RchiOBHm_Chr6g0273661

(DL)-glycerol-3-phosphatase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
34581469 .. 34587373
5905 bp
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UTR
Exon/CDS
Intron
PRQ24549

Sequence Viewer

Length: 360 bp
ATGAATCATGATTCTCAGTTTCTCACAATCTCACAAACTCTTTCTGGGTCTTCACTTTCCAATCAAAGGCGTCGGCTCTTCACTCTTGGTTTGCTCGCTTTGACTCCTCTTCAAGCTGTCAAGCAACAAAGCAGAAGACTTGGTTCAATTTCTAGGTTCTTCAAGCTCAGTACAATAAAACTTTTGATTGGGCTTTGGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGAGTCTTTGTTGAAGACACTGGACTTAGTGACTCTCTTACTGCTGAGGACTTTCTGGTTGAAAGAGAGGCAATGTTGCAGAAATTGTTTCCAACAAGCGAGCTGATGCCAGAATGGCGTTGA

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

10.19

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 70
AfaI GTAC 1 cut(s) 172
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 5 cut(s) 113, 147, 163, 251, 299
AluBI AGCT 4 cut(s) 116, 166, 233, 340
AluI AGCT 4 cut(s) 116, 166, 233, 340
Ama87I CYCGRG 1 cut(s) 237
ApeKI GCWGC 1 cut(s) 233
AvaI CYCGRG 1 cut(s) 237
BbsI GAAGAC 3 cut(s) 42, 142, 258
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 220
BccI CCATC 1 cut(s) 205
BfaI CTAG 1 cut(s) 153
BglI GCCNNNNNGGC 1 cut(s) 352
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 237
BmsI GCATC 1 cut(s) 333
BpiI GAAGAC 3 cut(s) 42, 142, 258
Bpu10I CCTNAGC 1 cut(s) 282
BsaHI GRCGYC 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 66
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 29, 181, 273
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 1 cut(s) 220
BsiHKCI CYCGRG 1 cut(s) 237
BslI CCNNNNNNNGG 1 cut(s) 66
BsoBI CYCGRG 1 cut(s) 237
BspCNI CTCAG 3 cut(s) 28, 180, 274
BspHI TCATGA 1 cut(s) 7
BspQI GCTCTTC 1 cut(s) 83
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 1 cut(s) 262
BssNI GRCGYC 1 cut(s) 70
Bst6I CTCTTC 2 cut(s) 83, 114
BstACI GRCGYC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 96, 338
BstDEI CTNAG 4 cut(s) 15, 167, 263, 282
BstMWI GCNNNNNNNGC 2 cut(s) 230, 352
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 3 cut(s) 42, 142, 258
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 96, 338
CciI TCATGA 1 cut(s) 7
CseI GACGC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 171
CviAII CATG 1 cut(s) 8
CviJI RGCY 6 cut(s) 76, 116, 166, 193, 233, 340
CviKI_1 RGCY 6 cut(s) 76, 116, 166, 193, 233, 340
CviQI GTAC 1 cut(s) 171
DdeI CTNAG 4 cut(s) 15, 167, 263, 282
Eam1104I CTCTTC 2 cut(s) 83, 114
EarI CTCTTC 2 cut(s) 83, 114
Eco88I CYCGRG 1 cut(s) 237
FaeI CATG 1 cut(s) 11
FaiI YATR 1 cut(s) 9
FatI CATG 1 cut(s) 7
Fnu4HI GCNGC 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 234
HgaI GACGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 70
Hin1II CATG 1 cut(s) 11
HinfI GANTC 5 cut(s) 4, 11, 103, 240, 269
Hpy188III TCNNGA 1 cut(s) 8
Hpy99I CGWCG 1 cut(s) 75
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 352
HpyF3I CTNAG 4 cut(s) 15, 167, 263, 282
Hsp92I GRCGYC 1 cut(s) 70
Hsp92II CATG 1 cut(s) 11
LguI GCTCTTC 1 cut(s) 83
LpnPI CCDG 3 cut(s) 30, 243, 278
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 1 cut(s) 333
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 266
MboII GAAGA 6 cut(s) 42, 70, 101, 147, 151, 263
MluCI AATT 2 cut(s) 147, 320
MlyI GAGTC 3 cut(s) 97, 249, 263
MmeI TCCRAC 1 cut(s) 353
MnlI CCTC 3 cut(s) 117, 277, 298
MwoI GCNNNNNNNGC 2 cut(s) 230, 352
NlaIII CATG 1 cut(s) 11
NmuCI GTSAC 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 237
PagI TCATGA 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 83
PfeI GAWTC 2 cut(s) 4, 11
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 3 cut(s) 97, 248, 263
PpsI GAGTC 3 cut(s) 97, 248, 263
PspXI VCTCGAGB 1 cut(s) 237
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SapI GCTCTTC 1 cut(s) 83
SatI GCNGC 1 cut(s) 234
SchI GAGTC 3 cut(s) 97, 249, 263
SetI ASST 5 cut(s) 118, 158, 168, 235, 342
SfaNI GCATC 1 cut(s) 333
Sfr274I CTCGAG 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 2 cut(s) 147, 320
SspMI CTAG 1 cut(s) 153
TaqI TCGA 1 cut(s) 238
TasI AATT 2 cut(s) 147, 320
TatI WGTACW 1 cut(s) 170
TfiI GAWTC 2 cut(s) 4, 11
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 262
XhoI CTCGAG 1 cut(s) 237
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.