Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Forward (+)

13138957 .. 13141097

Gene Structure 2141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G25840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTAACAACTCCGACAAGATTCGTTGCTCTAAGAATCCCATTCCGATCTTCCAATAAGATTCCGATCTCCATTGCTCCCTCTCCCAAAGTTTTTCCTCGGAAACCAGTTATCAGAGTTCCAGCAAGTCTCCGATTTGTAGCGACGATGTCGACCCCTGCCGCCGCCGTCAACGCCACCGTCACAGTCACCGATGCCGGCAGAGGATCGATCACTCACGTCATATTCGACATGGATGGTCTCCTTCTCGACACGGAGAAGTTTTACACGGAGGTCCAGGAAAAGATACTTGCTAGATACAATAAAACATTTGATTGGTCTTTGAAAGCAAAGATGATGGGGAGAAAAGCCATAGAAGCTGCAAGGCTTTTCGTTGACGAAAGTGGAATCAGTGACTCTCTTTCTGCTGAAGATTTCATTGTAGAAAGAGAGTCAATGTTGCAAGACCTCTTCCCCACAAGTGACCTAATGCCAGGAGCTAGCCGGCTTCTTAGACATCTCCATGGGAAAGGAATTCCAATATGTATAGCCACAGGTACACATACACGACATTTTGATCTTAAAACACAAAGACACCGTGAGCTTTTTTCGCTTATGCATCACGTAGTACGGGGGGATGACCCAGAGGTGAAGGAAGGGAAGCCCGCGCCAGACGGCTTTCTTGCTGCATCCAGGAGATTTGAGGACGGTCCTGTAGATCCACGCAAGGTTCTCGTGTTTGAAGATGCGCCTTCTGGAGTCCAGGCAGCTAAAAACGCCGGAATGAATGTAATAATGGTACCGGATTCAAGGTTAGATAAGTCCTACTGCAATGTTGCAGACCAAGTTCTGGCCTCTCTGCTAGATTTCAAACCAGAGGAATGGGGCTTACCTTCCTTCCAGGATTCACACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

298

Amino Acids

33.07

Weight (kDa)

7.83

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	72 - 254	1.3e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	74 - 260	5.8e-20	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	778
AccB7I	CCANNNNNTGG	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	152
AccII	CGCG	1 cut(s)	647
AciI	CCGC	3 cut(s)	162, 165, 645
AclWI	GGATC	2 cut(s)	214, 692
AcsI	RAATTY	1 cut(s)	513
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	538, 609, 780
AfiI	CCNNNNNNNGG	1 cut(s)	829
AgsI	TTSAA	4 cut(s)	325, 722, 789, 850
AjiI	CACGTC	1 cut(s)	220
AjnI	CCWGG	5 cut(s)	276, 472, 671, 741, 879
AluBI	AGCT	4 cut(s)	359, 479, 583, 749
AluI	AGCT	4 cut(s)	359, 479, 583, 749
Alw26I	GTCTC	2 cut(s)	134, 245
AlwI	GGATC	2 cut(s)	214, 692
AoxI	GGCC	1 cut(s)	831
ApeKI	GCWGC	3 cut(s)	359, 665, 746
ApoI	RAATTY	1 cut(s)	513
Asp718I	GGTACC	1 cut(s)	778
AspLEI	GCGC	2 cut(s)	649, 730
AspS9I	GGNCC	2 cut(s)	274, 689
AsuHPI	GGTGA	2 cut(s)	181, 640
AsuNHI	GCTAGC	1 cut(s)	479
AvaII	GGWCC	2 cut(s)	274, 689
BanI	GGYRCC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	713
BbvI	GCAGC	3 cut(s)	346, 652, 758
BccI	CCATC	2 cut(s)	230, 331
BceAI	ACGGC	2 cut(s)	152, 670
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	5 cut(s)	278, 474, 673, 743, 881
BcoDI	GTCTC	2 cut(s)	134, 245
BfaI	CTAG	3 cut(s)	294, 480, 842
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	5 cut(s)	162, 165, 360, 666, 747
BlsI	GCNGC	5 cut(s)	163, 166, 361, 667, 748
Bme1390I	CCNGG	5 cut(s)	278, 474, 673, 743, 881
Bme18I	GGWCC	2 cut(s)	274, 689
BmgBI	CACGTC	1 cut(s)	220
BmgT120I	GGNCC	2 cut(s)	274, 689
BmiI	GGNNCC	1 cut(s)	780
BmrFI	CCNGG	5 cut(s)	278, 474, 673, 743, 881
BmsI	GCATC	4 cut(s)	184, 607, 677, 715
BmtI	GCTAGC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	756
Bsa29I	ATCGAT	1 cut(s)	209
BsaAI	YACGTR	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	98, 502
BsaWI	WCCGGW	1 cut(s)	781
Bsc4I	CCNNNNNNNGG	1 cut(s)	829
Bse118I	RCCGGY	2 cut(s)	197, 483
Bse1I	ACTGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	72, 817
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	5 cut(s)	278, 474, 673, 743, 881
BseCI	ATCGAT	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	98, 502
BseGI	GGATG	3 cut(s)	241, 622, 668
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	829
BseMI	GCAATG	2 cut(s)	72, 817
BseNI	ACTGG	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	346, 652, 758
Bsh1236I	CGCG	1 cut(s)	647
BshFI	GGCC	1 cut(s)	833
BshNI	GGYRCC	1 cut(s)	778
BshVI	ATCGAT	1 cut(s)	209
BsiSI	CCGG	4 cut(s)	198, 484, 759, 782
BslI	CCNNNNNNNGG	1 cut(s)	829
BsmAI	GTCTC	2 cut(s)	134, 245
BsnI	GGCC	1 cut(s)	833
Bso31I	GGTCTC	1 cut(s)	245
Bsp143I	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
Bsp19I	CCATGG	1 cut(s)	502
BspACI	CCGC	3 cut(s)	162, 165, 645
BspANI	GGCC	1 cut(s)	833
BspDI	ATCGAT	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	647
BspLI	GGNNCC	1 cut(s)	780
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	2 cut(s)	214, 692
BspT107I	GGYRCC	1 cut(s)	778
BspTNI	GGTCTC	1 cut(s)	245
BsrDI	GCAATG	2 cut(s)	72, 817
BsrFI	RCCGGY	2 cut(s)	197, 483
BsrI	ACTGG	1 cut(s)	107
BssAI	RCCGGY	2 cut(s)	197, 483
BssECI	CCNNGG	2 cut(s)	98, 502
BssMI	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
BssSI	CACGAG	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	502
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	5 cut(s)	278, 474, 673, 743, 881
Bst4CI	ACNGT	4 cut(s)	181, 187, 578, 689
Bst6I	CTCTTC	1 cut(s)	455
BstBAI	YACGTR	1 cut(s)	604
BstC8I	GCNNGC	4 cut(s)	199, 481, 485, 645
BstDEI	CTNAG	2 cut(s)	32, 491
BstDSI	CCRYGG	1 cut(s)	502
BstF5I	GGATG	3 cut(s)	241, 622, 668
BstFNI	CGCG	1 cut(s)	647
BstHHI	GCGC	2 cut(s)	649, 730
BstKTI	GATC	6 cut(s)	50, 69, 209, 213, 559, 700
BstMAI	GTCTC	2 cut(s)	134, 245
BstMBI	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 356, 589, 755
BstNI	CCWGG	5 cut(s)	278, 474, 673, 743, 881
BstSCI	CCNGG	5 cut(s)	276, 472, 671, 741, 879
BstSFI	CTRYAG	1 cut(s)	693
BstUI	CGCG	1 cut(s)	647
BstV1I	GCAGC	3 cut(s)	346, 652, 758
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	697
Bsu15I	ATCGAT	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	833
BsuTUI	ATCGAT	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	502
BtrI	CACGTC	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	241, 622, 668
BtsIMutI	CAGTG	1 cut(s)	397
Cac8I	GCNNGC	4 cut(s)	199, 481, 485, 645
CfoI	GCGC	2 cut(s)	649, 730
Cfr10I	RCCGGY	2 cut(s)	197, 483
Cfr13I	GGNCC	2 cut(s)	274, 689
ClaI	ATCGAT	1 cut(s)	209
Csp6I	GTAC	3 cut(s)	537, 608, 779
CviAII	CATG	2 cut(s)	232, 503
CviQI	GTAC	3 cut(s)	537, 608, 779
DdeI	CTNAG	2 cut(s)	32, 491
DpnI	GATC	6 cut(s)	49, 68, 208, 212, 558, 699
DpnII	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
Eam1104I	CTCTTC	1 cut(s)	455
EarI	CTCTTC	1 cut(s)	455
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	1 cut(s)	245
Eco47I	GGWCC	2 cut(s)	274, 689
Eco57I	CTGAAG	1 cut(s)	429
EcoRI	GAATTC	1 cut(s)	513
EcoRII	CCWGG	5 cut(s)	276, 472, 671, 741, 879
EcoT14I	CCWWGG	1 cut(s)	502
EcoT22I	ATGCAT	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	2 cut(s)	235, 506
FaiI	YATR	8 cut(s)	224, 233, 353, 504, 523, 527, 543, 596
FatI	CATG	2 cut(s)	231, 502
FauI	CCCGC	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	5 cut(s)	162, 165, 360, 666, 747
FokI	GGATG	3 cut(s)	248, 629, 655
Fsp4HI	GCNGC	5 cut(s)	162, 165, 360, 666, 747
FspBI	CTAG	3 cut(s)	294, 480, 842
GlaI	GCGC	2 cut(s)	648, 729
GluI	GCNGC	5 cut(s)	162, 165, 360, 666, 747
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	1 cut(s)	833
HapII	CCGG	4 cut(s)	198, 484, 759, 782
HhaI	GCGC	2 cut(s)	649, 730
Hin1II	CATG	2 cut(s)	235, 506
Hin6I	GCGC	2 cut(s)	647, 728
HinP1I	GCGC	2 cut(s)	647, 728
HincII	GTYRAC	4 cut(s)	6, 153, 172, 376
HindII	GTYRAC	4 cut(s)	6, 153, 172, 376
HinfI	GANTC	9 cut(s)	21, 36, 61, 387, 395, 431, 738, 785, 884
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	4 cut(s)	198, 484, 759, 782
HphI	GGTGA	2 cut(s)	181, 640
Hpy166II	GTNNAC	5 cut(s)	6, 153, 172, 376, 539
Hpy188I	TCNGA	6 cut(s)	15, 47, 66, 102, 116, 134
Hpy188III	TCNNGA	2 cut(s)	248, 735
Hpy8I	GTNNAC	5 cut(s)	6, 153, 172, 376, 539
Hpy99I	CGWCG	1 cut(s)	148
HpyAV	CCTTC	6 cut(s)	254, 625, 629, 741, 882, 886
HpyCH4III	ACNGT	4 cut(s)	181, 187, 578, 689
HpyCH4IV	ACGT	2 cut(s)	219, 603
HpyCH4V	TGCA	6 cut(s)	362, 442, 598, 668, 810, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 356, 589, 755
HpyF3I	CTNAG	2 cut(s)	32, 491
HpySE526I	ACGT	2 cut(s)	219, 603
Hsp92II	CATG	2 cut(s)	235, 506
HspAI	GCGC	2 cut(s)	647, 728
KpnI	GGTACC	1 cut(s)	782
KroI	GCCGGC	2 cut(s)	197, 483
KroNI	GCCGGC	2 cut(s)	199, 485
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
LmnI	GCTCC	2 cut(s)	82, 476
Lsp1109I	GCAGC	3 cut(s)	346, 652, 758
LweI	GCATC	4 cut(s)	184, 607, 677, 715
MaeI	CTAG	3 cut(s)	294, 480, 842
MaeII	ACGT	2 cut(s)	219, 603
MaeIII	GTNAC	4 cut(s)	181, 187, 392, 461
MalI	GATC	6 cut(s)	49, 68, 208, 212, 558, 699
MboI	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
MboII	GAAGA	4 cut(s)	42, 422, 442, 734
MflI	RGATCY	1 cut(s)	697
MluCI	AATT	1 cut(s)	513
MlyI	GAGTC	3 cut(s)	389, 440, 747
MmeI	TCCRAC	1 cut(s)	38
MnlI	CCTC	9 cut(s)	91, 108, 197, 265, 458, 619, 676, 844, 850
Mph1103I	ATGCAT	1 cut(s)	600
MroNI	GCCGGC	2 cut(s)	197, 483
MseI	TTAA	2 cut(s)	5, 561
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	4 cut(s)	198, 484, 759, 782
MspR9I	CCNGG	5 cut(s)	278, 474, 673, 743, 881
MvaI	CCWGG	5 cut(s)	278, 474, 673, 743, 881
MvnI	CGCG	1 cut(s)	647
MwoI	GCNNNNNNNGC	4 cut(s)	173, 356, 589, 755
NaeI	GCCGGC	2 cut(s)	199, 485
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
NgoMIV	GCCGGC	2 cut(s)	197, 483
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	2 cut(s)	235, 506
NlaIV	GGNNCC	1 cut(s)	780
NmuCI	GTSAC	4 cut(s)	181, 187, 392, 461
NsiI	ATGCAT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdiI	GCCGGC	2 cut(s)	199, 485
PfeI	GAWTC	6 cut(s)	21, 36, 61, 387, 785, 884
PflFI	GACNNNGTC	1 cut(s)	148
PflMI	CCANNNNNTGG	1 cut(s)	829
PfoI	TCCNGGA	3 cut(s)	276, 671, 879
PkrI	GCNGC	5 cut(s)	163, 166, 361, 667, 748
PleI	GAGTC	3 cut(s)	389, 439, 746
PpsI	GAGTC	3 cut(s)	389, 439, 746
Ppu21I	YACGTR	1 cut(s)	604
Psp6I	CCWGG	5 cut(s)	276, 472, 671, 741, 879
PspGI	CCWGG	5 cut(s)	276, 472, 671, 741, 879
PspN4I	GGNNCC	1 cut(s)	780
PspPI	GGNCC	2 cut(s)	274, 689
PsuI	RGATCY	1 cut(s)	697
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	3 cut(s)	538, 609, 780
RsaNI	GTAC	3 cut(s)	537, 608, 779
RseI	CAYNNNNRTG	1 cut(s)	501
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	5, 561
SatI	GCNGC	5 cut(s)	162, 165, 360, 666, 747
Sau3AI	GATC	6 cut(s)	47, 66, 206, 210, 556, 697
Sau96I	GGNCC	2 cut(s)	274, 689
SchI	GAGTC	3 cut(s)	389, 440, 747
ScrFI	CCNGG	5 cut(s)	278, 474, 673, 743, 881
SfaNI	GCATC	4 cut(s)	184, 607, 677, 715
SfcI	CTRYAG	1 cut(s)	693
SinI	GGWCC	2 cut(s)	274, 689
SmiMI	CAYNNNNRTG	1 cut(s)	501
Sse9I	AATT	1 cut(s)	513
SsiI	CCGC	3 cut(s)	162, 165, 645
SspMI	CTAG	3 cut(s)	294, 480, 842
StyD4I	CCNGG	5 cut(s)	276, 472, 671, 741, 879
StyI	CCWWGG	1 cut(s)	502
TaaI	ACNGT	4 cut(s)	181, 187, 578, 689
TaiI	ACGT	2 cut(s)	222, 606
TaqI	TCGA	4 cut(s)	152, 209, 228, 249
TasI	AATT	1 cut(s)	513
TauI	GCSGC	2 cut(s)	164, 167
TfiI	GAWTC	6 cut(s)	21, 36, 61, 387, 785, 884
Tru1I	TTAA	2 cut(s)	5, 561
Tru9I	TTAA	2 cut(s)	5, 561
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	4 cut(s)	181, 187, 392, 461
TseI	GCWGC	3 cut(s)	359, 665, 746
Tsp45I	GTSAC	4 cut(s)	181, 187, 392, 461
TspDTI	ATGAA	2 cut(s)	406, 779
TspGWI	ACGGA	2 cut(s)	269, 284
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	1 cut(s)	148
Van91I	CCANNNNNTGG	1 cut(s)	829
VpaK11BI	GGWCC	2 cut(s)	274, 689
XapI	RAATTY	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	3 cut(s)	294, 480, 842
Zsp2I	ATGCAT	1 cut(s)	600

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.