pycom01g19700

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
18298389 .. 18301860
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19700.1

Sequence Viewer

Length: 1506 bp
ATGATAATTTCGTGCGTCAAGTCTCCTGACGCCACCTGTGCTTCCGTGAACCCTGTTGCATGTAATAACCGTGCTACCGCGGGAAAATCATACGAGCATCAATCGGATCAATTCGAAGGAAGGCTTCACATTTCTCAGGCGACTTTAGGCCTCGGTGAATCGAAGGGGAGGAGTATAGTTCAGTGTTCCATTGGAGATAAAAGTCCAATCTTTCTATGTTCTTTGTTACCAAATAAGAATGAATCTGTCCCCTTGGATCTTGATTTTGAGCCAATTGATGGTTTGGTGACCTTCTCGGTGATTGGAAAACGAAGTATCCACCTCTCTGGTTACCTTGTGGAGGAAGGCGAAGATGAAAGAGATGACTATGGATCGGATTCTTCCGGGGAGGATATTGCGGACACCGAGTCAGAGTCTTCAGAGTATGATACCGATGATGATAATGTTGGATTTATTGACGATGAAGATTTTGACATGTACCCGCCTTCACCTGTTCCAAATAGTGGAGTTGTAATTGAGGAGATAGAGGACGATGAGAAACCTACTAATGGAAACAGTCGGTCCAAACAACAAGTGAAAAAGAATCAATCGAATGACTCTGAAAAGATCACAAATTCTCAGCAACAAATTGTTGTCAAGGAAAATGCTGGTGACCCTGTTTTGGAGAGTGAAGATGAAGATGGTTTTCCAATATCCACTAAACAGAAAACCAACATTGAGAAGCATGAAGCAGCAACTGAACAGAAGGATAGCAAGATTACTGAGAAAACCAAGAAGAAGAAAGTGAAAGATGGTGAAGCTGCTGGGTCCAAAAGGAAAGTCGAAGATGTTCAGCAAGACAGTCAGCCAGAAGGGGAAAAGAATAATAAGAAGAAGAAGAAATTGAAAGAGCAAGCTAAGGAGGGTAATGCTGATGACAATGAAAAGCAACCTGAGATTTTGAAGAGCCAAGAGCATGAGCAAAAGCTATCTAATAAGAAGAGCTCTGACATCGAAAAGAATTCTATTCCTGGTGAAAATCTCACGGAGGGGAAAAAGAAGAAGAAAAAGAACAAGAAAGCCCAGGAGACTGAAACAAAAACTGACATGGATGAAACTGTTGACAACATGGAAGATCAGAACAAAACTGGTTTGGAGCAAACCAGTGGCATCGATGAGCGATCTAAAGCGAAAACCTATCCAAATGGATTGGTTATCGAGGAGCTAGCTATGGGAAAACCTGATGGCAAGAAAGCTTCTTCGGGAAAAAAGGTCAGTGTTCGCTACATTGGCAAGCTAAAGAATGGCAACATATTTGACTCCAACGTGGGAGGGCCACCTTTCAAATTCCGCCTAGGTCTAGGACAAGTTATACCAGGATGGGATGTCGGGGTTAACGGTATGCGTGTCGGGGATAAAAGAAGACTCACTATTCCACCAGAAATGGGTTATGGACATAAACGTGCCGGTAAAATACCACCAAACTCATGGCTTGTGTTTGATGTTGAGCTGCTCGGTGTTAATTGA

Protein Analysis

502

Amino Acids

55.15

Weight (kDa)

5.14

Isoelectric Point (pI)

51.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPL PF17800 26 - 113 3.6e-17 Nucleoplasmin-like domain
FKBP_C PF00254 410 - 498 9.9e-32 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 278, 503
AccII CGCG 1 cut(s) 80
AciI CCGC 5 cut(s) 78, 80, 398, 482, 1330
AclWI GGATC 3 cut(s) 114, 264, 379
AcsI RAATTY 3 cut(s) 613, 1000, 1325
AcuI CTGAAG 1 cut(s) 402
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 6 cut(s) 278, 340, 503, 548, 661, 1424
AflIII ACRYGT 1 cut(s) 474
AgsI TTSAA 3 cut(s) 886, 943, 1324
AhdI GACNNNNNGTC 1 cut(s) 406
AjnI CCWGG 3 cut(s) 1009, 1062, 1354
AluBI AGCT 9 cut(s) 800, 896, 967, 984, 1204, 1208, 1235, 1276, 1489
AluI AGCT 9 cut(s) 800, 896, 967, 984, 1204, 1208, 1235, 1276, 1489
Alw21I GWGCWC 1 cut(s) 986
Alw26I GTCTC 2 cut(s) 27, 1061
AlwI GGATC 3 cut(s) 114, 264, 379
AlwNI CAGNNNCTG 1 cut(s) 737
AoxI GGCC 2 cut(s) 148, 1313
ApeKI GCWGC 3 cut(s) 731, 800, 1489
ApoI RAATTY 3 cut(s) 613, 1000, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 804, 836
Asp700I GAANNNNTTC 1 cut(s) 828
AspA2I CCTAGG 1 cut(s) 1333
AspS9I GGNCC 3 cut(s) 561, 807, 1313
AsuC2I CCSGG 1 cut(s) 385
AsuHPI GGTGA 7 cut(s) 167, 298, 310, 480, 662, 806, 1025
AsuII TTCGAA 1 cut(s) 114
AsuNHI GCTAGC 1 cut(s) 1204
AvaII GGWCC 2 cut(s) 561, 807
AvrII CCTAGG 1 cut(s) 1333
BanII GRGCYC 1 cut(s) 986
BbsI GAAGAC 2 cut(s) 408, 1408
Bbv12I GWGCWC 1 cut(s) 986
BbvI GCAGC 3 cut(s) 743, 787, 1476
BccI CCATC 5 cut(s) 272, 674, 785, 1217, 1353
BciT130I CCWGG 3 cut(s) 1011, 1064, 1356
BciVI GTATCC 1 cut(s) 326
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 2 cut(s) 27, 1061
BfaI CTAG 3 cut(s) 1205, 1334, 1340
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 3 cut(s) 732, 801, 1490
BlnI CCTAGG 1 cut(s) 1333
BlsI GCNGC 3 cut(s) 733, 802, 1491
Bme1390I CCNGG 4 cut(s) 385, 1011, 1064, 1356
Bme18I GGWCC 2 cut(s) 561, 807
BmeRI GACNNNNNGTC 1 cut(s) 406
BmgT120I GGNCC 3 cut(s) 561, 807, 1313
BmiI GGNNCC 1 cut(s) 808
BmrFI CCNGG 4 cut(s) 385, 1011, 1064, 1356
BmsI GCATC 2 cut(s) 106, 1158
BmtI GCTAGC 1 cut(s) 1208
BpiI GAAGAC 2 cut(s) 408, 1408
Bpu10I CCTNAGC 1 cut(s) 897
Bpu14I TTCGAA 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 385
Bsa29I ATCGAT 1 cut(s) 1152
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 6 cut(s) 78, 151, 252, 384, 1062, 1333
Bsc4I CCNNNNNNNGG 6 cut(s) 278, 340, 503, 548, 661, 1424
Bse118I RCCGGY 1 cut(s) 1445
Bse1I ACTGG 2 cut(s) 1132, 1143
BseBI CCWGG 3 cut(s) 1011, 1064, 1356
BseCI ATCGAT 1 cut(s) 1152
BseDI CCNNGG 6 cut(s) 78, 151, 252, 384, 1062, 1333
BseGI GGATG 3 cut(s) 1096, 1364, 1369
BseLI CCNNNNNNNGG 6 cut(s) 278, 340, 503, 548, 661, 1424
BseMII CTCAG 4 cut(s) 149, 632, 753, 924
BseNI ACTGG 2 cut(s) 1132, 1143
BseRI GAGGAG 3 cut(s) 184, 533, 1214
BseXI GCAGC 3 cut(s) 743, 787, 1476
BseYI CCCAGC 1 cut(s) 803
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 2 cut(s) 150, 1315
BshVI ATCGAT 1 cut(s) 1152
BsiHKAI GWGCWC 1 cut(s) 986
BsiSI CCGG 2 cut(s) 384, 1446
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 6 cut(s) 278, 340, 503, 548, 661, 1424
BsmAI GTCTC 2 cut(s) 27, 1061
BsmFI GGGAC 1 cut(s) 233
BsnI GGCC 2 cut(s) 150, 1315
Bsp119I TTCGAA 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 986
Bsp143I GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
BspACI CCGC 5 cut(s) 78, 80, 398, 482, 1330
BspANI GGCC 2 cut(s) 150, 1315
BspCNI CTCAG 4 cut(s) 148, 631, 754, 925
BspDI ATCGAT 1 cut(s) 1152
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 808
BspOI GCTAGC 1 cut(s) 1208
BspPI GGATC 3 cut(s) 114, 264, 379
BspQI GCTCTTC 2 cut(s) 938, 974
BspT104I TTCGAA 1 cut(s) 114
BsrFI RCCGGY 1 cut(s) 1445
BsrI ACTGG 2 cut(s) 1132, 1143
BssAI RCCGGY 1 cut(s) 1445
BssECI CCNNGG 6 cut(s) 78, 151, 252, 384, 1062, 1333
BssMI GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
BssNI GRCGYC 1 cut(s) 30
BssT1I CCWWGG 2 cut(s) 252, 1333
Bst2UI CCWGG 3 cut(s) 1011, 1064, 1356
Bst4CI ACNGT 5 cut(s) 71, 557, 842, 1099, 1379
Bst6I CTCTTC 2 cut(s) 938, 974
BstACI GRCGYC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 114
BstC8I GCNNGC 3 cut(s) 894, 1206, 1274
BstDEI CTNAG 5 cut(s) 135, 618, 762, 897, 933
BstDSI CCRYGG 1 cut(s) 78
BstEII GGTNACC 3 cut(s) 286, 329, 650
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 3 cut(s) 1096, 1364, 1369
BstFNI CGCG 1 cut(s) 80
BstKTI GATC 6 cut(s) 109, 259, 374, 609, 1117, 1163
BstMAI GTCTC 2 cut(s) 27, 1061
BstMBI GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
BstMWI GCNNNNNNNGC 2 cut(s) 38, 1269
BstNI CCWGG 3 cut(s) 1011, 1064, 1356
BstNSI RCATGY 2 cut(s) 63, 478
BstPI GGTNACC 3 cut(s) 286, 329, 650
BstSCI CCNGG 4 cut(s) 383, 1009, 1062, 1354
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 3 cut(s) 743, 787, 1476
BstV2I GAAGAC 2 cut(s) 408, 1408
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 2 cut(s) 326, 1467
BstYI RGATCY 1 cut(s) 256
Bsu15I ATCGAT 1 cut(s) 1152
BsuI GTATCC 1 cut(s) 326
BsuRI GGCC 2 cut(s) 150, 1315
BsuTUI ATCGAT 1 cut(s) 1152
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 1096, 1364, 1369
BtsIMutI CAGTG 3 cut(s) 188, 1150, 1261
Cac8I GCNNGC 3 cut(s) 894, 1206, 1274
CaiI CAGNNNCTG 1 cut(s) 737
Cfr10I RCCGGY 1 cut(s) 1445
Cfr13I GGNCC 3 cut(s) 561, 807, 1313
Cfr42I CCGCGG 1 cut(s) 81
ClaI ATCGAT 1 cut(s) 1152
CseI GACGC 2 cut(s) 4, 38
Csp6I GTAC 1 cut(s) 478
CviAII CATG 7 cut(s) 60, 475, 725, 956, 1087, 1108, 1467
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 5 cut(s) 135, 618, 762, 897, 933
DpnI GATC 6 cut(s) 108, 258, 373, 608, 1116, 1162
DpnII GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
DriI GACNNNNNGTC 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 938, 974
Eam1105I GACNNNNNGTC 1 cut(s) 406
EarI CTCTTC 2 cut(s) 938, 974
EciI GGCGGA 1 cut(s) 1319
Ecl136II GAGCTC 1 cut(s) 984
Eco130I CCWWGG 2 cut(s) 252, 1333
Eco147I AGGCCT 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 986
Eco47I GGWCC 2 cut(s) 561, 807
Eco53kI GAGCTC 1 cut(s) 984
Eco57I CTGAAG 1 cut(s) 402
Eco91I GGTNACC 3 cut(s) 286, 329, 650
EcoICRI GAGCTC 1 cut(s) 984
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoO65I GGTNACC 3 cut(s) 286, 329, 650
EcoRI GAATTC 1 cut(s) 1000
EcoRII CCWGG 3 cut(s) 1009, 1062, 1354
EcoT14I CCWWGG 2 cut(s) 252, 1333
EcoT38I GRGCYC 1 cut(s) 986
ErhI CCWWGG 2 cut(s) 252, 1333
FaeI CATG 7 cut(s) 63, 478, 728, 959, 1090, 1111, 1470
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FaqI GGGAC 1 cut(s) 233
FatI CATG 7 cut(s) 59, 474, 724, 955, 1086, 1107, 1466
FauI CCCGC 2 cut(s) 73, 489
Fnu4HI GCNGC 3 cut(s) 732, 801, 1490
FokI GGATG 3 cut(s) 1103, 1371, 1376
FriOI GRGCYC 1 cut(s) 986
Fsp4HI GCNGC 3 cut(s) 732, 801, 1490
FspBI CTAG 3 cut(s) 1205, 1334, 1340
GluI GCNGC 3 cut(s) 732, 801, 1490
GsaI CCCAGC 1 cut(s) 807
HaeIII GGCC 2 cut(s) 150, 1315
HapII CCGG 2 cut(s) 384, 1446
HgaI GACGC 2 cut(s) 4, 38
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 7 cut(s) 63, 478, 728, 959, 1090, 1111, 1470
HincII GTYRAC 2 cut(s) 1102, 1375
HindII GTYRAC 2 cut(s) 1102, 1375
HindIII AAGCTT 1 cut(s) 1233
HinfI GANTC 9 cut(s) 158, 242, 377, 407, 413, 583, 596, 1298, 1404
HpaI GTTAAC 1 cut(s) 1375
HpaII CCGG 2 cut(s) 384, 1446
HphI GGTGA 7 cut(s) 167, 298, 310, 480, 662, 806, 1025
Hpy166II GTNNAC 3 cut(s) 49, 1102, 1375
Hpy188I TCNGA 7 cut(s) 106, 376, 412, 421, 601, 988, 1119
Hpy188III TCNNGA 3 cut(s) 26, 260, 1242
Hpy8I GTNNAC 3 cut(s) 49, 1102, 1375
HpyAV CCTTC 8 cut(s) 110, 114, 157, 301, 338, 495, 739, 845
HpyCH4III ACNGT 5 cut(s) 71, 557, 842, 1099, 1379
HpyCH4IV ACGT 2 cut(s) 1305, 1441
HpyCH4V TGCA 1 cut(s) 59
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 1269
HpyF3I CTNAG 5 cut(s) 135, 618, 762, 897, 933
HpySE526I ACGT 2 cut(s) 1305, 1441
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 7 cut(s) 63, 478, 728, 959, 1090, 1111, 1470
KspAI GTTAAC 1 cut(s) 1375
KspI CCGCGG 1 cut(s) 81
Kzo9I GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
LguI GCTCTTC 2 cut(s) 938, 974
LmnI GCTCC 2 cut(s) 1135, 1201
Lsp1109I GCAGC 3 cut(s) 743, 787, 1476
LweI GCATC 2 cut(s) 106, 1158
MaeI CTAG 3 cut(s) 1205, 1334, 1340
MaeII ACGT 2 cut(s) 1305, 1441
MaeIII GTNAC 4 cut(s) 225, 286, 329, 650
MalI GATC 6 cut(s) 108, 258, 373, 608, 1116, 1162
MboI GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
MfeI CAATTG 1 cut(s) 273
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 986
MlyI GAGTC 5 cut(s) 416, 422, 590, 1292, 1398
MmeI TCCRAC 2 cut(s) 427, 1326
MroXI GAANNNNTTC 1 cut(s) 828
MseI TTAA 2 cut(s) 1374, 1500
MslI CAYNNNNRTG 1 cut(s) 1440
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 384, 1446
MspR9I CCNGG 4 cut(s) 385, 1011, 1064, 1356
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 3 cut(s) 1011, 1064, 1356
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 38, 1269
NciI CCSGG 1 cut(s) 385
NdeII GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
NheI GCTAGC 1 cut(s) 1204
NlaIII CATG 7 cut(s) 63, 478, 728, 959, 1090, 1111, 1470
NlaIV GGNNCC 1 cut(s) 808
NmuCI GTSAC 2 cut(s) 286, 650
NspI RCATGY 2 cut(s) 63, 478
NspV TTCGAA 1 cut(s) 114
PceI AGGCCT 1 cut(s) 150
PciI ACATGT 1 cut(s) 474
PciSI GCTCTTC 2 cut(s) 938, 974
PdmI GAANNNNTTC 1 cut(s) 828
PfeI GAWTC 4 cut(s) 158, 242, 377, 583
PflMI CCANNNNNTGG 2 cut(s) 278, 503
PkrI GCNGC 3 cut(s) 733, 802, 1491
PleI GAGTC 5 cut(s) 415, 421, 590, 1292, 1398
PpsI GAGTC 5 cut(s) 415, 421, 590, 1292, 1398
PscI ACATGT 1 cut(s) 474
Psp124BI GAGCTC 1 cut(s) 986
Psp6I CCWGG 3 cut(s) 1009, 1062, 1354
PspEI GGTNACC 3 cut(s) 286, 329, 650
PspFI CCCAGC 1 cut(s) 803
PspGI CCWGG 3 cut(s) 1009, 1062, 1354
PspN4I GGNNCC 1 cut(s) 808
PspPI GGNCC 3 cut(s) 561, 807, 1313
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
RseI CAYNNNNRTG 1 cut(s) 1440
SacI GAGCTC 1 cut(s) 986
SacII CCGCGG 1 cut(s) 81
SapI GCTCTTC 2 cut(s) 938, 974
SaqAI TTAA 2 cut(s) 1374, 1500
SatI GCNGC 3 cut(s) 732, 801, 1490
Sau3AI GATC 6 cut(s) 106, 256, 371, 606, 1114, 1160
Sau96I GGNCC 3 cut(s) 561, 807, 1313
SchI GAGTC 5 cut(s) 416, 422, 590, 1292, 1398
ScrFI CCNGG 4 cut(s) 385, 1011, 1064, 1356
SduI GDGCHC 1 cut(s) 986
SfaNI GCATC 2 cut(s) 106, 1158
Sfr303I CCGCGG 1 cut(s) 81
SfuI TTCGAA 1 cut(s) 114
SgrBI CCGCGG 1 cut(s) 81
SinI GGWCC 2 cut(s) 561, 807
SmiMI CAYNNNNRTG 1 cut(s) 1440
SseBI AGGCCT 1 cut(s) 150
SsiI CCGC 5 cut(s) 78, 80, 398, 482, 1330
SspMI CTAG 3 cut(s) 1205, 1334, 1340
SstI GAGCTC 1 cut(s) 986
StuI AGGCCT 1 cut(s) 150
StyD4I CCNGG 4 cut(s) 383, 1009, 1062, 1354
StyI CCWWGG 2 cut(s) 252, 1333
TaaI ACNGT 5 cut(s) 71, 557, 842, 1099, 1379
TaiI ACGT 2 cut(s) 1308, 1444
TaqI TCGA 7 cut(s) 114, 161, 590, 822, 993, 1152, 1197
TaqII GACCGA 1 cut(s) 549
TfiI GAWTC 4 cut(s) 158, 242, 377, 583
Tru1I TTAA 2 cut(s) 1374, 1500
Tru9I TTAA 2 cut(s) 1374, 1500
TscAI CASTG 3 cut(s) 188, 1150, 1261
TseFI GTSAC 2 cut(s) 286, 650
TseI GCWGC 3 cut(s) 731, 800, 1489
Tsp45I GTSAC 2 cut(s) 286, 650
TspDTI ATGAA 7 cut(s) 255, 369, 477, 690, 741, 936, 1107
TspGWI ACGGA 2 cut(s) 34, 1040
TspRI CASTG 3 cut(s) 188, 1150, 1261
Van91I CCANNNNNTGG 2 cut(s) 278, 503
VpaK11BI GGWCC 2 cut(s) 561, 807
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 3 cut(s) 613, 1000, 1325
XceI RCATGY 2 cut(s) 63, 478
XcmI CCANNNNNNNNNTGG 1 cut(s) 1464
XmaJI CCTAGG 1 cut(s) 1333
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 3 cut(s) 1205, 1334, 1340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.