Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Forward (+)

19937028 .. 19940340

Gene Structure 3313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g22440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCCAAACTTTCCCAAATCCTCCCTATGTTTGTGGCAGTTGTGCAGAAGGCGGAAGCATCATCCCTCTTTCCCCAAAAGCAAAAGCTGTTGGGTAGTACTGCAATGGCGAATCCCTCCCAAGCTGTCGCCGGCAGAGGACCAATCACTCATGTCATCTTCGATATGGACGGCCTCTTACTCGACACAGAGAAGTTTTATACTGAAGTCCAGGAAAAAATACTTGCTAGGTATAATAAAACTTTTGATTGGTCTCTCAAAGCGAAAATGATGGGAAAGAAAGCAATCGAAGCTGCTCGGGTGTTTGTTGAAGAATCTGGAATTAGTGACACCTTAACTGCTGAGGGTTTTCTAGTTGAGAGAGAGGCGGTGTTGCAGAGTTTGTTTCCAACAAGTGAGCTCATGCCAGGGGCTAGCCGCTTGATCAGACATCTTCATGCAAAAGGAATACCATGTGCCTTGGCAACGGGTTCTCAGAAGACACATTTTGAATTGAAAACACAAAAACATGGCGAACTTTTTTCATTGATGCATCATCTAGTCCTTGGTGATGATCCAGAAGTTAAACAAGGGAAGCCTGCACCAGATGTATTCCTTGCTGCAGCCAAAAGATTTGAGGGTTCCCCAATTGATCCGAAGAAAATTCTTGTGTTTGAAGATGCACCGGCTGGAGTTCTTGCAGCCAAGAATGCTGGAATCAGGAAGGTTGTAATGGTTCCAGATCCAAGACTGGACAGCTGTTTTTATGATATTGCAGACCAAGTTTTGAAATCCCTATTGGATTTAAACCCAAGCGATTGGGGTCTGCCTCCGTTTGACAATCCAGCGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

278

Amino Acids

30.28

Weight (kDa)

6.66

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	50 - 232	2.8e-26	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	52 - 236	5.2e-19	Haloacid dehalogenase-like hydrolase
HAD	PF12710	52 - 192	6.1e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 368, 418
AclWI	GGATC	3 cut(s)	548, 626, 716
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	642
AcuI	CTGAAG	1 cut(s)	225
AfaI	GTAC	1 cut(s)	100
AgsI	TTSAA	5 cut(s)	311, 491, 496, 656, 769
AjnI	CCWGG	2 cut(s)	210, 406
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	6 cut(s)	88, 125, 293, 400, 738, 831
AluI	AGCT	6 cut(s)	88, 125, 293, 400, 738, 831
Alw21I	GWGCWC	1 cut(s)	402
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	3 cut(s)	548, 626, 716
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	2 cut(s)	3, 172
ApeKI	GCWGC	4 cut(s)	293, 599, 602, 680
ApoI	RAATTY	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	560
AsuNHI	GCTAGC	1 cut(s)	413
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	140
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	4 cut(s)	280, 586, 614, 692
BccI	CCATC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	2 cut(s)	212, 408
BclI	TGATCA	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	4 cut(s)	228, 353, 414, 539
BfmI	CTRYAG	1 cut(s)	600
BisI	GCNGC	5 cut(s)	294, 418, 600, 603, 681
BlsI	GCNGC	5 cut(s)	295, 419, 601, 604, 682
BmcAI	AGTACT	1 cut(s)	100
Bme1390I	CCNGG	2 cut(s)	212, 408
Bme18I	GGWCC	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	622, 717
BmrFI	CCNGG	2 cut(s)	212, 408
BmsI	GCATC	4 cut(s)	68, 519, 541, 649
BmtI	GCTAGC	1 cut(s)	417
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	1 cut(s)	690
Bpu10I	CCTNAGC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	3 cut(s)	407, 459, 544
Bse118I	RCCGGY	2 cut(s)	131, 664
Bse1I	ACTGG	1 cut(s)	735
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	212, 408
BseDI	CCNNGG	3 cut(s)	407, 459, 544
BseGI	GGATG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	2 cut(s)	333, 488
BseNI	ACTGG	1 cut(s)	735
BseXI	GCAGC	4 cut(s)	280, 586, 614, 692
BsgI	GTGCAG	2 cut(s)	65, 564
BshFI	GGCC	2 cut(s)	5, 174
BsiHKAI	GWGCWC	1 cut(s)	402
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	132, 665
BsmAI	GTCTC	1 cut(s)	258
BsmI	GAATGC	1 cut(s)	694
BsnI	GGCC	2 cut(s)	5, 174
Bso31I	GGTCTC	1 cut(s)	258
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp143I	GATC	4 cut(s)	423, 553, 631, 721
BspACI	CCGC	3 cut(s)	53, 368, 418
BspANI	GGCC	2 cut(s)	5, 174
BspCNI	CTCAG	2 cut(s)	334, 487
BspLI	GGNNCC	2 cut(s)	622, 717
BspMAI	CTGCAG	1 cut(s)	604
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	3 cut(s)	548, 626, 716
BspTNI	GGTCTC	1 cut(s)	258
BsrDI	GCAATG	1 cut(s)	111
BsrFI	RCCGGY	2 cut(s)	131, 664
BsrI	ACTGG	1 cut(s)	735
BssAI	RCCGGY	2 cut(s)	131, 664
BssECI	CCNNGG	3 cut(s)	407, 459, 544
BssMI	GATC	4 cut(s)	423, 553, 631, 721
BssT1I	CCWWGG	2 cut(s)	459, 544
Bst2UI	CCWGG	2 cut(s)	212, 408
BstC8I	GCNNGC	4 cut(s)	133, 415, 579, 829
BstDEI	CTNAG	2 cut(s)	342, 474
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	4 cut(s)	426, 556, 634, 724
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	4 cut(s)	423, 553, 631, 721
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 689
BstNI	CCWGG	2 cut(s)	212, 408
BstSCI	CCNGG	2 cut(s)	210, 406
BstSFI	CTRYAG	1 cut(s)	600
BstV1I	GCAGC	4 cut(s)	280, 586, 614, 692
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	721
BstXI	CCANNNNNNTGG	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	721
BsuRI	GGCC	2 cut(s)	5, 174
BtsCI	GGATG	1 cut(s)	62
Cac8I	GCNNGC	4 cut(s)	133, 415, 579, 829
Cfr10I	RCCGGY	2 cut(s)	131, 664
Cfr13I	GGNCC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	5 cut(s)	152, 403, 437, 453, 509
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	2 cut(s)	342, 474
DpnI	GATC	4 cut(s)	425, 555, 633, 723
DpnII	GATC	4 cut(s)	423, 553, 631, 721
DraI	TTTAAA	1 cut(s)	786
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	400
Eco130I	CCWWGG	2 cut(s)	459, 544
Eco24I	GRGCYC	1 cut(s)	402
Eco31I	GGTCTC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	225
Eco88I	CYCGRG	1 cut(s)	297
EcoICRI	GAGCTC	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	210, 406
EcoT14I	CCWWGG	2 cut(s)	459, 544
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	402
ErhI	CCWWGG	2 cut(s)	459, 544
FaeI	CATG	5 cut(s)	155, 406, 440, 456, 512
FatI	CATG	5 cut(s)	151, 402, 436, 452, 508
FbaI	TGATCA	1 cut(s)	423
Fnu4HI	GCNGC	5 cut(s)	294, 418, 600, 603, 681
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	402
Fsp4HI	GCNGC	5 cut(s)	294, 418, 600, 603, 681
FspBI	CTAG	4 cut(s)	228, 353, 414, 539
GluI	GCNGC	5 cut(s)	294, 418, 600, 603, 681
GsuI	CTGGAG	1 cut(s)	690
HaeIII	GGCC	2 cut(s)	5, 174
HapII	CCGG	2 cut(s)	132, 665
Hin1II	CATG	5 cut(s)	155, 406, 440, 456, 512
HinfI	GANTC	3 cut(s)	112, 314, 696
HpaII	CCGG	2 cut(s)	132, 665
HphI	GGTGA	1 cut(s)	560
Hpy188I	TCNGA	3 cut(s)	428, 477, 636
Hpy188III	TCNNGA	4 cut(s)	318, 557, 700, 719
HpyAV	CCTTC	2 cut(s)	43, 697
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 689
HpyF3I	CTNAG	2 cut(s)	342, 474
Hsp92II	CATG	5 cut(s)	155, 406, 440, 456, 512
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	423, 553, 631, 721
Lsp1109I	GCAGC	4 cut(s)	280, 586, 614, 692
LweI	GCATC	4 cut(s)	68, 519, 541, 649
MaeI	CTAG	4 cut(s)	228, 353, 414, 539
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	4 cut(s)	425, 555, 633, 723
MboI	GATC	4 cut(s)	423, 553, 631, 721
MboII	GAAGA	6 cut(s)	151, 323, 425, 490, 649, 668
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	1 cut(s)	721
MhlI	GDGCHC	1 cut(s)	402
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	321, 491, 627, 642
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	413
MnlI	CCTC	9 cut(s)	32, 77, 127, 131, 185, 337, 358, 610, 819
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	534
MroNI	GCCGGC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	335, 564, 785
MslI	CAYNNNNRTG	1 cut(s)	435
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	738
MspI	CCGG	2 cut(s)	132, 665
MspR9I	CCNGG	2 cut(s)	212, 408
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	694
MvaI	CCWGG	2 cut(s)	212, 408
MwoI	GCNNNNNNNGC	2 cut(s)	290, 689
NaeI	GCCGGC	1 cut(s)	133
NdeII	GATC	4 cut(s)	423, 553, 631, 721
NgoMIV	GCCGGC	1 cut(s)	131
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	5 cut(s)	155, 406, 440, 456, 512
NlaIV	GGNNCC	2 cut(s)	622, 717
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	534
PctI	GAATGC	1 cut(s)	694
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	3 cut(s)	112, 314, 696
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	5 cut(s)	295, 419, 601, 604, 682
Psp124BI	GAGCTC	1 cut(s)	402
Psp6I	CCWGG	2 cut(s)	210, 406
PspGI	CCWGG	2 cut(s)	210, 406
PspN4I	GGNNCC	2 cut(s)	622, 717
PspPI	GGNCC	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	604
PsuI	RGATCY	1 cut(s)	721
PvuII	CAGCTG	1 cut(s)	738
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
RseI	CAYNNNNRTG	1 cut(s)	435
SacI	GAGCTC	1 cut(s)	402
SaqAI	TTAA	3 cut(s)	335, 564, 785
SatI	GCNGC	5 cut(s)	294, 418, 600, 603, 681
Sau3AI	GATC	4 cut(s)	423, 553, 631, 721
Sau96I	GGNCC	1 cut(s)	140
ScaI	AGTACT	1 cut(s)	100
ScrFI	CCNGG	2 cut(s)	212, 408
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	9 cut(s)	90, 127, 233, 295, 335, 402, 708, 740, 833
SfaNI	GCATC	4 cut(s)	68, 519, 541, 649
SfcI	CTRYAG	1 cut(s)	600
SinI	GGWCC	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	4 cut(s)	321, 491, 627, 642
SsiI	CCGC	3 cut(s)	53, 368, 418
SspMI	CTAG	4 cut(s)	228, 353, 414, 539
SstI	GAGCTC	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	210, 406
StyI	CCWWGG	2 cut(s)	459, 544
TaqI	TCGA	3 cut(s)	162, 183, 288
TasI	AATT	4 cut(s)	321, 491, 627, 642
TatI	WGTACW	1 cut(s)	98
TauI	GCSGC	1 cut(s)	420
TfiI	GAWTC	3 cut(s)	112, 314, 696
Tru1I	TTAA	3 cut(s)	335, 564, 785
Tru9I	TTAA	3 cut(s)	335, 564, 785
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	4 cut(s)	293, 599, 602, 680
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	425, 513
TspGWI	ACGGA	1 cut(s)	801
VpaK11BI	GGWCC	1 cut(s)	140
XapI	RAATTY	1 cut(s)	642
XspI	CTAG	4 cut(s)	228, 353, 414, 539
ZrmI	AGTACT	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.