1 cut(s)	1278
Hin1II	CATG	3 cut(s)	436, 878, 1365
Hin6I	GCGC	1 cut(s)	1276
HinP1I	GCGC	1 cut(s)	1276
HincII	GTYRAC	1 cut(s)	1109
HindII	GTYRAC	1 cut(s)	1109
HpaII	CCGG	2 cut(s)	439, 1133
HphI	GGTGA	5 cut(s)	253, 371, 438, 734, 1291
Hpy166II	GTNNAC	1 cut(s)	1109
Hpy188I	TCNGA	4 cut(s)	337, 385, 559, 942
Hpy188III	TCNNGA	6 cut(s)	59, 215, 428, 776, 856, 1248
Hpy8I	GTNNAC	1 cut(s)	1109
HpyAV	CCTTC	5 cut(s)	299, 317, 742, 773, 1135
HpyCH4III	ACNGT	2 cut(s)	42, 1303
HpyCH4V	TGCA	1 cut(s)	578
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpyF3I	CTNAG	7 cut(s)	80, 90, 186, 558, 690, 849, 933
Hsp92II	CATG	3 cut(s)	436, 878, 1365
HspAI	GCGC	1 cut(s)	1276
KpnI	GGTACC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	4 cut(s)	424, 769, 1012, 1129
LguI	GCTCTTC	2 cut(s)	854, 893
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	3 cut(s)	718, 817, 1009
LweI	GCATC	2 cut(s)	279, 718
MaeIII	GTNAC	2 cut(s)	241, 685
MalI	GATC	4 cut(s)	426, 771, 1014, 1131
MboI	GATC	4 cut(s)	424, 769, 1012, 1129
MhlI	GDGCHC	1 cut(s)	905
MluCI	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1184, 1217, 1396
MlyI	GAGTC	7 cut(s)	107, 166, 341, 371, 386, 914, 1290
MmeI	TCCRAC	2 cut(s)	127, 298
MseI	TTAA	4 cut(s)	740, 813, 1266, 1395
MslI	CAYNNNNRTG	1 cut(s)	914
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	439, 1133
MspR9I	CCNGG	4 cut(s)	33, 986, 1134, 1344
MvaI	CCWGG	3 cut(s)	33, 986, 1344
MvnI	CGCG	1 cut(s)	1278
MwoI	GCNNNNNNNGC	1 cut(s)	267
NciI	CCSGG	1 cut(s)	1134
NdeII	GATC	4 cut(s)	424, 769, 1012, 1129
NlaIII	CATG	3 cut(s)	436, 878, 1365
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	569
PasI	CCCWGGG	1 cut(s)	1343
PciSI	GCTCTTC	2 cut(s)	854, 893
PfeI	GAWTC	5 cut(s)	197, 211, 338, 659, 937
PfoI	TCCNGGA	1 cut(s)	1132
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	4 cut(s)	8, 733, 807, 1024
PleI	GAGTC	7 cut(s)	107, 165, 340, 370, 385, 914, 1290
PpsI	GAGTC	7 cut(s)	107, 165, 340, 370, 385, 914, 1290
PsiI	TTATAA	1 cut(s)	470
Psp6I	CCWGG	3 cut(s)	31, 984, 1342
PspEI	GGTNACC	1 cut(s)	241
PspGI	CCWGG	3 cut(s)	31, 984, 1342
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	436, 1205
RsaI	GTAC	2 cut(s)	183, 826
RsaNI	GTAC	2 cut(s)	182, 825
RseI	CAYNNNNRTG	1 cut(s)	914
SalI	GTCGAC	1 cut(s)	1107
SapI	GCTCTTC	2 cut(s)	854, 893
SaqAI	TTAA	4 cut(s)	740, 813, 1266, 1395
SatI	GCNGC	4 cut(s)	7, 732, 806, 1023
Sau3AI	GATC	4 cut(s)	424, 769, 1012, 1129
Sau96I	GGNCC	2 cut(s)	436, 1205
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	7 cut(s)	107, 166, 341, 371, 386, 914, 1290
ScrFI	CCNGG	4 cut(s)	33, 986, 1134, 1344
SduI	GDGCHC	1 cut(s)	905
SfaNI	GCATC	2 cut(s)	279, 718
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1184, 1217, 1396
SsiI	CCGC	1 cut(s)	6
SspI	AATATT	2 cut(s)	646, 760
StyD4I	CCNGG	4 cut(s)	31, 984, 1132, 1342
TaaI	ACNGT	2 cut(s)	42, 1303
TaqI	TCGA	3 cut(s)	1089, 1108, 1380
TaqII	GACCGA	1 cut(s)	241
TasI	AATT	9 cut(s)	18, 53, 218, 414, 471, 536, 1184, 1217, 1396
TatI	WGTACW	1 cut(s)	824
TauI	GCSGC	1 cut(s)	9
TfiI	GAWTC	5 cut(s)	197, 211, 338, 659, 937
Tru1I	TTAA	4 cut(s)	740, 813, 1266, 1395
Tru9I	TTAA	4 cut(s)	740, 813, 1266, 1395
TscAI	CASTG	2 cut(s)	143, 1153
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	3 cut(s)	731, 805, 1022
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	318, 846
TspRI	CASTG	2 cut(s)	143, 1153
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	3 cut(s)	53, 218, 536
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1359
XmiI	GTMKAC	1 cut(s)	1108
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.