Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

18105344 .. 18109652

Gene Structure 4309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG105400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATTTTTGCTGTCTCAGACACAGAGAAGTTCTATACTGAAGTCCAGGAAATTATACTTGCTAGGTACAATAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGACACTGGACTTAGTGACTCTCTTACTGCTGAGGACTTTCTGGTTGAAAGAGAGGCAATGTTGCAGAAATTGTTTCCAACAAGCGAGCTGATGCCAGGGGCCAGCAGGTTGATCAGACATCTACTTGCCAAAGCAATACCCTTTTGCTTGGCAACTGGCTCTAATAAGCGACATTTCGAATTGAAAACACAGAGCCATCGTGAGCTTTTTTCATTGATGCATCATGTTGTCAACGGTGACGATCCAGAAGTTAAGCAAGGCAAACCCTCACCAGATATTTTCCTTGCAGCGTCCAAACGTTTTGAGGGTGGGCCAATAGATCCAAATAAATGTCTTGTGTTCGAAGATGCACCCTCTGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTAATGGTTCCAGATCCAAGGTTGGACAGCTCTTTTCATGATGCTGCAGACCTAGTTTTGGGGTCCCTGTTGGATTTTAACCCAAGTGTTTGGGGTTTGCCTCCATTTGACAATCCAGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

221

Amino Acids

24.39

Weight (kDa)

5.53

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	7 - 183	1.4e-10	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	17 - 177	2.1e-17	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	243
AclI	AACGTT	1 cut(s)	445
AclWI	GGATC	3 cut(s)	383, 461, 548
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	598
AgsI	TTSAA	4 cut(s)	94, 146, 194, 331
AjnI	CCWGG	2 cut(s)	45, 241
AluBI	AGCT	6 cut(s)	128, 235, 352, 518, 570, 663
AluI	AGCT	6 cut(s)	128, 235, 352, 518, 570, 663
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	3 cut(s)	383, 461, 548
Ama87I	CYCGRG	1 cut(s)	132
AoxI	GGCC	2 cut(s)	246, 458
ApeKI	GCWGC	4 cut(s)	128, 434, 515, 584
AspS9I	GGNCC	3 cut(s)	246, 458, 603
AsuHPI	GGTGA	2 cut(s)	395, 408
AsuII	TTCGAA	2 cut(s)	324, 489
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	153
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	4 cut(s)	115, 446, 527, 571
BccI	CCATC	2 cut(s)	100, 351
BciT130I	CCWGG	2 cut(s)	47, 243
BclI	TGATCA	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	63, 593
BfmI	CTRYAG	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	243
BisI	GCNGC	4 cut(s)	129, 435, 516, 585
BlsI	GCNGC	4 cut(s)	130, 436, 517, 586
Bme1390I	CCNGG	2 cut(s)	47, 243
Bme18I	GGWCC	1 cut(s)	603
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	246, 458, 603
BmiI	GGNNCC	4 cut(s)	247, 549, 604, 605
BmrFI	CCNGG	2 cut(s)	47, 243
BmsI	GCATC	5 cut(s)	228, 354, 376, 484, 571
BpiI	GAAGAC	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu14I	TTCGAA	2 cut(s)	324, 489
BsaJI	CCNNGG	2 cut(s)	242, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	598
Bse1I	ACTGG	2 cut(s)	157, 307
Bse3DI	GCAATG	1 cut(s)	210
BseBI	CCWGG	2 cut(s)	47, 243
BseDI	CCNNGG	2 cut(s)	242, 557
BseLI	CCNNNNNNNGG	1 cut(s)	598
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	2 cut(s)	30, 168
BseNI	ACTGG	2 cut(s)	157, 307
BseXI	GCAGC	4 cut(s)	115, 446, 527, 571
BshFI	GGCC	2 cut(s)	248, 460
BsiHKCI	CYCGRG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	589
BslI	CCNNNNNNNGG	1 cut(s)	598
BsmAI	GTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	589
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	248, 460
BsoBI	CYCGRG	1 cut(s)	132
Bsp119I	TTCGAA	2 cut(s)	324, 489
Bsp143I	GATC	4 cut(s)	258, 388, 466, 553
BspANI	GGCC	2 cut(s)	248, 460
BspCNI	CTCAG	2 cut(s)	29, 169
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	4 cut(s)	247, 549, 604, 605
BspMAI	CTGCAG	1 cut(s)	589
BspMI	ACCTGC	1 cut(s)	243
BspPI	GGATC	3 cut(s)	383, 461, 548
BspT104I	TTCGAA	2 cut(s)	324, 489
BsrDI	GCAATG	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	157, 307
BssECI	CCNNGG	2 cut(s)	242, 557
BssMI	GATC	4 cut(s)	258, 388, 466, 553
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	47, 243
Bst4CI	ACNGT	1 cut(s)	383
BstBI	TTCGAA	2 cut(s)	324, 489
BstC8I	GCNNGC	3 cut(s)	233, 250, 661
BstDEI	CTNAG	4 cut(s)	16, 158, 177, 519
BstKTI	GATC	4 cut(s)	261, 391, 469, 556
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	4 cut(s)	258, 388, 466, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 125, 524
BstNI	CCWGG	2 cut(s)	47, 243
BstSCI	CCNGG	2 cut(s)	45, 241
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	115, 446, 527, 571
BstV2I	GAAGAC	1 cut(s)	153
BstX2I	RGATCY	2 cut(s)	466, 553
BstXI	CCANNNNNNTGG	1 cut(s)	630
BstYI	RGATCY	2 cut(s)	466, 553
BsuRI	GGCC	2 cut(s)	248, 460
BtsIMutI	CAGTG	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	233, 250, 661
CciI	TCATGA	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	246, 458, 603
CseI	GACGC	1 cut(s)	426
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	2 cut(s)	371, 578
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	4 cut(s)	16, 158, 177, 519
DpnI	GATC	4 cut(s)	260, 390, 468, 555
DpnII	GATC	4 cut(s)	258, 388, 466, 553
Eco130I	CCWWGG	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	603
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	603
EcoRII	CCWGG	2 cut(s)	45, 241
EcoT14I	CCWWGG	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	2 cut(s)	374, 581
FaiI	YATR	4 cut(s)	36, 56, 372, 579
FaqI	GGGAC	1 cut(s)	589
FatI	CATG	2 cut(s)	370, 577
FbaI	TGATCA	1 cut(s)	258
Fnu4HI	GCNGC	4 cut(s)	129, 435, 516, 585
Fsp4HI	GCNGC	4 cut(s)	129, 435, 516, 585
FspBI	CTAG	2 cut(s)	63, 593
GluI	GCNGC	4 cut(s)	129, 435, 516, 585
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	2 cut(s)	248, 460
HgaI	GACGC	1 cut(s)	426
Hin1II	CATG	2 cut(s)	374, 581
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	2 cut(s)	395, 408
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	2 cut(s)	19, 263
Hpy188III	TCNNGA	5 cut(s)	347, 392, 504, 551, 578
Hpy8I	GTNNAC	1 cut(s)	379
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	445
HpyCH4V	TGCA	6 cut(s)	211, 367, 434, 497, 515, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 125, 524
HpyF3I	CTNAG	4 cut(s)	16, 158, 177, 519
HpySE526I	ACGT	1 cut(s)	445
Hsp92II	CATG	2 cut(s)	374, 581
KflI	GGGWCCC	1 cut(s)	603
Ksp22I	TGATCA	1 cut(s)	258
Kzo9I	GATC	4 cut(s)	258, 388, 466, 553
Lsp1109I	GCAGC	4 cut(s)	115, 446, 527, 571
LweI	GCATC	5 cut(s)	228, 354, 376, 484, 571
MaeI	CTAG	2 cut(s)	63, 593
MaeII	ACGT	1 cut(s)	445
MaeIII	GTNAC	2 cut(s)	161, 383
MalI	GATC	4 cut(s)	260, 390, 468, 555
MboI	GATC	4 cut(s)	258, 388, 466, 553
MboII	GAAGA	2 cut(s)	158, 503
MflI	RGATCY	2 cut(s)	466, 553
MluCI	AATT	3 cut(s)	51, 215, 326
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	3 cut(s)	248, 543, 591
MnlI	CCTC	6 cut(s)	172, 193, 424, 445, 511, 651
Mph1103I	ATGCAT	1 cut(s)	369
MseI	TTAA	2 cut(s)	399, 618
MspR9I	CCNGG	2 cut(s)	47, 243
Mva1269I	GAATGC	1 cut(s)	529
MvaI	CCWGG	2 cut(s)	47, 243
MwoI	GCNNNNNNNGC	3 cut(s)	95, 125, 524
NdeII	GATC	4 cut(s)	258, 388, 466, 553
NlaIII	CATG	2 cut(s)	374, 581
NlaIV	GGNNCC	4 cut(s)	247, 549, 604, 605
NmuCI	GTSAC	2 cut(s)	161, 383
NsiI	ATGCAT	1 cut(s)	369
NspV	TTCGAA	2 cut(s)	324, 489
PagI	TCATGA	1 cut(s)	577
PctI	GAATGC	1 cut(s)	529
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	130, 436, 517, 586
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PpuMI	RGGWCCY	1 cut(s)	603
Psp1406I	AACGTT	1 cut(s)	445
Psp5II	RGGWCCY	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	45, 241
PspGI	CCWGG	2 cut(s)	45, 241
PspN4I	GGNNCC	4 cut(s)	247, 549, 604, 605
PspPI	GGNCC	3 cut(s)	246, 458, 603
PspPPI	RGGWCCY	1 cut(s)	603
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	2 cut(s)	466, 553
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	399, 618
SatI	GCNGC	4 cut(s)	129, 435, 516, 585
Sau3AI	GATC	4 cut(s)	258, 388, 466, 553
Sau96I	GGNCC	3 cut(s)	246, 458, 603
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	47, 243
SfaNI	GCATC	5 cut(s)	228, 354, 376, 484, 571
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	2 cut(s)	324, 489
SinI	GGWCC	1 cut(s)	603
Sse9I	AATT	3 cut(s)	51, 215, 326
SspMI	CTAG	2 cut(s)	63, 593
StyD4I	CCNGG	2 cut(s)	45, 241
StyI	CCWWGG	1 cut(s)	557
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	448
TaqI	TCGA	2 cut(s)	324, 489
TasI	AATT	3 cut(s)	51, 215, 326
Tru1I	TTAA	2 cut(s)	399, 618
Tru9I	TTAA	2 cut(s)	399, 618
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	2 cut(s)	161, 383
TseI	GCWGC	4 cut(s)	128, 434, 515, 584
Tsp45I	GTSAC	2 cut(s)	161, 383
TspDTI	ATGAA	2 cut(s)	348, 566
TspRI	CASTG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	603
XspI	CTAG	2 cut(s)	63, 593
Zsp2I	ATGCAT	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.