Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

5306299 .. 5308344

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0035600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGGACGTTGAGACCGATGTGGCGGCAGCCGGAGTCCCGAAGAAGAGAACGTTCAAGAAGTTCAGCTTCAGAGGCGTCGATCTCGATGCACTCCTCGACATGTCCACTGACGAACTCGTCAAGCTCTTCCCTGCTCGAGCTCGCAGAAGGTTCCAGAGGGGTCTGAAGCGCAAGCCCATGGCTTTGATCAAGAAGCTTCGCAAAGCCAAAAGGGAGGCTCCACCTGGTGAGAAGCCAGAGCCAGTTCGTACCCATCTGCGTAACATGATTATAGTACCAGAAATGATAGGAAGCGTTATTGGTGTGTACAATGGAAAGACCTTCAATCAGGTTGAAATCAAGCCCGAGATGATCAGTCACTACCTTGCTGAGTTCTCAATTTCATACAAGCCCGTCAAGCACGGTAGACCTGGTATTGGTGCCACCCACTCTTCAAGGTTCATTCCTCTGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

152

Amino Acids

17.2

Weight (kDa)

10.44

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S19	PF00203	50 - 135	3e-33	Ribosomal protein S19

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	409
AciI	CCGC	2 cut(s)	5, 26
AclI	AACGTT	1 cut(s)	53
AcuI	CTGAAG	2 cut(s)	55, 188
AcyI	GRCGYC	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	230
AfaI	GTAC	3 cut(s)	253, 279, 311
AfiI	CCNNNNNNNGG	1 cut(s)	419
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	4 cut(s)	58, 328, 338, 438
AjnI	CCWGG	2 cut(s)	226, 412
AluBI	AGCT	4 cut(s)	69, 127, 143, 199
AluI	AGCT	4 cut(s)	69, 127, 143, 199
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	8
Ama87I	CYCGRG	2 cut(s)	138, 347
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	174
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	2 cut(s)	138, 347
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	2 cut(s)	228, 414
BclI	TGATCA	2 cut(s)	189, 354
BcoDI	GTCTC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	2 cut(s)	228, 414
BmeT110I	CYCGRG	2 cut(s)	138, 347
BmiI	GGNNCC	3 cut(s)	155, 222, 424
BmrFI	CCNGG	2 cut(s)	228, 414
BmsI	GCATC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	2 cut(s)	228, 414
BseDI	CCNNGG	1 cut(s)	180
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	41
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	145
BsiHKCI	CYCGRG	2 cut(s)	138, 347
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	419
BsmAI	GTCTC	1 cut(s)	8
BsmFI	GGGAC	1 cut(s)	23
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	2 cut(s)	138, 347
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp1407I	TGTACA	1 cut(s)	309
Bsp143I	GATC	3 cut(s)	82, 189, 354
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	5, 26
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	155, 222, 424
BspQI	GCTCTTC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	3 cut(s)	82, 189, 354
BssNI	GRCGYC	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	2 cut(s)	228, 414
Bst4CI	ACNGT	1 cut(s)	407
Bst6I	CTCTTC	3 cut(s)	41, 134, 439
BstACI	GRCGYC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	309
BstC8I	GCNNGC	2 cut(s)	145, 176
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	85, 192, 357
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	3 cut(s)	82, 189, 354
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 400
BstNI	CCWGG	2 cut(s)	228, 414
BstNSI	RCATGY	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	226, 412
BstV1I	GCAGC	1 cut(s)	41
BtgI	CCRYGG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	145, 176
CfoI	GCGC	1 cut(s)	174
CseI	GACGC	1 cut(s)	67
CsiI	ACCWGGT	2 cut(s)	226, 412
Csp6I	GTAC	3 cut(s)	252, 278, 310
CviAII	CATG	3 cut(s)	103, 181, 268
CviQI	GTAC	3 cut(s)	252, 278, 310
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	84, 191, 356
DpnII	GATC	3 cut(s)	82, 189, 354
DraIII	CACNNNGTG	1 cut(s)	230
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
Eam1104I	CTCTTC	3 cut(s)	41, 134, 439
EarI	CTCTTC	3 cut(s)	41, 134, 439
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	8
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	55, 188
Eco88I	CYCGRG	2 cut(s)	138, 347
EcoICRI	GAGCTC	1 cut(s)	143
EcoRII	CCWGG	2 cut(s)	226, 412
EcoT14I	CCWWGG	1 cut(s)	180
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	106, 184, 271
FaiI	YATR	5 cut(s)	104, 182, 269, 275, 388
FalI	AAGNNNNNCTT	2 cut(s)	53, 85
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	3 cut(s)	102, 180, 267
FbaI	TGATCA	2 cut(s)	189, 354
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	2 cut(s)	27, 30
FriOI	GRGCYC	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	27, 30
GlaI	GCGC	1 cut(s)	173
GluI	GCNGC	2 cut(s)	27, 30
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	174
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	106, 184, 271
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	108, 310, 410
Hpy188I	TCNGA	3 cut(s)	74, 168, 453
Hpy188III	TCNNGA	5 cut(s)	40, 58, 86, 157, 193
Hpy8I	GTNNAC	3 cut(s)	108, 310, 410
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	2 cut(s)	144, 334
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4IV	ACGT	2 cut(s)	9, 53
HpyCH4V	TGCA	1 cut(s)	92
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 400
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	2 cut(s)	9, 53
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	106, 184, 271
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	2 cut(s)	189, 354
Kzo9I	GATC	3 cut(s)	82, 189, 354
LguI	GCTCTTC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	79
MabI	ACCWGGT	2 cut(s)	226, 412
MaeII	ACGT	2 cut(s)	9, 53
MaeIII	GTNAC	2 cut(s)	263, 359
MalI	GATC	3 cut(s)	84, 191, 356
MboI	GATC	3 cut(s)	82, 189, 354
MboII	GAAGA	4 cut(s)	55, 58, 121, 426
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	5 cut(s)	68, 107, 153, 211, 459
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	2 cut(s)	228, 414
MvaI	CCWGG	2 cut(s)	228, 414
MwoI	GCNNNNNNNGC	2 cut(s)	75, 400
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	82, 189, 354
NlaIII	CATG	3 cut(s)	106, 184, 271
NlaIV	GGNNCC	3 cut(s)	155, 222, 424
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	106
PaeR7I	CTCGAG	1 cut(s)	138
PciI	ACATGT	1 cut(s)	102
PciSI	GCTCTTC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PscI	ACATGT	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	226, 412
PspGI	CCWGG	2 cut(s)	226, 412
PspN4I	GGNNCC	3 cut(s)	155, 222, 424
PspXI	VCTCGAGB	1 cut(s)	138
RsaI	GTAC	3 cut(s)	253, 279, 311
RsaNI	GTAC	3 cut(s)	252, 278, 310
SacI	GAGCTC	1 cut(s)	145
SapI	GCTCTTC	1 cut(s)	134
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	3 cut(s)	82, 189, 354
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	228, 414
SduI	GDGCHC	1 cut(s)	145
SexAI	ACCWGGT	2 cut(s)	226, 412
SfaNI	GCATC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
Sse9I	AATT	1 cut(s)	381
SsiI	CCGC	2 cut(s)	5, 26
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	2 cut(s)	226, 412
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	407
TaiI	ACGT	2 cut(s)	12, 56
TaqI	TCGA	4 cut(s)	81, 87, 99, 139
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	1 cut(s)	381
TatI	WGTACW	1 cut(s)	309
TauI	GCSGC	1 cut(s)	29
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	375, 433
TspRI	CASTG	1 cut(s)	115
XceI	RCATGY	1 cut(s)	106
XhoI	CTCGAG	1 cut(s)	138
XmiI	GTMKAC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.