Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

28043260 .. 28047319

Gene Structure 4060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGGGATTTTGGGGAATTGAAGTCAAACCGGACGAACCATATGGTTATCAATCCGATGAATTTAAAGGAAGGCTTCACATTACTCAGGCGACTTTAGGCCTTGGTGAATCGAAGGAGAGGAGCATAGTTCAGTGCTCCATGGGATATAAGAGTCCAATCTTTTTGTGTTCCTTGTTACCAAATAAGAATGAATCATGTCCGTTGGATCTTGAATTCGAGGGTGTTGATGGTTTGATAGACTTCTCGGTGATTGGCAAGCGGAGTGTCCATCTCTCTGGTTACTTTGTGGATGATGACAGAGATGCCAGAGATGACTATGAATCGGATTCTTTTGGGGAGGATATTGCTGAAACTGAGTCGGAGTCATCAGAATACGACAGTGACGATGCTTATGATGATGGATTTATTGACGATGAAGATCTGGACATTTACCCGCCCTCACCTGTTCCCAATAGCGGAGTTGTAATTGAGGAGATAGAGGATGATGAGAAACCTACGAATGGAAACATCCAGTCCAAACGACTACTAAAAAAGAATAAATCAAGTTGCTTGGAGGACAAAAACTCTCAACATCAAATTGTTTCCAAGAGAAATGCTGGCGTACCTGTTCTGGAGAGTGAAGATGAAGATGGCTTTCCAATATCCACCAAGCAGAAAAGCAACTTCCATATTGAGAAGCCTGAAGCAGCAACAGAACAGGAAGAAAACAAAATATCTGAGAAAAGCAAGAAAAAGAAAGTGAAAGATGGTGATGATACTGCTGGGTTAAAAAGGAAAGTTGACGATGTTGACCAAGATGGTCAGCCAGAAAGGCGAAAGAAAAATAAGAAGAAGAAGAAGCTGAGAGAGCAAGCTAAAGAGGGAAATGCAGATGAAGTCAATGCTTGCACTGACAATGAAAAGCAACCTGAGATCTACAAGAGCCAAGATATTAACCAGGCTTTGCCAGTTAAGAAGGGCTCTGACATCAACATGGATTCTTTTCCTGGTGAAAATCACACAGAGGAGAAAAAGAAGCAGAAAAAGAAGAAGAAAGCCCAGGAGAGTGGAACAAAAGTGGATCAAACTGTTGCTAACACGGAAGATCCAAATGAACCTACTTGGGAGAAAACCAATGGCAAGCCATCTAAAGTGAGAACCTTTGGAAATGGATTTGTTATCGAGGACCTATCTATGGGCCAACCAGATGGCAAAAGAGCTTCTCCAGGACAAAAGGTCAGTGTTCGCTACATTGGCAAGCTAAAAAATGGAAAAATATTTGACTCAAACGTGGGAGGACCACCCTTCAAATTCCGCTTAGGTATAGGTCAAGTTATATCAGGCTGGGATGTTGGGGTTAATGGTATGCGTGTTGGGGACAAAAGAAGACTCACTATTCCACCAGAAATGGGTTATGGACGTGAACGTACTGGAAAAATACCACCAAACTCATGGCTTGTGTTTGATGTTGAGTTGGTTGCTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

490

Amino Acids

54.61

Weight (kDa)

5.13

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	259, 434, 456, 1294
AclWI	GGATC	3 cut(s)	213, 1068, 1079
AcsI	RAATTY	3 cut(s)	59, 212, 1289
AcuI	CTGAAG	1 cut(s)	702
AfaI	GTAC	2 cut(s)	603, 1408
AfiI	CCNNNNNNNGG	4 cut(s)	455, 500, 1174, 1388
AgsI	TTSAA	3 cut(s)	20, 212, 1288
AhdI	GACNNNNNGTC	1 cut(s)	1214
AjiI	CACGTC	1 cut(s)	1400
AjnI	CCWGG	4 cut(s)	936, 985, 1038, 1204
AluBI	AGCT	4 cut(s)	841, 854, 1199, 1240
AluI	AGCT	4 cut(s)	841, 854, 1199, 1240
Alw21I	GWGCWC	1 cut(s)	137
AlwI	GGATC	3 cut(s)	213, 1068, 1079
AoxI	GGCC	2 cut(s)	97, 1177
ApeKI	GCWGC	1 cut(s)	686
ApoI	RAATTY	3 cut(s)	59, 212, 1289
AspS9I	GGNCC	3 cut(s)	1165, 1177, 1277
AsuHPI	GGTGA	5 cut(s)	116, 259, 432, 761, 1001
AvaII	GGWCC	2 cut(s)	1165, 1277
BanII	GRGCYC	1 cut(s)	962
BbsI	GAAGAC	1 cut(s)	1372
Bbv12I	GWGCWC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	698
BccI	CCATC	8 cut(s)	221, 276, 392, 623, 740, 791, 1132, 1181
BciT130I	CCWGG	4 cut(s)	938, 987, 1040, 1206
BglI	GCCNNNNNGGC	1 cut(s)	811
BglII	AGATCT	2 cut(s)	418, 912
BisI	GCNGC	1 cut(s)	687
BlsI	GCNGC	1 cut(s)	688
Bme1390I	CCNGG	4 cut(s)	938, 987, 1040, 1206
Bme18I	GGWCC	2 cut(s)	1165, 1277
BmeRI	GACNNNNNGTC	1 cut(s)	1214
BmgBI	CACGTC	1 cut(s)	1400
BmgT120I	GGNCC	3 cut(s)	1165, 1177, 1277
BmrFI	CCNGG	4 cut(s)	938, 987, 1040, 1206
BmsI	GCATC	2 cut(s)	292, 376
BpiI	GAAGAC	1 cut(s)	1372
BpmI	CTGGAG	2 cut(s)	632, 1188
Bpu10I	CCTNAGC	1 cut(s)	1297
BsaBI	GATNNNNATC	1 cut(s)	417
BsaJI	CCNNGG	3 cut(s)	100, 138, 1038
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	4 cut(s)	455, 500, 1174, 1388
Bse1I	ACTGG	3 cut(s)	511, 947, 1414
Bse8I	GATNNNNATC	1 cut(s)	417
BseBI	CCWGG	4 cut(s)	938, 987, 1040, 1206
BseDI	CCNNGG	3 cut(s)	100, 138, 1038
BseGI	GGATG	4 cut(s)	295, 487, 507, 1333
BseJI	GATNNNNATC	1 cut(s)	417
BseLI	CCNNNNNNNGG	4 cut(s)	455, 500, 1174, 1388
BseMII	CTCAG	5 cut(s)	98, 345, 708, 833, 900
BseNI	ACTGG	3 cut(s)	511, 947, 1414
BseRI	GAGGAG	3 cut(s)	133, 485, 1019
BseXI	GCAGC	1 cut(s)	698
BseYI	CCCAGC	2 cut(s)	761, 1323
BshFI	GGCC	2 cut(s)	99, 1179
BsiHKAI	GWGCWC	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	1370
BslI	CCNNNNNNNGG	4 cut(s)	455, 500, 1174, 1388
BsmFI	GGGAC	1 cut(s)	1370
BsnI	GGCC	2 cut(s)	99, 1179
Bsp1286I	GDGCHC	2 cut(s)	137, 962
Bsp143I	GATC	5 cut(s)	205, 418, 912, 1060, 1084
Bsp19I	CCATGG	1 cut(s)	138
BspACI	CCGC	4 cut(s)	259, 434, 456, 1294
BspANI	GGCC	2 cut(s)	99, 1179
BspCNI	CTCAG	5 cut(s)	97, 346, 709, 834, 901
BspPI	GGATC	3 cut(s)	213, 1068, 1079
BsrI	ACTGG	3 cut(s)	511, 947, 1414
BssECI	CCNNGG	3 cut(s)	100, 138, 1038
BssMI	GATC	5 cut(s)	205, 418, 912, 1060, 1084
BssT1I	CCWWGG	2 cut(s)	100, 138
Bst2UI	CCWGG	4 cut(s)	938, 987, 1040, 1206
Bst4CI	ACNGT	2 cut(s)	380, 1069
BstC8I	GCNNGC	6 cut(s)	257, 598, 852, 886, 1121, 1238
BstDEI	CTNAG	6 cut(s)	84, 354, 717, 842, 909, 1297
BstDSI	CCRYGG	1 cut(s)	138
BstF5I	GGATG	4 cut(s)	295, 487, 507, 1333
BstKTI	GATC	5 cut(s)	208, 421, 915, 1063, 1087
BstMBI	GATC	5 cut(s)	205, 418, 912, 1060, 1084
BstMWI	GCNNNNNNNGC	3 cut(s)	811, 847, 1233
BstNI	CCWGG	4 cut(s)	938, 987, 1040, 1206
BstSCI	CCNGG	4 cut(s)	936, 985, 1038, 1204
BstV1I	GCAGC	1 cut(s)	698
BstV2I	GAAGAC	1 cut(s)	1372
BstX2I	RGATCY	4 cut(s)	205, 418, 912, 1084
BstXI	CCANNNNNNTGG	4 cut(s)	275, 1046, 1187, 1431
BstYI	RGATCY	4 cut(s)	205, 418, 912, 1084
BsuRI	GGCC	2 cut(s)	99, 1179
BtgI	CCRYGG	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	1400
BtsCI	GGATG	4 cut(s)	295, 487, 507, 1333
BtsIMutI	CAGTG	4 cut(s)	137, 385, 888, 1225
Cac8I	GCNNGC	6 cut(s)	257, 598, 852, 886, 1121, 1238
Cfr13I	GGNCC	3 cut(s)	1165, 1177, 1277
Csp6I	GTAC	2 cut(s)	602, 1407
CviAII	CATG	4 cut(s)	139, 195, 973, 1431
CviQI	GTAC	2 cut(s)	602, 1407
DdeI	CTNAG	6 cut(s)	84, 354, 717, 842, 909, 1297
DpnI	GATC	5 cut(s)	207, 420, 914, 1062, 1086
DpnII	GATC	5 cut(s)	205, 418, 912, 1060, 1084
DraI	TTTAAA	1 cut(s)	64
DriI	GACNNNNNGTC	1 cut(s)	1214
Eam1105I	GACNNNNNGTC	1 cut(s)	1214
Eco130I	CCWWGG	2 cut(s)	100, 138
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	962
Eco47I	GGWCC	2 cut(s)	1165, 1277
Eco57I	CTGAAG	1 cut(s)	702
EcoO109I	RGGNCCY	1 cut(s)	1165
EcoRI	GAATTC	1 cut(s)	212
EcoRII	CCWGG	4 cut(s)	936, 985, 1038, 1204
EcoT14I	CCWWGG	2 cut(s)	100, 138
EcoT38I	GRGCYC	1 cut(s)	962
ErhI	CCWWGG	2 cut(s)	100, 138
FaeI	CATG	4 cut(s)	142, 198, 976, 1434
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	1 cut(s)	1370
FatI	CATG	4 cut(s)	138, 194, 972, 1430
FauI	CCCGC	1 cut(s)	441
FauNDI	CATATG	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	687
FokI	GGATG	4 cut(s)	302, 494, 494, 1340
FriOI	GRGCYC	1 cut(s)	962
Fsp4HI	GCNGC	1 cut(s)	687
GluI	GCNGC	1 cut(s)	687
GsaI	CCCAGC	2 cut(s)	765, 1327
GsuI	CTGGAG	2 cut(s)	632, 1188
HaeIII	GGCC	2 cut(s)	99, 1179
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	4 cut(s)	142, 198, 976, 1434
HincII	GTYRAC	2 cut(s)	781, 790
HindII	GTYRAC	2 cut(s)	781, 790
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	5 cut(s)	116, 259, 432, 761, 1001
Hpy166II	GTNNAC	3 cut(s)	781, 790, 1403
Hpy188I	TCNGA	6 cut(s)	55, 325, 361, 370, 718, 964
Hpy188III	TCNNGA	3 cut(s)	209, 422, 611
Hpy8I	GTNNAC	3 cut(s)	781, 790, 1403
HpyAV	CCTTC	4 cut(s)	63, 106, 949, 1294
HpyCH4III	ACNGT	2 cut(s)	380, 1069
HpyCH4IV	ACGT	3 cut(s)	1269, 1399, 1405
HpyCH4V	TGCA	2 cut(s)	869, 888
HpyF10VI	GCNNNNNNNGC	3 cut(s)	811, 847, 1233
HpyF3I	CTNAG	6 cut(s)	84, 354, 717, 842, 909, 1297
HpySE526I	ACGT	3 cut(s)	1269, 1399, 1405
Hsp92II	CATG	4 cut(s)	142, 198, 976, 1434
Kzo9I	GATC	5 cut(s)	205, 418, 912, 1060, 1084
LmnI	GCTCC	2 cut(s)	120, 140
Lsp1109I	GCAGC	1 cut(s)	698
LweI	GCATC	2 cut(s)	292, 376
MaeII	ACGT	3 cut(s)	1269, 1399, 1405
MaeIII	GTNAC	3 cut(s)	174, 278, 380
MalI	GATC	5 cut(s)	207, 420, 914, 1062, 1086
MboI	GATC	5 cut(s)	205, 418, 912, 1060, 1084
MflI	RGATCY	4 cut(s)	205, 418, 912, 1084
MhlI	GDGCHC	2 cut(s)	137, 962
MluCI	AATT	7 cut(s)	15, 59, 212, 465, 576, 1289, 1465
MlyI	GAGTC	5 cut(s)	160, 365, 371, 1256, 1362
MmeI	TCCRAC	2 cut(s)	183, 339
MseI	TTAA	6 cut(s)	63, 767, 933, 951, 1338, 1464
MslI	CAYNNNNRTG	1 cut(s)	971
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	4 cut(s)	938, 987, 1040, 1206
MvaI	CCWGG	4 cut(s)	938, 987, 1040, 1206
MwoI	GCNNNNNNNGC	3 cut(s)	811, 847, 1233
NcoI	CCATGG	1 cut(s)	138
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	5 cut(s)	205, 418, 912, 1060, 1084
NlaIII	CATG	4 cut(s)	142, 198, 976, 1434
NmuCI	GTSAC	1 cut(s)	380
PceI	AGGCCT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PfeI	GAWTC	5 cut(s)	107, 191, 320, 326, 977
PfoI	TCCNGGA	1 cut(s)	1204
PkrI	GCNGC	1 cut(s)	688
PleI	GAGTC	5 cut(s)	159, 364, 370, 1256, 1362
PpsI	GAGTC	5 cut(s)	159, 364, 370, 1256, 1362
PpuMI	RGGWCCY	1 cut(s)	1165
Psp5II	RGGWCCY	1 cut(s)	1165
Psp6I	CCWGG	4 cut(s)	936, 985, 1038, 1204
PspFI	CCCAGC	2 cut(s)	761, 1323
PspGI	CCWGG	4 cut(s)	936, 985, 1038, 1204
PspPI	GGNCC	3 cut(s)	1165, 1177, 1277
PspPPI	RGGWCCY	1 cut(s)	1165
PsuI	RGATCY	4 cut(s)	205, 418, 912, 1084
RsaI	GTAC	2 cut(s)	603, 1408
RsaNI	GTAC	2 cut(s)	602, 1407
RseI	CAYNNNNRTG	1 cut(s)	971
SaqAI	TTAA	6 cut(s)	63, 767, 933, 951, 1338, 1464
SatI	GCNGC	1 cut(s)	687
Sau3AI	GATC	5 cut(s)	205, 418, 912, 1060, 1084
Sau96I	GGNCC	3 cut(s)	1165, 1177, 1277
SchI	GAGTC	5 cut(s)	160, 365, 371, 1256, 1362
ScrFI	CCNGG	4 cut(s)	938, 987, 1040, 1206
SduI	GDGCHC	2 cut(s)	137, 962
SfaNI	GCATC	2 cut(s)	292, 376
SinI	GGWCC	2 cut(s)	1165, 1277
SmiMI	CAYNNNNRTG	1 cut(s)	971
Sse9I	AATT	7 cut(s)	15, 59, 212, 465, 576, 1289, 1465
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	4 cut(s)	259, 434, 456, 1294
SspI	AATATT	1 cut(s)	1257
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	4 cut(s)	936, 985, 1038, 1204
StyI	CCWWGG	2 cut(s)	100, 138
TaaI	ACNGT	2 cut(s)	380, 1069
TaiI	ACGT	3 cut(s)	1272, 1402, 1408
TaqI	TCGA	3 cut(s)	110, 216, 1161
TasI	AATT	7 cut(s)	15, 59, 212, 465, 576, 1289, 1465
TfiI	GAWTC	5 cut(s)	107, 191, 320, 326, 977
Tru1I	TTAA	6 cut(s)	63, 767, 933, 951, 1338, 1464
Tru9I	TTAA	6 cut(s)	63, 767, 933, 951, 1338, 1464
TscAI	CASTG	4 cut(s)	137, 385, 895, 1225
TseFI	GTSAC	1 cut(s)	380
TseI	GCWGC	1 cut(s)	686
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	8 cut(s)	72, 204, 333, 429, 639, 888, 912, 1107
TspGWI	ACGGA	2 cut(s)	189, 1094
TspRI	CASTG	4 cut(s)	137, 385, 895, 1225
VpaK11BI	GGWCC	2 cut(s)	1165, 1277
XapI	RAATTY	3 cut(s)	59, 212, 1289
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.