Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

8048508 .. 8053489

Gene Structure 4982 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGCCAAGAATCCTTTGCCAGCGACTAGCCTTCCCAATTCCCATAGCCAGTACTACATCACCAAAACACTTCCTTCACTTCTCCACCAAATCTCTCAACTTCCCCAAAAACCCAAGACCTCATTTGGCCATGGCTAATCCCTCTGCACCCAGACCATCAATCACCCATGTCATTTTCGATATGGACGGCCTCTTACTCGACACAGAGAAGTTTTATACTGAAGTCCAGGAAATTATACTTGCTAGGTTTAATAAAACCTTTGATTGGGATCTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGAGACTGGAATTAGTGACTCTCTTACGGCTGAGGCCTTTCTAGTTGAAAGGGAGGCAATGCTGCAGAAATTGTTTCCAACAAGTGAGCTGATGCCAGGAGCCAGCAGGTTGATCAGACATCTACATGCAAAAGCAATACCCTTTTGCTTGGCAACAGGCTCTAATAAGCGACATTTCGAATTGAAAACACAAAGCCATCGTGAACTTTTTTCATTGATGCATCATGTTGTCAACGGTGACGACCCAGAAATTAAACAAGGCAAACCCTCACCAGATATTTTCCTTGCAGCGTCCAAACGCTTTGAGGGTGGGCCAATAGATCCAAGTAAATGCCTTGTGTTCGAAGATGCACCCTCTGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTAATGGTTCCCGATCCAAGGTTGGACAGCTCTTATCATGATGCTGCAGACCAAGTTTTGGGGTCCTTGTTGGATTTAAACCCAAGTGATTGGGGTTTGCCTCCATTCGACAATTCAGCGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

282

Amino Acids

31.13

Weight (kDa)

6.6

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	55 - 237	4.4e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	57 - 243	2.8e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB7I	CCANNNNNTGG	1 cut(s)	778
AclWI	GGATC	3 cut(s)	276, 641, 728
AcoI	YGGCCR	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	1 cut(s)	52
AfiI	CCNNNNNNNGG	3 cut(s)	264, 738, 778
AgsI	TTSAA	3 cut(s)	326, 374, 511
AjnI	CCWGG	2 cut(s)	225, 421
AluBI	AGCT	5 cut(s)	308, 415, 698, 750, 843
AluI	AGCT	5 cut(s)	308, 415, 698, 750, 843
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	3 cut(s)	276, 641, 728
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	4 cut(s)	126, 187, 360, 638
ApeKI	GCWGC	5 cut(s)	308, 388, 614, 695, 764
AspS9I	GGNCC	2 cut(s)	638, 783
AsuHPI	GGTGA	4 cut(s)	51, 154, 575, 588
AsuII	TTCGAA	2 cut(s)	504, 669
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	783
BalI	TGGCCA	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	5 cut(s)	295, 375, 626, 707, 751
BccI	CCATC	3 cut(s)	163, 280, 531
BceAI	ACGGC	2 cut(s)	202, 369
BciT130I	CCWGG	2 cut(s)	227, 423
BclI	TGATCA	1 cut(s)	438
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	26, 243, 368
BfmI	CTRYAG	2 cut(s)	389, 765
BfuAI	ACCTGC	1 cut(s)	423
BisI	GCNGC	5 cut(s)	309, 389, 615, 696, 765
BlsI	GCNGC	5 cut(s)	310, 390, 616, 697, 766
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	227, 423
Bme18I	GGWCC	1 cut(s)	783
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	2 cut(s)	638, 783
BmiI	GGNNCC	3 cut(s)	427, 729, 784
BmrFI	CCNGG	2 cut(s)	227, 423
BmsI	GCATC	5 cut(s)	408, 534, 556, 664, 751
BpmI	CTGGAG	1 cut(s)	705
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu14I	TTCGAA	2 cut(s)	504, 669
BsaBI	GATNNNNATC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	129, 737
Bsc4I	CCNNNNNNNGG	3 cut(s)	264, 738, 778
Bse1I	ACTGG	2 cut(s)	48, 337
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	227, 423
BseDI	CCNNGG	2 cut(s)	129, 737
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	264, 738, 778
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	48, 337
BseXI	GCAGC	5 cut(s)	295, 375, 626, 707, 751
BsgI	GTGCAG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	128, 189, 362, 640
BsiHKCI	CYCGRG	1 cut(s)	312
BslI	CCNNNNNNNGG	3 cut(s)	264, 738, 778
BsmAI	GTCTC	1 cut(s)	323
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	4 cut(s)	128, 189, 362, 640
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	2 cut(s)	504, 669
Bsp143I	GATC	4 cut(s)	268, 438, 646, 733
Bsp19I	CCATGG	1 cut(s)	129
BspANI	GGCC	4 cut(s)	128, 189, 362, 640
BspCNI	CTCAG	1 cut(s)	349
BspHI	TCATGA	1 cut(s)	757
BspLI	GGNNCC	3 cut(s)	427, 729, 784
BspMAI	CTGCAG	2 cut(s)	393, 769
BspMI	ACCTGC	1 cut(s)	423
BspPI	GGATC	3 cut(s)	276, 641, 728
BspT104I	TTCGAA	2 cut(s)	504, 669
BsrDI	GCAATG	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	48, 337
BssECI	CCNNGG	2 cut(s)	129, 737
BssMI	GATC	4 cut(s)	268, 438, 646, 733
BssT1I	CCWWGG	2 cut(s)	129, 737
Bst2UI	CCWGG	2 cut(s)	227, 423
Bst4CI	ACNGT	1 cut(s)	563
Bst6I	CTCTTC	1 cut(s)	321
BstBI	TTCGAA	2 cut(s)	504, 669
BstC8I	GCNNGC	3 cut(s)	20, 430, 841
BstDEI	CTNAG	2 cut(s)	357, 699
BstDSI	CCRYGG	1 cut(s)	129
BstKTI	GATC	4 cut(s)	271, 441, 649, 736
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	4 cut(s)	268, 438, 646, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 704
BstNI	CCWGG	2 cut(s)	227, 423
BstNSI	RCATGY	1 cut(s)	455
BstSCI	CCNGG	2 cut(s)	225, 421
BstSFI	CTRYAG	2 cut(s)	389, 765
BstV1I	GCAGC	5 cut(s)	295, 375, 626, 707, 751
BstX2I	RGATCY	2 cut(s)	268, 646
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	2 cut(s)	268, 646
BsuRI	GGCC	4 cut(s)	128, 189, 362, 640
BtgI	CCRYGG	1 cut(s)	129
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	3 cut(s)	20, 430, 841
CciI	TCATGA	1 cut(s)	757
Cfr13I	GGNCC	2 cut(s)	638, 783
CseI	GACGC	1 cut(s)	606
Csp6I	GTAC	1 cut(s)	51
CviAII	CATG	5 cut(s)	130, 167, 452, 551, 758
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	2 cut(s)	357, 699
DpnI	GATC	4 cut(s)	270, 440, 648, 735
DpnII	GATC	4 cut(s)	268, 438, 646, 733
DraI	TTTAAA	1 cut(s)	798
EaeI	YGGCCR	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Eco130I	CCWWGG	2 cut(s)	129, 737
Eco147I	AGGCCT	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	783
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	783
EcoRII	CCWGG	2 cut(s)	225, 421
EcoT14I	CCWWGG	2 cut(s)	129, 737
EcoT22I	ATGCAT	1 cut(s)	549
ErhI	CCWWGG	2 cut(s)	129, 737
FaeI	CATG	5 cut(s)	133, 170, 455, 554, 761
FaiI	YATR	9 cut(s)	44, 131, 168, 182, 216, 236, 453, 552, 759
FatI	CATG	5 cut(s)	129, 166, 451, 550, 757
FbaI	TGATCA	1 cut(s)	438
Fnu4HI	GCNGC	5 cut(s)	309, 389, 615, 696, 765
Fsp4HI	GCNGC	5 cut(s)	309, 389, 615, 696, 765
FspBI	CTAG	3 cut(s)	26, 243, 368
GluI	GCNGC	5 cut(s)	309, 389, 615, 696, 765
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	4 cut(s)	128, 189, 362, 640
HgaI	GACGC	1 cut(s)	606
Hin1II	CATG	5 cut(s)	133, 170, 455, 554, 761
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	2 cut(s)	9, 344
HphI	GGTGA	4 cut(s)	51, 154, 575, 588
Hpy166II	GTNNAC	2 cut(s)	530, 559
Hpy188I	TCNGA	2 cut(s)	273, 443
Hpy188III	TCNNGA	4 cut(s)	527, 684, 731, 758
Hpy8I	GTNNAC	2 cut(s)	530, 559
HpyAV	CCTTC	2 cut(s)	40, 83
HpyCH4III	ACNGT	1 cut(s)	563
HpyCH4V	TGCA	8 cut(s)	146, 391, 455, 547, 614, 677, 695, 767
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 704
HpyF3I	CTNAG	2 cut(s)	357, 699
Hsp92II	CATG	5 cut(s)	133, 170, 455, 554, 761
Ksp22I	TGATCA	1 cut(s)	438
Kzo9I	GATC	4 cut(s)	268, 438, 646, 733
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	5 cut(s)	295, 375, 626, 707, 751
LweI	GCATC	5 cut(s)	408, 534, 556, 664, 751
MaeI	CTAG	3 cut(s)	26, 243, 368
MaeIII	GTNAC	2 cut(s)	341, 563
MalI	GATC	4 cut(s)	270, 440, 648, 735
MboI	GATC	4 cut(s)	268, 438, 646, 733
MboII	GAAGA	2 cut(s)	338, 683
MflI	RGATCY	2 cut(s)	268, 646
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	7 cut(s)	36, 231, 336, 395, 506, 576, 832
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	3 cut(s)	428, 723, 771
MnlI	CCTC	9 cut(s)	129, 151, 200, 352, 373, 604, 625, 691, 831
Mox20I	TGGCCA	1 cut(s)	128
Mph1103I	ATGCAT	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	249, 579, 797
MslI	CAYNNNNRTG	1 cut(s)	450
Msp20I	TGGCCA	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	227, 423
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	2 cut(s)	227, 423
MwoI	GCNNNNNNNGC	2 cut(s)	305, 704
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	4 cut(s)	268, 438, 646, 733
NlaIII	CATG	5 cut(s)	133, 170, 455, 554, 761
NlaIV	GGNNCC	3 cut(s)	427, 729, 784
NmuCI	GTSAC	2 cut(s)	341, 563
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	455
NspV	TTCGAA	2 cut(s)	504, 669
PagI	TCATGA	1 cut(s)	757
PceI	AGGCCT	1 cut(s)	362
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	778
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	310, 390, 616, 697, 766
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PpuMI	RGGWCCY	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	783
Psp6I	CCWGG	2 cut(s)	225, 421
PspGI	CCWGG	2 cut(s)	225, 421
PspN4I	GGNNCC	3 cut(s)	427, 729, 784
PspPI	GGNCC	2 cut(s)	638, 783
PspPPI	RGGWCCY	1 cut(s)	783
PstI	CTGCAG	2 cut(s)	393, 769
PsuI	RGATCY	2 cut(s)	268, 646
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	249, 579, 797
SatI	GCNGC	5 cut(s)	309, 389, 615, 696, 765
Sau3AI	GATC	4 cut(s)	268, 438, 646, 733
Sau96I	GGNCC	2 cut(s)	638, 783
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	227, 423
SfaNI	GCATC	5 cut(s)	408, 534, 556, 664, 751
SfcI	CTRYAG	2 cut(s)	389, 765
SfuI	TTCGAA	2 cut(s)	504, 669
SinI	GGWCC	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	450
Sse9I	AATT	7 cut(s)	36, 231, 336, 395, 506, 576, 832
SseBI	AGGCCT	1 cut(s)	362
SspMI	CTAG	3 cut(s)	26, 243, 368
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	2 cut(s)	225, 421
StyI	CCWWGG	2 cut(s)	129, 737
TaaI	ACNGT	1 cut(s)	563
TaqI	TCGA	5 cut(s)	177, 198, 504, 669, 828
TasI	AATT	7 cut(s)	36, 231, 336, 395, 506, 576, 832
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	3 cut(s)	249, 579, 797
Tru9I	TTAA	3 cut(s)	249, 579, 797
TseFI	GTSAC	2 cut(s)	341, 563
TseI	GCWGC	5 cut(s)	308, 388, 614, 695, 764
Tsp45I	GTSAC	2 cut(s)	341, 563
TspDTI	ATGAA	1 cut(s)	528
Van91I	CCANNNNNTGG	1 cut(s)	778
VpaK11BI	GGWCC	1 cut(s)	783
XceI	RCATGY	1 cut(s)	455
XspI	CTAG	3 cut(s)	26, 243, 368
ZrmI	AGTACT	1 cut(s)	52
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.