Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

24136211 .. 24139425

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23060.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGGTATTCTGGGGAATTGAAATAAAACCAGGCAGATCGTTTGGGTATCAATCGGATGAATTCGAAGGAAAGCTTCACATTACTCAGGCGACTTTAGGCCTCGGTGAATCGAAGGAGAGGTGTATAGTTCAGTGTTCCATTGGAAGTTACATTTCAGTCTTTGTGTGTTCTTTGTTACCAAATAAGAATGAATCGGTCCCCTTGGATCTTGAATTTGAGCCGGTTGATGGTTTGGTGACCTTCTCGGTGATTGGAACCCGAAGCATCCACCTCTCTGGTTACCAAGTGGATGAGAGCGAAGATGAAGGAGATGACTATAGATCGGATTCTTTTCGGGAGAATATTGCTGAGACCGAGTCAGAGTCAGAGTCTTCAGAATACGATAATGATGATGATAATGTTGATTTTATTGATGACGAAGATTTTGACATGTACCCGCCCTCACCTGTTCCCAATAGTGGAGTTGTAATTGAGGAGATAGAGGACGATGAGAAACCTGCTAATGGAAACAGTCAGTCCAAACGACAAGTGAAAAAGAATCAATCGAATGACTCTGAAAAGAACACAAATTCTCAGCATCAAATTGTTGTCAAGAAAAATGCCGGTGTCACTGTTTTGGAGAGTGAAGATGAAGATGGCTTTCCAATATCCACTAAACAGAAAACCAATATTGAGAAGCCTGAAGCAGCAACCGAACAGAAAGATAACAAAATTACTGAGAAAACCAAGAAGAAGAAAGTGAAAGATGGCGAGGCTGTTGGGTCAAAAAGGAAAGTCGAAGATGTTCACCAAGATTGTCAGCCAGAAGGGGAAAAGAAAAATAAGAAGAAGAAATTGAAAGAGCAAGCTAAGGAGGTAAATGCTGATGACAATGAAAAGCAACCTGAGGTTTTGAAGAGCCAAGAGCATGAACAAAAGCTATCTAATAAGAAGAGCTCTGACGTCGAAAATAATTCTATTCCTGGTGACAATCTCACCGAGGGGAAAAAGAAGAAGAAAAAGAAGAAGAAAGCCCAAGAGAGTGAAATAAAAACGGACACGGATGAAACTGCTGGCAACATGGAAGATCAGAACGAACCTGCTTTGGAGCAGACCAGTGGCAAGCGATCTAAGGGGAAAACCTTTCCAAATGGATTGGTTGTCGAGGAGCTAGCTATGGGAAAACCTGATGGCAAAAAAGCTTCTTCAGGAAAAAAGGTCAGTGTTCGGTACATTGGCAAGCTAAAGAATGGCAACATATTTGACTCCAATGTGGGAGGGCCACCTTTCAAGTTTCGCTTAGGTCTTGGACAAGTTATAGCAGGATGGGATGTTGGGGTTAACGGTATGCGTGTCGGGGACAAAAGAAGACTCACTATTCCACCAGAAATGGGTTATGGAAATAAACGTGCCGGTAAAATACCACCAAACTCATGGCTTGTGTTTGATGTTGAGCTGCTCGATGTGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

484

Amino Acids

53.65

Weight (kDa)

5.15

Isoelectric Point (pI)

49.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	945
Acc36I	ACCTGC	2 cut(s)	505, 1087
AciI	CCGC	1 cut(s)	437
AclWI	GGATC	1 cut(s)	213
AcsI	RAATTY	3 cut(s)	59, 212, 568
AcuI	CTGAAG	3 cut(s)	357, 702, 1170
AcyI	GRCGYC	1 cut(s)	942
AfaI	GTAC	2 cut(s)	434, 1211
AfiI	CCNNNNNNNGG	4 cut(s)	227, 458, 503, 1370
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	5 cut(s)	20, 212, 838, 895, 1270
AjnI	CCWGG	2 cut(s)	28, 961
AluBI	AGCT	9 cut(s)	73, 848, 919, 936, 1150, 1154, 1181, 1222, 1435
AluI	AGCT	9 cut(s)	73, 848, 919, 936, 1150, 1154, 1181, 1222, 1435
Alw21I	GWGCWC	1 cut(s)	938
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	2 cut(s)	97, 1259
ApeKI	GCWGC	2 cut(s)	686, 1435
ApoI	RAATTY	3 cut(s)	59, 212, 568
ArsI	GACNNNNNNTTYG	2 cut(s)	407, 439
Asp700I	GAANNNNTTC	1 cut(s)	783
AspS9I	GGNCC	2 cut(s)	196, 1259
AsuHPI	GGTGA	7 cut(s)	116, 247, 259, 435, 779, 967, 977
AsuII	TTCGAA	1 cut(s)	63
AsuNHI	GCTAGC	1 cut(s)	1150
AvaII	GGWCC	1 cut(s)	196
AxyI	CCTNAGG	1 cut(s)	885
BanII	GRGCYC	1 cut(s)	938
BbsI	GAAGAC	2 cut(s)	363, 1354
Bbv12I	GWGCWC	1 cut(s)	938
BbvI	GCAGC	2 cut(s)	698, 1422
BccI	CCATC	5 cut(s)	221, 629, 740, 1163, 1299
BciT130I	CCWGG	2 cut(s)	30, 963
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	1151
BfmI	CTRYAG	1 cut(s)	316
BfuAI	ACCTGC	2 cut(s)	505, 1087
BisI	GCNGC	2 cut(s)	687, 1436
BlsI	GCNGC	2 cut(s)	688, 1437
Bme1390I	CCNGG	2 cut(s)	30, 963
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	196, 1259
BmiI	GGNNCC	2 cut(s)	198, 256
BmrFI	CCNGG	2 cut(s)	30, 963
BmsI	GCATC	2 cut(s)	273, 586
BmtI	GCTAGC	1 cut(s)	1154
BpiI	GAAGAC	2 cut(s)	363, 1354
Bpu10I	CCTNAGC	2 cut(s)	849, 1279
Bpu14I	TTCGAA	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	942
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	100, 201, 978
Bsc4I	CCNNNNNNNGG	4 cut(s)	227, 458, 503, 1370
Bse118I	RCCGGY	3 cut(s)	220, 602, 1391
Bse1I	ACTGG	1 cut(s)	1095
Bse21I	CCTNAGG	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	30, 963
BseDI	CCNNGG	3 cut(s)	100, 201, 978
BseGI	GGATG	6 cut(s)	61, 264, 295, 1048, 1310, 1315
BseLI	CCNNNNNNNGG	4 cut(s)	227, 458, 503, 1370
BseMII	CTCAG	5 cut(s)	98, 339, 587, 708, 876
BseNI	ACTGG	1 cut(s)	1095
BseRI	GAGGAG	2 cut(s)	488, 1160
BseXI	GCAGC	2 cut(s)	698, 1422
BshFI	GGCC	2 cut(s)	99, 1261
BsiHKAI	GWGCWC	1 cut(s)	938
BsiSI	CCGG	3 cut(s)	221, 603, 1392
BslFI	GGGAC	2 cut(s)	182, 1352
BslI	CCNNNNNNNGG	4 cut(s)	227, 458, 503, 1370
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	2 cut(s)	182, 1352
BsnI	GGCC	2 cut(s)	99, 1261
Bso31I	GGTCTC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	938
Bsp143I	GATC	5 cut(s)	35, 205, 320, 1066, 1106
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	2 cut(s)	99, 1261
BspCNI	CTCAG	5 cut(s)	97, 340, 586, 709, 877
BspLI	GGNNCC	2 cut(s)	198, 256
BspMI	ACCTGC	2 cut(s)	505, 1087
BspOI	GCTAGC	1 cut(s)	1154
BspPI	GGATC	1 cut(s)	213
BspQI	GCTCTTC	2 cut(s)	890, 926
BspT104I	TTCGAA	1 cut(s)	63
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	3 cut(s)	220, 602, 1391
BsrI	ACTGG	1 cut(s)	1095
BssAI	RCCGGY	3 cut(s)	220, 602, 1391
BssECI	CCNNGG	3 cut(s)	100, 201, 978
BssMI	GATC	5 cut(s)	35, 205, 320, 1066, 1106
BssNI	GRCGYC	1 cut(s)	942
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	2 cut(s)	30, 963
Bst4CI	ACNGT	3 cut(s)	512, 613, 1325
Bst6I	CTCTTC	2 cut(s)	890, 926
BstACI	GRCGYC	1 cut(s)	942
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	5 cut(s)	846, 1054, 1103, 1152, 1220
BstDEI	CTNAG	8 cut(s)	84, 348, 573, 717, 849, 885, 1110, 1279
BstEII	GGTNACC	2 cut(s)	235, 278
BstF5I	GGATG	6 cut(s)	61, 264, 295, 1048, 1310, 1315
BstKTI	GATC	5 cut(s)	38, 208, 323, 1069, 1109
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	35, 205, 320, 1066, 1106
BstNI	CCWGG	2 cut(s)	30, 963
BstNSI	RCATGY	1 cut(s)	433
BstPI	GGTNACC	2 cut(s)	235, 278
BstSCI	CCNGG	2 cut(s)	28, 961
BstSFI	CTRYAG	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	698, 1422
BstV2I	GAAGAC	2 cut(s)	363, 1354
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	2 cut(s)	275, 1413
BstYI	RGATCY	1 cut(s)	205
Bsu36I	CCTNAGG	1 cut(s)	885
BsuRI	GGCC	2 cut(s)	99, 1261
BtsCI	GGATG	6 cut(s)	61, 264, 295, 1048, 1310, 1315
BtsIMutI	CAGTG	4 cut(s)	137, 609, 1102, 1207
BveI	ACCTGC	2 cut(s)	505, 1087
Cac8I	GCNNGC	5 cut(s)	846, 1054, 1103, 1152, 1220
Cfr10I	RCCGGY	3 cut(s)	220, 602, 1391
Cfr13I	GGNCC	2 cut(s)	196, 1259
Csp6I	GTAC	2 cut(s)	433, 1210
CviAII	CATG	4 cut(s)	430, 908, 1060, 1413
CviQI	GTAC	2 cut(s)	433, 1210
DdeI	CTNAG	8 cut(s)	84, 348, 573, 717, 849, 885, 1110, 1279
DpnI	GATC	5 cut(s)	37, 207, 322, 1068, 1108
DpnII	GATC	5 cut(s)	35, 205, 320, 1066, 1106
Eam1104I	CTCTTC	2 cut(s)	890, 926
EarI	CTCTTC	2 cut(s)	890, 926
Ecl136II	GAGCTC	1 cut(s)	936
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	938
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	936
Eco57I	CTGAAG	3 cut(s)	357, 702, 1170
Eco81I	CCTNAGG	1 cut(s)	885
Eco91I	GGTNACC	2 cut(s)	235, 278
EcoICRI	GAGCTC	1 cut(s)	936
EcoO65I	GGTNACC	2 cut(s)	235, 278
EcoRI	GAATTC	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	28, 961
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	938
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	4 cut(s)	433, 911, 1063, 1416
FalI	AAGNNNNNCTT	4 cut(s)	57, 89, 1262, 1294
FaqI	GGGAC	2 cut(s)	182, 1352
FatI	CATG	4 cut(s)	429, 907, 1059, 1412
FauI	CCCGC	1 cut(s)	444
Fnu4HI	GCNGC	2 cut(s)	687, 1436
FokI	GGATG	6 cut(s)	68, 251, 302, 1055, 1317, 1322
FriOI	GRGCYC	1 cut(s)	938
Fsp4HI	GCNGC	2 cut(s)	687, 1436
FspBI	CTAG	1 cut(s)	1151
GluI	GCNGC	2 cut(s)	687, 1436
HaeIII	GGCC	2 cut(s)	99, 1261
HapII	CCGG	3 cut(s)	221, 603, 1392
Hin1I	GRCGYC	1 cut(s)	942
Hin1II	CATG	4 cut(s)	433, 911, 1063, 1416
HincII	GTYRAC	1 cut(s)	1321
HindII	GTYRAC	1 cut(s)	1321
HindIII	AAGCTT	2 cut(s)	71, 1179
HpaI	GTTAAC	1 cut(s)	1321
HpaII	CCGG	3 cut(s)	221, 603, 1392
HphI	GGTGA	7 cut(s)	116, 247, 259, 435, 779, 967, 977
Hpy166II	GTNNAC	2 cut(s)	787, 1321
Hpy188I	TCNGA	8 cut(s)	55, 325, 361, 367, 376, 556, 940, 1071
Hpy188III	TCNNGA	4 cut(s)	209, 335, 592, 1188
Hpy8I	GTNNAC	2 cut(s)	787, 1321
Hpy99I	CGWCG	1 cut(s)	947
HpyAV	CCTTC	5 cut(s)	59, 106, 250, 299, 800
HpyCH4III	ACNGT	3 cut(s)	512, 613, 1325
HpyCH4IV	ACGT	2 cut(s)	942, 1387
HpyF3I	CTNAG	8 cut(s)	84, 348, 573, 717, 849, 885, 1110, 1279
HpySE526I	ACGT	2 cut(s)	942, 1387
Hsp92I	GRCGYC	1 cut(s)	942
Hsp92II	CATG	4 cut(s)	433, 911, 1063, 1416
KspAI	GTTAAC	1 cut(s)	1321
Kzo9I	GATC	5 cut(s)	35, 205, 320, 1066, 1106
LguI	GCTCTTC	2 cut(s)	890, 926
LmnI	GCTCC	2 cut(s)	1087, 1147
Lsp1109I	GCAGC	2 cut(s)	698, 1422
LweI	GCATC	2 cut(s)	273, 586
MaeI	CTAG	1 cut(s)	1151
MaeII	ACGT	2 cut(s)	942, 1387
MaeIII	GTNAC	6 cut(s)	146, 174, 235, 278, 607, 965
MalI	GATC	5 cut(s)	37, 207, 322, 1068, 1108
MboI	GATC	5 cut(s)	35, 205, 320, 1066, 1106
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	938
MlyI	GAGTC	6 cut(s)	365, 371, 377, 545, 1238, 1344
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	1 cut(s)	1320
MspI	CCGG	3 cut(s)	221, 603, 1392
MspR9I	CCNGG	2 cut(s)	30, 963
MvaI	CCWGG	2 cut(s)	30, 963
NdeII	GATC	5 cut(s)	35, 205, 320, 1066, 1106
NheI	GCTAGC	1 cut(s)	1150
NlaIII	CATG	4 cut(s)	433, 911, 1063, 1416
NlaIV	GGNNCC	2 cut(s)	198, 256
NmuCI	GTSAC	3 cut(s)	235, 607, 965
NspI	RCATGY	1 cut(s)	433
NspV	TTCGAA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	99
PciI	ACATGT	1 cut(s)	429
PciSI	GCTCTTC	2 cut(s)	890, 926
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	4 cut(s)	107, 191, 326, 538
PflFI	GACNNNGTC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	688, 1437
PleI	GAGTC	6 cut(s)	364, 370, 376, 545, 1238, 1344
PpsI	GAGTC	6 cut(s)	364, 370, 376, 545, 1238, 1344
PscI	ACATGT	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	938
Psp6I	CCWGG	2 cut(s)	28, 961
PspEI	GGTNACC	2 cut(s)	235, 278
PspGI	CCWGG	2 cut(s)	28, 961
PspN4I	GGNNCC	2 cut(s)	198, 256
PspPI	GGNCC	2 cut(s)	196, 1259
PsuI	RGATCY	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	355
RsaI	GTAC	2 cut(s)	434, 1211
RsaNI	GTAC	2 cut(s)	433, 1210
SacI	GAGCTC	1 cut(s)	938
SapI	GCTCTTC	2 cut(s)	890, 926
SaqAI	TTAA	1 cut(s)	1320
SatI	GCNGC	2 cut(s)	687, 1436
Sau3AI	GATC	5 cut(s)	35, 205, 320, 1066, 1106
Sau96I	GGNCC	2 cut(s)	196, 1259
SchI	GAGTC	6 cut(s)	365, 371, 377, 545, 1238, 1344
ScrFI	CCNGG	2 cut(s)	30, 963
SduI	GDGCHC	1 cut(s)	938
SfaNI	GCATC	2 cut(s)	273, 586
SfcI	CTRYAG	1 cut(s)	316
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	1 cut(s)	196
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	437
SspI	AATATT	2 cut(s)	343, 670
SspMI	CTAG	1 cut(s)	1151
SstI	GAGCTC	1 cut(s)	938
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	2 cut(s)	28, 961
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	512, 613, 1325
TaiI	ACGT	2 cut(s)	945, 1390
TaqI	TCGA	7 cut(s)	63, 110, 545, 777, 945, 1143, 1440
TaqII	GACCGA	2 cut(s)	184, 368
TfiI	GAWTC	4 cut(s)	107, 191, 326, 538
Tru1I	TTAA	1 cut(s)	1320
Tru9I	TTAA	1 cut(s)	1320
TscAI	CASTG	4 cut(s)	137, 616, 1102, 1207
TseFI	GTSAC	3 cut(s)	235, 607, 965
TseI	GCWGC	2 cut(s)	686, 1435
Tsp45I	GTSAC	3 cut(s)	235, 607, 965
TspDTI	ATGAA	7 cut(s)	72, 204, 318, 645, 888, 924, 1059
TspGWI	ACGGA	2 cut(s)	1049, 1055
TspRI	CASTG	4 cut(s)	137, 616, 1102, 1207
Tth111I	GACNNNGTC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	3 cut(s)	59, 212, 568
XceI	RCATGY	1 cut(s)	433
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1410
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	1 cut(s)	1151
ZraI	GACGTC	1 cut(s)	943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.