Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208732.1

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Forward (+)

11 .. 658

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208732.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgatttttgctgtctcagacacagagaagttctatactgaagtccaggaaattatacttgctaggtacaacaaaacttttgattgggctttgaaagcaaaaatgatgggaaagaaagcaatagaagctgctcgggtctttgttgaagacactggacttagtgactctcttactgccgaggactttctggttgaaagagaggcaatgttgcagaagttgtttccaacgagcgagctgatgccaggggccagcaggttgatcagacatctacatgcgaaagcaataccgttttgcttggcaactgggtatagttctttcatatattttttttccattttgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

114

Amino Acids

13.05

Weight (kDa)

6.1

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	68, 341
AgsI	TTSAA	3 cut(s)	94, 146, 194
AjnI	CCWGG	2 cut(s)	45, 241
AluBI	AGCT	2 cut(s)	128, 235
AluI	AGCT	2 cut(s)	128, 235
Alw26I	GTCTC	1 cut(s)	19
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	1 cut(s)	246
ApeKI	GCWGC	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	246
AvaI	CYCGRG	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	47, 243
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	63, 343
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme1390I	CCNGG	2 cut(s)	47, 243
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	246
BmiI	GGNNCC	1 cut(s)	247
BmrFI	CCNGG	2 cut(s)	47, 243
BmrI	ACTGGG	1 cut(s)	312
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	153
BsaJI	CCNNGG	2 cut(s)	177, 242
Bse1I	ACTGG	2 cut(s)	157, 307
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	47, 243
BseDI	CCNNGG	2 cut(s)	177, 242
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	157, 307
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	1 cut(s)	248
BsiHKCI	CYCGRG	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	157, 307
BssECI	CCNNGG	2 cut(s)	177, 242
BssMI	GATC	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	47, 243
Bst4CI	ACNGT	1 cut(s)	288
BstC8I	GCNNGC	2 cut(s)	233, 250
BstDEI	CTNAG	2 cut(s)	16, 158
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 125
BstNI	CCWGG	2 cut(s)	47, 243
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	2 cut(s)	45, 241
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	233, 250
Cfr13I	GGNCC	1 cut(s)	246
Csp6I	GTAC	2 cut(s)	67, 340
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	4 cut(s)	89, 128, 235, 248
CviKI_1	RGCY	4 cut(s)	89, 128, 235, 248
CviQI	GTAC	2 cut(s)	67, 340
DdeI	CTNAG	2 cut(s)	16, 158
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	132
EcoRII	CCWGG	2 cut(s)	45, 241
FaeI	CATG	1 cut(s)	275
FaiI	YATR	6 cut(s)	36, 56, 273, 309, 320, 322
FatI	CATG	1 cut(s)	271
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	2 cut(s)	63, 343
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	1 cut(s)	248
Hin1II	CATG	1 cut(s)	275
HinfI	GANTC	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	19, 263
HpyCH4III	ACNGT	1 cut(s)	288
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 125
HpyF3I	CTNAG	2 cut(s)	16, 158
Hsp92II	CATG	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	9 cut(s)	32, 59, 138, 173, 228, 238, 255, 262, 288
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	2 cut(s)	63, 343
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	1 cut(s)	158
MluCI	AATT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	2 cut(s)	172, 193
MslI	CAYNNNNRTG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	47, 243
MvaI	CCWGG	2 cut(s)	47, 243
MwoI	GCNNNNNNNGC	2 cut(s)	95, 125
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	247
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	275
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
Psp6I	CCWGG	2 cut(s)	45, 241
PspGI	CCWGG	2 cut(s)	45, 241
PspN4I	GGNNCC	1 cut(s)	247
PspPI	GGNCC	1 cut(s)	246
RsaI	GTAC	2 cut(s)	68, 341
RsaNI	GTAC	2 cut(s)	67, 340
RseI	CAYNNNNRTG	1 cut(s)	270
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	47, 243
SetI	ASST	4 cut(s)	68, 130, 237, 257
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	270
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	2 cut(s)	63, 343
StyD4I	CCNGG	2 cut(s)	45, 241
TaaI	ACNGT	1 cut(s)	288
TasI	AATT	1 cut(s)	51
TatI	WGTACW	1 cut(s)	339
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	157
XceI	RCATGY	1 cut(s)	275
XspI	CTAG	2 cut(s)	63, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.