Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009413

Physical Location & Seq

Genomic Coordinates Reverse (-)

1604040 .. 1604823

Gene Structure 784 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCCCCATCTGAATCTGCTAAGAAGAATGAGAAGATAAGTGAGGAAGCTACAGTGGAGAGTAAAGCCTTTTCTATTAGTGTTGAGAAGCAAACGCCTGACCTAGATGGCCTCATTGTTGAAGAGTTATGCATGGGAAACCCCAACGGCAAGAAAGCTGAGCCTGGCAAAAGGGTAAGTGTCCATTATACTGGAAAGCTTCAGGGGAATGGGAAGATTTTCGATTCCACCGTTGGAAAATCACGTTATAAGTTTCGTCTAGATGCTGGAAAAGTCATTAAGGGATTGGATGTTGGCCTTAATGGAATGCTTGTTGGTGGCAAAAGAAAGCTTACAATTCCTCCAGAAATGGGGTATGGTGCGGAAGGTGCTGGTAGCATTCCCCCTGACTCTTGGCTGGTCTTTGATGTCGAGCTGCTTAATGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0031497 GO:0031974 GO:0031981 GO:0034622 GO:0034728 GO:0042393 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0051276 GO:0065003 GO:0065004 GO:0070013 GO:0071103 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FKBP_C

Protein Analysis

143

Amino Acids

15.34

Weight (kDa)

8.59

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	51 - 140	7.8e-33	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009413)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25340 AT4G25340 AT5G05420
fragaria_vesca	FvH4_7g28142 FvH4_7g28142 FvH4_7g28142
malus_domestica	MD01G1185400.v1.1 MD07G1257600.v1.1
prunus_persica	Prupe.2G281800_v2.0.a1
pyrus_communis	pycom01g19700 pycom07g23060
rosa_chinensis	RchiOBHm_Chr1g0375081
rosa_laevigata	RLG00000026689
rosa_multiflora	Rmu_co8303027.1_g000001 Rmu_sc0000554.1_g000016
rosa_roxburghii	Rroxscaffold_4G00283030
rosa_rugosa	Rorug01G0388200
rosa_samantha	Rh1AG398700 Rh1BG365800 Rh1CG378700 Rh1DG396500
rosa_wichuraiana	Rw1G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AciI	CCGC	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	122
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	5 cut(s)	50, 158, 199, 331, 415
AluI	AGCT	5 cut(s)	50, 158, 199, 331, 415
AoxI	GGCC	2 cut(s)	109, 295
ApeKI	GCWGC	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	402
BccI	CCATC	2 cut(s)	16, 101
BceAI	ACGGC	1 cut(s)	163
BciT130I	CCWGG	1 cut(s)	165
BfaI	CTAG	2 cut(s)	104, 260
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	416
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	1 cut(s)	165
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	253
BpmI	CTGGAG	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	159
BsaXI	ACNNNNNCTCC	2 cut(s)	325, 355
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	196
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	402
BshFI	GGCC	2 cut(s)	111, 297
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmI	GAATGC	2 cut(s)	312, 378
BsnI	GGCC	2 cut(s)	111, 297
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	2 cut(s)	111, 297
BspCNI	CTCAG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	55, 232
Bst6I	CTCTTC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	21, 159
BstF5I	GGATG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	111, 297
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	1 cut(s)	60
CviAII	CATG	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	21, 159
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	163
EcoT22I	ATGCAT	1 cut(s)	134
FaeI	CATG	1 cut(s)	136
FaiI	YATR	5 cut(s)	130, 134, 189, 249, 357
FatI	CATG	1 cut(s)	132
Fnu4HI	GCNGC	1 cut(s)	416
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	1 cut(s)	416
FspBI	CTAG	2 cut(s)	104, 260
GluI	GCNGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	111, 297
Hin1II	CATG	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	197, 329
HinfI	GANTC	3 cut(s)	14, 224, 389
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	260, 344
HpyAV	CCTTC	1 cut(s)	359
HpyCH4III	ACNGT	2 cut(s)	55, 232
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	132
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	21, 159
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	104, 260
MaeII	ACGT	1 cut(s)	244
MboII	GAAGA	4 cut(s)	37, 46, 134, 226
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	214
MnlI	CCTC	3 cut(s)	37, 122, 351
Mph1103I	ATGCAT	1 cut(s)	134
MroXI	GAANNNNTTC	1 cut(s)	218
MseI	TTAA	4 cut(s)	279, 300, 420, 426
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	2 cut(s)	312, 378
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	368
NlaIII	CATG	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	228
PctI	GAATGC	2 cut(s)	312, 378
PdmI	GAANNNNTTC	1 cut(s)	218
PfeI	GAWTC	2 cut(s)	14, 224
PkrI	GCNGC	1 cut(s)	417
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PsiI	TTATAA	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
SaqAI	TTAA	4 cut(s)	279, 300, 420, 426
SatI	GCNGC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	8 cut(s)	52, 105, 160, 201, 247, 333, 370, 417
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	362
SspMI	CTAG	2 cut(s)	104, 260
StyD4I	CCNGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	55, 232
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	222, 411
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	14, 224
Tru1I	TTAA	4 cut(s)	279, 300, 420, 426
Tru9I	TTAA	4 cut(s)	279, 300, 420, 426
TscAI	CASTG	1 cut(s)	60
TseI	GCWGC	1 cut(s)	415
TspRI	CASTG	1 cut(s)	60
XbaI	TCTAGA	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	104, 260
Zsp2I	ATGCAT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.