Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Forward (+)

46249162 .. 46253138

Gene Structure 3977 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009082

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAAATCCCTCTGCAGCCAAAGCACCAATCAGCCATGTCATTTTCGATATGGACGGCCTCTTACTCGACACAGAGAAGTTCTATACTGAAGTCCAGGAAATTATACTTGCTAGGTACAATAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGACACTGGACTTAGTGACTCTCTTACTGCTGAGGACTTTCTGGTTGAAAGAGAGGCAATGTTGCAGAAATTGTTTCCAACAAGCGAGCTGATGCCAGGGGCCAGCAGGTTGATCAGACATCTACATGCAAAAGCAATACCCTTTTGCTTGGCAACTGGCTCTCATAAGCAACACTTCGAATTGAAAACACAAAGCCATCGTGAGCTTTTTTCATTGATGCATCATGTTGTCAACGGTGACGATCCAGAAGTTAAACAAGGCAAACCCTCACCAGATATTTTCCTTGCAGCATCCAAACGTTTTGAGGATGGGCCAATAGATCCAAATAAATGTCTTGTGTTCGAAGATGCACCCTCTGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTAATGGTTCCAGATCCAAGGTTGGACAGCTCTTTTCATGATTCTGCAGACCAAGTTCTGGGGTCCCTGTTGGATTTTAACCCAAGTGATTGGGGTTTGCCTCCATTTGACAATCCAGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

239

Amino Acids

26.26

Weight (kDa)

5.33

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	12 - 194	3.2e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	14 - 200	2.1e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccB7I	CCANNNNNTGG	1 cut(s)	649
AclI	AACGTT	1 cut(s)	496
AclWI	GGATC	3 cut(s)	434, 512, 599
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	649
AgsI	TTSAA	4 cut(s)	145, 197, 245, 382
AjnI	CCWGG	2 cut(s)	96, 292
AluBI	AGCT	6 cut(s)	179, 286, 403, 569, 621, 714
AluI	AGCT	6 cut(s)	179, 286, 403, 569, 621, 714
AlwI	GGATC	3 cut(s)	434, 512, 599
Ama87I	CYCGRG	1 cut(s)	183
AoxI	GGCC	3 cut(s)	58, 297, 509
ApeKI	GCWGC	4 cut(s)	17, 179, 485, 566
AspS9I	GGNCC	3 cut(s)	297, 509, 654
AsuHPI	GGTGA	2 cut(s)	446, 459
AsuII	TTCGAA	2 cut(s)	375, 540
AvaI	CYCGRG	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	204
BbvCI	CCTCAGC	1 cut(s)	228
BbvI	GCAGC	4 cut(s)	29, 166, 497, 578
BccI	CCATC	3 cut(s)	151, 402, 500
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	2 cut(s)	98, 294
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	15, 636
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	4 cut(s)	18, 180, 486, 567
BlsI	GCNGC	4 cut(s)	19, 181, 487, 568
Bme1390I	CCNGG	2 cut(s)	98, 294
Bme18I	GGWCC	1 cut(s)	654
BmeT110I	CYCGRG	1 cut(s)	183
BmgT120I	GGNCC	3 cut(s)	297, 509, 654
BmiI	GGNNCC	4 cut(s)	298, 600, 655, 656
BmrFI	CCNGG	2 cut(s)	98, 294
BmsI	GCATC	5 cut(s)	279, 405, 427, 497, 535
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	228
Bpu14I	TTCGAA	2 cut(s)	375, 540
BsaJI	CCNNGG	2 cut(s)	293, 608
Bsc4I	CCNNNNNNNGG	1 cut(s)	649
Bse1I	ACTGG	2 cut(s)	208, 358
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	2 cut(s)	98, 294
BseDI	CCNNGG	2 cut(s)	293, 608
BseGI	GGATG	2 cut(s)	488, 511
BseLI	CCNNNNNNNGG	1 cut(s)	649
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	2 cut(s)	208, 358
BseXI	GCAGC	4 cut(s)	29, 166, 497, 578
BshFI	GGCC	3 cut(s)	60, 299, 511
BsiHKCI	CYCGRG	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	1 cut(s)	649
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	60, 299, 511
BsoBI	CYCGRG	1 cut(s)	183
Bsp119I	TTCGAA	2 cut(s)	375, 540
Bsp143I	GATC	4 cut(s)	309, 439, 517, 604
BspANI	GGCC	3 cut(s)	60, 299, 511
BspCNI	CTCAG	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	4 cut(s)	298, 600, 655, 656
BspMAI	CTGCAG	2 cut(s)	19, 640
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	3 cut(s)	434, 512, 599
BspT104I	TTCGAA	2 cut(s)	375, 540
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	208, 358
BssECI	CCNNGG	2 cut(s)	293, 608
BssMI	GATC	4 cut(s)	309, 439, 517, 604
BssT1I	CCWWGG	1 cut(s)	608
Bst2UI	CCWGG	2 cut(s)	98, 294
Bst4CI	ACNGT	1 cut(s)	434
BstBI	TTCGAA	2 cut(s)	375, 540
BstC8I	GCNNGC	3 cut(s)	284, 301, 712
BstDEI	CTNAG	3 cut(s)	209, 228, 570
BstF5I	GGATG	2 cut(s)	488, 511
BstKTI	GATC	4 cut(s)	312, 442, 520, 607
BstMBI	GATC	4 cut(s)	309, 439, 517, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 146, 176, 575
BstNI	CCWGG	2 cut(s)	98, 294
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	2 cut(s)	96, 292
BstSFI	CTRYAG	2 cut(s)	15, 636
BstV1I	GCAGC	4 cut(s)	29, 166, 497, 578
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	517, 604
BstXI	CCANNNNNNTGG	1 cut(s)	681
BstYI	RGATCY	2 cut(s)	517, 604
BsuRI	GGCC	3 cut(s)	60, 299, 511
BtsCI	GGATG	2 cut(s)	488, 511
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	284, 301, 712
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	297, 509, 654
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	4 cut(s)	38, 323, 422, 629
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	209, 228, 570
DpnI	GATC	4 cut(s)	311, 441, 519, 606
DpnII	GATC	4 cut(s)	309, 439, 517, 604
Eco130I	CCWWGG	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	111
Eco88I	CYCGRG	1 cut(s)	183
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	2 cut(s)	96, 292
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	4 cut(s)	41, 326, 425, 632
FaiI	YATR	8 cut(s)	39, 53, 87, 107, 324, 363, 423, 630
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	37, 322, 421, 628
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	4 cut(s)	18, 180, 486, 567
FokI	GGATG	2 cut(s)	475, 518
Fsp4HI	GCNGC	4 cut(s)	18, 180, 486, 567
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	4 cut(s)	18, 180, 486, 567
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	60, 299, 511
Hin1II	CATG	4 cut(s)	41, 326, 425, 632
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	215, 632
HphI	GGTGA	2 cut(s)	446, 459
Hpy166II	GTNNAC	1 cut(s)	430
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	5 cut(s)	398, 443, 555, 602, 629
Hpy8I	GTNNAC	1 cut(s)	430
HpyCH4III	ACNGT	1 cut(s)	434
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	8 cut(s)	17, 262, 326, 418, 485, 548, 566, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 146, 176, 575
HpyF3I	CTNAG	3 cut(s)	209, 228, 570
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	41, 326, 425, 632
KflI	GGGWCCC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	309, 439, 517, 604
Lsp1109I	GCAGC	4 cut(s)	29, 166, 497, 578
LweI	GCATC	5 cut(s)	279, 405, 427, 497, 535
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	2 cut(s)	212, 434
MalI	GATC	4 cut(s)	311, 441, 519, 606
MboI	GATC	4 cut(s)	309, 439, 517, 604
MboII	GAAGA	2 cut(s)	209, 554
MflI	RGATCY	2 cut(s)	517, 604
MluCI	AATT	3 cut(s)	102, 266, 377
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	3 cut(s)	299, 594, 642
MnlI	CCTC	8 cut(s)	22, 71, 223, 244, 475, 496, 562, 702
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	2 cut(s)	450, 669
MslI	CAYNNNNRTG	1 cut(s)	321
MspR9I	CCNGG	2 cut(s)	98, 294
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	2 cut(s)	98, 294
MwoI	GCNNNNNNNGC	4 cut(s)	23, 146, 176, 575
NdeII	GATC	4 cut(s)	309, 439, 517, 604
NlaIII	CATG	4 cut(s)	41, 326, 425, 632
NlaIV	GGNNCC	4 cut(s)	298, 600, 655, 656
NmuCI	GTSAC	2 cut(s)	212, 434
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	326
NspV	TTCGAA	2 cut(s)	375, 540
PagI	TCATGA	1 cut(s)	628
PctI	GAATGC	1 cut(s)	580
PfeI	GAWTC	1 cut(s)	632
PflMI	CCANNNNNTGG	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	4 cut(s)	19, 181, 487, 568
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	96, 292
PspGI	CCWGG	2 cut(s)	96, 292
PspN4I	GGNNCC	4 cut(s)	298, 600, 655, 656
PspPI	GGNCC	3 cut(s)	297, 509, 654
PspPPI	RGGWCCY	1 cut(s)	654
PstI	CTGCAG	2 cut(s)	19, 640
PsuI	RGATCY	2 cut(s)	517, 604
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	450, 669
SatI	GCNGC	4 cut(s)	18, 180, 486, 567
Sau3AI	GATC	4 cut(s)	309, 439, 517, 604
Sau96I	GGNCC	3 cut(s)	297, 509, 654
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	98, 294
SfaNI	GCATC	5 cut(s)	279, 405, 427, 497, 535
SfcI	CTRYAG	2 cut(s)	15, 636
SfuI	TTCGAA	2 cut(s)	375, 540
SinI	GGWCC	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	3 cut(s)	102, 266, 377
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	2 cut(s)	96, 292
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	1 cut(s)	434
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	4 cut(s)	48, 69, 375, 540
TasI	AATT	3 cut(s)	102, 266, 377
TfiI	GAWTC	1 cut(s)	632
Tru1I	TTAA	2 cut(s)	450, 669
Tru9I	TTAA	2 cut(s)	450, 669
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	212, 434
TseI	GCWGC	4 cut(s)	17, 179, 485, 566
Tsp45I	GTSAC	2 cut(s)	212, 434
TspDTI	ATGAA	2 cut(s)	399, 617
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	654
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.