Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Forward (+)

28449903 .. 28453536

Gene Structure 3634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1185400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGGATTTTGGGGAATTGAGGTAAAACCAGGAAAATCGTACGAGCATCAATCGGATGAATTCGAAGGAAGGCTTCACATTTCTCAGGCGACTTTAGGCCTCGGTGAATCGAAGGGGAGGAGTATAGTTCAGTGTTCCATTGGAGATAAAAGTCCAATCTTTCTATGTTCCTTGTTACCAAATAAGAATGAATCTGTCCCCTTGGATCTTGATTTTGAGCCGATTGATGGTTTGGTGACCTTCTCGGTGATTGGAAAACAAAGTATCCACCTCTCTGGTTACCTTGTGGAGGAAGGCGAAGATGAAAGAGATGACTATGGATCGGATTCTTCCGGGGAGGATATTGCAGACACCGAGTCAGAGTCTTCAGAGTATGATACCGATGATGATAATGTTGGATTTATTGACGATGAAGATTTTGACATGTACCCGCCTTCACATGTTCCAAATAGTGGAGTTGTAATTGAGGAGATAGAGGACGGTGAGAAACCTACTAATGGAAACAGTCAGTCCAAACGACAAGTGAAAAAGAATCAATCGAATGACTCTGAAAAGGACACAAATTCTCAGCAACAAATTGTTGTCAAGGAAAATGCTGGTGTCCCTGTTTTGGAGAGTGAAGATGAAGATGGTTTTCCAATATCCACTAAACAGAAAACCAACATTGAGAAGCATGAAGCAGCAACTGAACAGAAAGATAGCAAAATTACTAAGAAAACCAAGAAGAAGAAAGTGAAAGATGGTGAAGCTGCTGGGTCCAAAAGGAAAGTCGAAGATGTTCAGCAAGATGGTCAGCCAGAAGGGGAAAAGAAAAATAAGAAAAAGAAATTGAAAGAGCAAGCTAAGGAGGGTAATGCTGATGACAATGAAAAGCAACCTGAGATTTTGAAGAGCCAAGAGCATGAGCAAAAGCTATCTAATAAGAAGAGCTCTGACATTGAAAATAATTCTATTCCTGTTGAAAATCTCACCGAGGGGAAAAAGAAGAAGAAAAAGAACAAGAAAGCCCAGGAGAGTGAAACAAAAACTGACATGGATGAAACTGTTGACAACATGGAAGATCAGAACGAACCTGGTTTGGAGCAAACCAGTGGCAAGCGATCTAAAGCGAAAACCTATCCAAATGGATTGGTTATCGAGGAGCTAGCTATGGGAAAACCTGATGGCAAGAAAGCTTCTTCGGGAAAAAAGGTTAGTGTTCGCTACATTGGCAAGCTAAAGAATGGCAACATATTTGACTCCAACGTGGGAGGGCCACCTTTCAAATTCCGCTTAGGTCTAGGACAAGTTATACCAGGATGGGATGTCGGGGTTAACGGTATGCGTGTCGGGGATAAAAGAAGACTCACTATTCCACCAGAAATGGGTTATGGACATAAACGTGCCGGTAAAATACCACCGAACTCATGGCTTGTGTTTGATGTTGAGCTGCTCGGTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

482

Amino Acids

53.16

Weight (kDa)

5.17

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPL	PF17800	3 - 96	1.9e-22	Nucleoplasmin-like domain
FKBP_C	PF00254	390 - 478	9.3e-32	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AciI	CCGC	2 cut(s)	431, 1270
AclWI	GGATC	2 cut(s)	213, 328
AcsI	RAATTY	3 cut(s)	59, 562, 1265
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	2 cut(s)	41, 428
AfiI	CCNNNNNNNGG	6 cut(s)	227, 289, 452, 497, 610, 1364
AflIII	ACRYGT	2 cut(s)	423, 439
AgsI	TTSAA	5 cut(s)	832, 889, 941, 962, 1264
AhdI	GACNNNNNGTC	1 cut(s)	355
AjnI	CCWGG	4 cut(s)	28, 1008, 1072, 1294
AluBI	AGCT	9 cut(s)	749, 842, 913, 930, 1144, 1148, 1175, 1216, 1429
AluI	AGCT	9 cut(s)	749, 842, 913, 930, 1144, 1148, 1175, 1216, 1429
Alw21I	GWGCWC	1 cut(s)	932
AlwI	GGATC	2 cut(s)	213, 328
AlwNI	CAGNNNCTG	1 cut(s)	686
AoxI	GGCC	2 cut(s)	97, 1253
ApeKI	GCWGC	3 cut(s)	680, 749, 1429
ApoI	RAATTY	3 cut(s)	59, 562, 1265
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	2 cut(s)	756, 1253
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	6 cut(s)	116, 247, 259, 494, 755, 961
AsuII	TTCGAA	1 cut(s)	63
AsuNHI	GCTAGC	1 cut(s)	1144
AvaII	GGWCC	1 cut(s)	756
BanII	GRGCYC	1 cut(s)	932
BbsI	GAAGAC	2 cut(s)	357, 1348
Bbv12I	GWGCWC	1 cut(s)	932
BbvI	GCAGC	3 cut(s)	692, 736, 1416
BccI	CCATC	6 cut(s)	221, 623, 734, 782, 1157, 1293
BciT130I	CCWGG	4 cut(s)	30, 1010, 1074, 1296
BciVI	GTATCC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	334
BfaI	CTAG	2 cut(s)	1145, 1280
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	3 cut(s)	681, 750, 1430
BlsI	GCNGC	3 cut(s)	682, 751, 1431
Bme1390I	CCNGG	5 cut(s)	30, 334, 1010, 1074, 1296
Bme18I	GGWCC	1 cut(s)	756
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	756, 1253
BmiI	GGNNCC	1 cut(s)	757
BmrFI	CCNGG	5 cut(s)	30, 334, 1010, 1074, 1296
BmsI	GCATC	1 cut(s)	55
BmtI	GCTAGC	1 cut(s)	1148
BpiI	GAAGAC	2 cut(s)	357, 1348
Bpu10I	CCTNAGC	2 cut(s)	843, 1273
Bpu14I	TTCGAA	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	5 cut(s)	100, 201, 333, 972, 1008
Bsc4I	CCNNNNNNNGG	6 cut(s)	227, 289, 452, 497, 610, 1364
Bse118I	RCCGGY	1 cut(s)	1385
Bse1I	ACTGG	1 cut(s)	1089
BseBI	CCWGG	4 cut(s)	30, 1010, 1074, 1296
BseDI	CCNNGG	5 cut(s)	100, 201, 333, 972, 1008
BseGI	GGATG	4 cut(s)	61, 1042, 1304, 1309
BseLI	CCNNNNNNNGG	6 cut(s)	227, 289, 452, 497, 610, 1364
BseMII	CTCAG	3 cut(s)	98, 581, 870
BseNI	ACTGG	1 cut(s)	1089
BseRI	GAGGAG	3 cut(s)	133, 482, 1154
BseXI	GCAGC	3 cut(s)	692, 736, 1416
BseYI	CCCAGC	1 cut(s)	752
BshFI	GGCC	2 cut(s)	99, 1255
BsiHKAI	GWGCWC	1 cut(s)	932
BsiSI	CCGG	2 cut(s)	333, 1386
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	2 cut(s)	182, 587
BslI	CCNNNNNNNGG	6 cut(s)	227, 289, 452, 497, 610, 1364
BsmFI	GGGAC	2 cut(s)	182, 587
BsnI	GGCC	2 cut(s)	99, 1255
Bsp119I	TTCGAA	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	932
Bsp143I	GATC	4 cut(s)	205, 320, 1060, 1100
BspACI	CCGC	2 cut(s)	431, 1270
BspANI	GGCC	2 cut(s)	99, 1255
BspCNI	CTCAG	3 cut(s)	97, 580, 871
BspLI	GGNNCC	1 cut(s)	757
BspOI	GCTAGC	1 cut(s)	1148
BspPI	GGATC	2 cut(s)	213, 328
BspQI	GCTCTTC	2 cut(s)	884, 920
BspT104I	TTCGAA	1 cut(s)	63
BsrFI	RCCGGY	1 cut(s)	1385
BsrI	ACTGG	1 cut(s)	1089
BssAI	RCCGGY	1 cut(s)	1385
BssECI	CCNNGG	5 cut(s)	100, 201, 333, 972, 1008
BssMI	GATC	4 cut(s)	205, 320, 1060, 1100
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	4 cut(s)	30, 1010, 1074, 1296
Bst4CI	ACNGT	4 cut(s)	482, 506, 1045, 1319
Bst6I	CTCTTC	2 cut(s)	884, 920
BstBI	TTCGAA	1 cut(s)	63
BstC8I	GCNNGC	4 cut(s)	840, 1097, 1146, 1214
BstDEI	CTNAG	6 cut(s)	84, 567, 711, 843, 879, 1273
BstEII	GGTNACC	2 cut(s)	235, 278
BstENI	CCTNNNNNAGG	1 cut(s)	287
BstF5I	GGATG	4 cut(s)	61, 1042, 1304, 1309
BstKTI	GATC	4 cut(s)	208, 323, 1063, 1103
BstMBI	GATC	4 cut(s)	205, 320, 1060, 1100
BstMWI	GCNNNNNNNGC	1 cut(s)	1209
BstNI	CCWGG	4 cut(s)	30, 1010, 1074, 1296
BstNSI	RCATGY	2 cut(s)	427, 443
BstPI	GGTNACC	2 cut(s)	235, 278
BstSCI	CCNGG	5 cut(s)	28, 332, 1008, 1072, 1294
BstV1I	GCAGC	3 cut(s)	692, 736, 1416
BstV2I	GAAGAC	2 cut(s)	357, 1348
BstX2I	RGATCY	1 cut(s)	205
BstXI	CCANNNNNNTGG	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	99, 1255
BtsCI	GGATG	4 cut(s)	61, 1042, 1304, 1309
BtsIMutI	CAGTG	2 cut(s)	137, 1096
Cac8I	GCNNGC	4 cut(s)	840, 1097, 1146, 1214
CaiI	CAGNNNCTG	1 cut(s)	686
Cfr10I	RCCGGY	1 cut(s)	1385
Cfr13I	GGNCC	2 cut(s)	756, 1253
CsiI	ACCWGGT	1 cut(s)	1072
Csp6I	GTAC	2 cut(s)	40, 427
CviAII	CATG	7 cut(s)	424, 440, 674, 902, 1033, 1054, 1407
CviQI	GTAC	2 cut(s)	40, 427
DdeI	CTNAG	6 cut(s)	84, 567, 711, 843, 879, 1273
DpnI	GATC	4 cut(s)	207, 322, 1062, 1102
DpnII	GATC	4 cut(s)	205, 320, 1060, 1100
DriI	GACNNNNNGTC	1 cut(s)	355
Eam1104I	CTCTTC	2 cut(s)	884, 920
Eam1105I	GACNNNNNGTC	1 cut(s)	355
EarI	CTCTTC	2 cut(s)	884, 920
Ecl136II	GAGCTC	1 cut(s)	930
Eco130I	CCWWGG	1 cut(s)	201
Eco147I	AGGCCT	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	932
Eco47I	GGWCC	1 cut(s)	756
Eco53kI	GAGCTC	1 cut(s)	930
Eco57I	CTGAAG	1 cut(s)	351
Eco91I	GGTNACC	2 cut(s)	235, 278
EcoICRI	GAGCTC	1 cut(s)	930
EcoNI	CCTNNNNNAGG	1 cut(s)	287
EcoO65I	GGTNACC	2 cut(s)	235, 278
EcoRI	GAATTC	1 cut(s)	59
EcoRII	CCWGG	4 cut(s)	28, 1008, 1072, 1294
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	932
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	7 cut(s)	427, 443, 677, 905, 1036, 1057, 1410
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	2 cut(s)	182, 587
FatI	CATG	7 cut(s)	423, 439, 673, 901, 1032, 1053, 1406
FauI	CCCGC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	681, 750, 1430
FokI	GGATG	4 cut(s)	68, 1049, 1311, 1316
FriOI	GRGCYC	1 cut(s)	932
Fsp4HI	GCNGC	3 cut(s)	681, 750, 1430
FspBI	CTAG	2 cut(s)	1145, 1280
GluI	GCNGC	3 cut(s)	681, 750, 1430
GsaI	CCCAGC	1 cut(s)	756
HaeIII	GGCC	2 cut(s)	99, 1255
HapII	CCGG	2 cut(s)	333, 1386
Hin1II	CATG	7 cut(s)	427, 443, 677, 905, 1036, 1057, 1410
HincII	GTYRAC	2 cut(s)	1048, 1315
HindII	GTYRAC	2 cut(s)	1048, 1315
HindIII	AAGCTT	1 cut(s)	1173
HinfI	GANTC	9 cut(s)	107, 191, 326, 356, 362, 532, 545, 1238, 1344
HpaI	GTTAAC	1 cut(s)	1315
HpaII	CCGG	2 cut(s)	333, 1386
HphI	GGTGA	6 cut(s)	116, 247, 259, 494, 755, 961
Hpy166II	GTNNAC	2 cut(s)	1048, 1315
Hpy188I	TCNGA	7 cut(s)	55, 325, 361, 370, 550, 934, 1065
Hpy188III	TCNNGA	2 cut(s)	209, 1182
Hpy8I	GTNNAC	2 cut(s)	1048, 1315
HpyAV	CCTTC	7 cut(s)	59, 63, 106, 250, 287, 444, 794
HpyCH4III	ACNGT	4 cut(s)	482, 506, 1045, 1319
HpyCH4IV	ACGT	2 cut(s)	1245, 1381
HpyCH4V	TGCA	1 cut(s)	347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1209
HpyF3I	CTNAG	6 cut(s)	84, 567, 711, 843, 879, 1273
HpySE526I	ACGT	2 cut(s)	1245, 1381
Hsp92II	CATG	7 cut(s)	427, 443, 677, 905, 1036, 1057, 1410
KspAI	GTTAAC	1 cut(s)	1315
Kzo9I	GATC	4 cut(s)	205, 320, 1060, 1100
LguI	GCTCTTC	2 cut(s)	884, 920
LmnI	GCTCC	2 cut(s)	1081, 1141
Lsp1109I	GCAGC	3 cut(s)	692, 736, 1416
LweI	GCATC	1 cut(s)	55
MabI	ACCWGGT	1 cut(s)	1072
MaeI	CTAG	2 cut(s)	1145, 1280
MaeII	ACGT	2 cut(s)	1245, 1381
MaeIII	GTNAC	3 cut(s)	174, 235, 278
MalI	GATC	4 cut(s)	207, 322, 1062, 1102
MboI	GATC	4 cut(s)	205, 320, 1060, 1100
MfeI	CAATTG	1 cut(s)	1441
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	1 cut(s)	932
MlyI	GAGTC	5 cut(s)	365, 371, 539, 1232, 1338
MmeI	TCCRAC	2 cut(s)	376, 1266
MroXI	GAANNNNTTC	1 cut(s)	777
MseI	TTAA	1 cut(s)	1314
MslI	CAYNNNNRTG	1 cut(s)	1380
MspI	CCGG	2 cut(s)	333, 1386
MspR9I	CCNGG	5 cut(s)	30, 334, 1010, 1074, 1296
MunI	CAATTG	1 cut(s)	1441
MvaI	CCWGG	4 cut(s)	30, 1010, 1074, 1296
MwoI	GCNNNNNNNGC	1 cut(s)	1209
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	4 cut(s)	205, 320, 1060, 1100
NheI	GCTAGC	1 cut(s)	1144
NlaIII	CATG	7 cut(s)	427, 443, 677, 905, 1036, 1057, 1410
NlaIV	GGNNCC	1 cut(s)	757
NmuCI	GTSAC	1 cut(s)	235
NspI	RCATGY	2 cut(s)	427, 443
NspV	TTCGAA	1 cut(s)	63
PceI	AGGCCT	1 cut(s)	99
PciI	ACATGT	2 cut(s)	423, 439
PciSI	GCTCTTC	2 cut(s)	884, 920
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	4 cut(s)	107, 191, 326, 532
Pfl23II	CGTACG	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	682, 751, 1431
PleI	GAGTC	5 cut(s)	364, 370, 539, 1232, 1338
PpsI	GAGTC	5 cut(s)	364, 370, 539, 1232, 1338
PscI	ACATGT	2 cut(s)	423, 439
Psp124BI	GAGCTC	1 cut(s)	932
Psp6I	CCWGG	4 cut(s)	28, 1008, 1072, 1294
PspEI	GGTNACC	2 cut(s)	235, 278
PspFI	CCCAGC	1 cut(s)	752
PspGI	CCWGG	4 cut(s)	28, 1008, 1072, 1294
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	757
PspPI	GGNCC	2 cut(s)	756, 1253
PstNI	CAGNNNCTG	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	41, 428
RsaNI	GTAC	2 cut(s)	40, 427
RseI	CAYNNNNRTG	1 cut(s)	1380
SacI	GAGCTC	1 cut(s)	932
SapI	GCTCTTC	2 cut(s)	884, 920
SaqAI	TTAA	1 cut(s)	1314
SatI	GCNGC	3 cut(s)	681, 750, 1430
Sau3AI	GATC	4 cut(s)	205, 320, 1060, 1100
Sau96I	GGNCC	2 cut(s)	756, 1253
SchI	GAGTC	5 cut(s)	365, 371, 539, 1232, 1338
ScrFI	CCNGG	5 cut(s)	30, 334, 1010, 1074, 1296
SduI	GDGCHC	1 cut(s)	932
SexAI	ACCWGGT	1 cut(s)	1072
SfaNI	GCATC	1 cut(s)	55
SfuI	TTCGAA	1 cut(s)	63
SinI	GGWCC	1 cut(s)	756
SmiMI	CAYNNNNRTG	1 cut(s)	1380
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	2 cut(s)	431, 1270
SspMI	CTAG	2 cut(s)	1145, 1280
SstI	GAGCTC	1 cut(s)	932
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	5 cut(s)	28, 332, 1008, 1072, 1294
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	4 cut(s)	482, 506, 1045, 1319
TaiI	ACGT	2 cut(s)	1248, 1384
TaqI	TCGA	5 cut(s)	63, 110, 539, 771, 1137
TfiI	GAWTC	4 cut(s)	107, 191, 326, 532
Tru1I	TTAA	1 cut(s)	1314
Tru9I	TTAA	1 cut(s)	1314
TscAI	CASTG	2 cut(s)	137, 1096
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	3 cut(s)	680, 749, 1429
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	8 cut(s)	72, 204, 318, 426, 639, 690, 882, 1053
TspRI	CASTG	2 cut(s)	137, 1096
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	287
XapI	RAATTY	3 cut(s)	59, 562, 1265
XceI	RCATGY	2 cut(s)	427, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1404
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	2 cut(s)	1145, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.