Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

23271114 .. 23273021

Gene Structure 1908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCGAATCCTGCAGCCGTCACCGCCGGCAGAGGATCAATCACTCACGTCATATTCGACATGGACGGTCTTCTTCTCGATACTGAGAAGTTTTACACTGAGGTCCAAGAGATTATACTTGCTAGGTTCAATAAAAAGTTTGATTGGTCTCTCAAGGCTAAAATGATGGGTAGAAAAGCAATAGAAGCTGCCAGGATCTTTGTTGAAGAAAGCGGGATTAGCGACTCTCTTTCAGCTGAGGACTTTCTTGTCGAGAGAGAGTCAATGTTGCAAGACCTTTTCCCTACTAGTGAGCTCATGCCAGGGGCTAGTAGACTCATTAAGCATCTCCATGTAAAGAATATTCCAATATGTATTGCTACCGGTACTCACACACGGCATTATGATCTGAAAACCCAAAGACACAGAGAGCTTTTCTCATTGATGCATCACGTAGTTCGTGGTGATGATCCAGAGGTGAAGCAAGGAAAGCCTGCTCCTGACGGGTTTCTCGCTGCTGCTAGGAGATTTAAGGACGGTCCTGTGGATTCACAAAAGGTTCTGGTGTTTGAAGATGCTCCATCTGGAGTTCTTGCTGCTAAAAACGCCGGAATGAACGTGGTTATGGTACCGGATCCTAGACTAGATATCTCTCACCAAGATGTTGCAGATCAAATCATAACCTCTCTAGTCGATTTTAAACCGGAAGAGTGGGGCTTGCCTCCATTCGAAGATTCGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

240

Amino Acids

26.78

Weight (kDa)

5.59

Isoelectric Point (pI)

48.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	15 - 197	2.4e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	17 - 203	1.2e-19	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc65I	GGTACC	1 cut(s)	607
AccB1I	GGYRCC	1 cut(s)	607
AccI	GTMKAC	1 cut(s)	313
AciI	CCGC	2 cut(s)	24, 213
AclWI	GGATC	5 cut(s)	43, 203, 443, 608, 621
AfaI	GTAC	2 cut(s)	367, 609
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	130, 206, 551
AhlI	ACTAGT	1 cut(s)	287
AjiI	CACGTC	1 cut(s)	49
AjnI	CCWGG	2 cut(s)	191, 301
AluBI	AGCT	4 cut(s)	188, 236, 295, 412
AluI	AGCT	4 cut(s)	188, 236, 295, 412
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	5 cut(s)	43, 203, 443, 608, 621
ApeKI	GCWGC	5 cut(s)	14, 188, 494, 497, 575
AsiGI	ACCGGT	1 cut(s)	362
Asp718I	GGTACC	1 cut(s)	607
AspS9I	GGNCC	2 cut(s)	103, 518
AsuHPI	GGTGA	4 cut(s)	13, 455, 469, 626
AsuII	TTCGAA	2 cut(s)	708, 716
AvaII	GGWCC	2 cut(s)	103, 518
BamHI	GGATCC	1 cut(s)	613
BanI	GGYRCC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	297
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	297
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	26, 175, 481, 484, 562
BccI	CCATC	2 cut(s)	160, 568
BceAI	ACGGC	2 cut(s)	2, 392
BciT130I	CCWGG	2 cut(s)	193, 303
BcoDI	GTCTC	1 cut(s)	153
BcuI	ACTAGT	1 cut(s)	287
BfaI	CTAG	7 cut(s)	123, 288, 309, 501, 618, 623, 668
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	5 cut(s)	15, 189, 495, 498, 576
BlsI	GCNGC	5 cut(s)	16, 190, 496, 499, 577
Bme1390I	CCNGG	2 cut(s)	193, 303
Bme18I	GGWCC	2 cut(s)	103, 518
BmgBI	CACGTC	1 cut(s)	49
BmgT120I	GGNCC	2 cut(s)	103, 518
BmiI	GGNNCC	2 cut(s)	609, 615
BmrFI	CCNGG	2 cut(s)	193, 303
BmsI	GCATC	4 cut(s)	334, 414, 436, 544
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	2 cut(s)	708, 716
BpuEI	CTTGAG	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	3 cut(s)	362, 610, 682
Bse118I	RCCGGY	2 cut(s)	26, 362
BseBI	CCWGG	2 cut(s)	193, 303
BseDI	CCNNGG	1 cut(s)	302
BseMII	CTCAG	3 cut(s)	75, 90, 228
BseXI	GCAGC	5 cut(s)	26, 175, 481, 484, 562
BshNI	GGYRCC	1 cut(s)	607
BshTI	ACCGGT	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	5 cut(s)	27, 363, 588, 611, 683
BsmAI	GTCTC	1 cut(s)	153
Bso31I	GGTCTC	1 cut(s)	153
Bsp119I	TTCGAA	2 cut(s)	708, 716
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
BspACI	CCGC	2 cut(s)	24, 213
BspCNI	CTCAG	3 cut(s)	76, 91, 229
BspLI	GGNNCC	2 cut(s)	609, 615
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	5 cut(s)	43, 203, 443, 608, 621
BspT104I	TTCGAA	2 cut(s)	708, 716
BspT107I	GGYRCC	1 cut(s)	607
BspTNI	GGTCTC	1 cut(s)	153
BsrFI	RCCGGY	2 cut(s)	26, 362
BssAI	RCCGGY	2 cut(s)	26, 362
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
Bst2UI	CCWGG	2 cut(s)	193, 303
Bst4CI	ACNGT	2 cut(s)	68, 518
Bst6I	CTCTTC	1 cut(s)	681
BstBAI	YACGTR	1 cut(s)	433
BstBI	TTCGAA	2 cut(s)	708, 716
BstC8I	GCNNGC	3 cut(s)	28, 474, 698
BstDEI	CTNAG	3 cut(s)	84, 99, 237
BstKTI	GATC	6 cut(s)	38, 198, 388, 451, 616, 652
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 185, 219, 469, 584
BstNI	CCWGG	2 cut(s)	193, 303
BstSCI	CCNGG	2 cut(s)	191, 301
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	5 cut(s)	26, 175, 481, 484, 562
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	2 cut(s)	195, 613
BstYI	RGATCY	2 cut(s)	195, 613
BtrI	CACGTC	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	3 cut(s)	28, 474, 698
Cfr10I	RCCGGY	2 cut(s)	26, 362
Cfr13I	GGNCC	2 cut(s)	103, 518
Csp6I	GTAC	2 cut(s)	366, 608
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	3 cut(s)	61, 298, 332
CviJI	RGCY	9 cut(s)	17, 158, 188, 236, 295, 308, 412, 472, 696
CviKI_1	RGCY	9 cut(s)	17, 158, 188, 236, 295, 308, 412, 472, 696
CviQI	GTAC	2 cut(s)	366, 608
DdeI	CTNAG	3 cut(s)	84, 99, 237
DpnI	GATC	6 cut(s)	37, 197, 387, 450, 615, 651
DpnII	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
DraI	TTTAAA	1 cut(s)	679
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco31I	GGTCTC	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	103, 518
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	191, 301
EcoRV	GATATC	1 cut(s)	628
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	3 cut(s)	64, 301, 335
FaiI	YATR	9 cut(s)	53, 62, 116, 299, 333, 352, 384, 605, 659
FatI	CATG	3 cut(s)	60, 297, 331
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	5 cut(s)	15, 189, 495, 498, 576
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	5 cut(s)	15, 189, 495, 498, 576
FspBI	CTAG	7 cut(s)	123, 288, 309, 501, 618, 623, 668
GluI	GCNGC	5 cut(s)	15, 189, 495, 498, 576
GsuI	CTGGAG	1 cut(s)	585
HapII	CCGG	5 cut(s)	27, 363, 588, 611, 683
Hin1II	CATG	3 cut(s)	64, 301, 335
HinfI	GANTC	6 cut(s)	7, 224, 260, 315, 527, 713
HpaII	CCGG	5 cut(s)	27, 363, 588, 611, 683
HphI	GGTGA	4 cut(s)	13, 455, 469, 626
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	390
Hpy188III	TCNNGA	5 cut(s)	77, 253, 452, 479, 564
Hpy8I	GTNNAC	1 cut(s)	314
HpyCH4III	ACNGT	2 cut(s)	68, 518
HpyCH4IV	ACGT	3 cut(s)	48, 432, 597
HpyCH4V	TGCA	4 cut(s)	14, 271, 427, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 185, 219, 469, 584
HpyF3I	CTNAG	3 cut(s)	84, 99, 237
HpySE526I	ACGT	3 cut(s)	48, 432, 597
Hsp92II	CATG	3 cut(s)	64, 301, 335
KpnI	GGTACC	1 cut(s)	611
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
LmnI	GCTCC	2 cut(s)	481, 562
Lsp1109I	GCAGC	5 cut(s)	26, 175, 481, 484, 562
LweI	GCATC	4 cut(s)	334, 414, 436, 544
MaeI	CTAG	7 cut(s)	123, 288, 309, 501, 618, 623, 668
MaeII	ACGT	3 cut(s)	48, 432, 597
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	6 cut(s)	37, 197, 387, 450, 615, 651
MboI	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
MboII	GAAGA	6 cut(s)	62, 65, 218, 563, 698, 722
MflI	RGATCY	2 cut(s)	195, 613
MhlI	GDGCHC	1 cut(s)	297
MlyI	GAGTC	3 cut(s)	218, 269, 309
MnlI	CCTC	6 cut(s)	26, 94, 232, 448, 673, 711
Mph1103I	ATGCAT	1 cut(s)	429
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	3 cut(s)	321, 510, 678
MslI	CAYNNNNRTG	2 cut(s)	330, 639
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	5 cut(s)	27, 363, 588, 611, 683
MspR9I	CCNGG	2 cut(s)	193, 303
MvaI	CCWGG	2 cut(s)	193, 303
MwoI	GCNNNNNNNGC	5 cut(s)	23, 185, 219, 469, 584
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	3 cut(s)	64, 301, 335
NlaIV	GGNNCC	2 cut(s)	609, 615
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	429
NspV	TTCGAA	2 cut(s)	708, 716
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	7, 527, 713
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	16, 190, 496, 499, 577
PleI	GAGTC	3 cut(s)	218, 268, 309
PpsI	GAGTC	3 cut(s)	218, 268, 309
Ppu21I	YACGTR	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	191, 301
PspGI	CCWGG	2 cut(s)	191, 301
PspN4I	GGNNCC	2 cut(s)	609, 615
PspPI	GGNCC	2 cut(s)	103, 518
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	2 cut(s)	195, 613
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	367, 609
RsaNI	GTAC	2 cut(s)	366, 608
RseI	CAYNNNNRTG	2 cut(s)	330, 639
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	321, 510, 678
SatI	GCNGC	5 cut(s)	15, 189, 495, 498, 576
Sau3AI	GATC	6 cut(s)	35, 195, 385, 448, 613, 649
Sau96I	GGNCC	2 cut(s)	103, 518
SchI	GAGTC	3 cut(s)	218, 269, 309
ScrFI	CCNGG	2 cut(s)	193, 303
SduI	GDGCHC	1 cut(s)	297
SfaNI	GCATC	4 cut(s)	334, 414, 436, 544
SfcI	CTRYAG	1 cut(s)	12
SfuI	TTCGAA	2 cut(s)	708, 716
SinI	GGWCC	2 cut(s)	103, 518
SmiMI	CAYNNNNRTG	2 cut(s)	330, 639
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	287
SsiI	CCGC	2 cut(s)	24, 213
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	7 cut(s)	123, 288, 309, 501, 618, 623, 668
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	2 cut(s)	191, 301
TaaI	ACNGT	2 cut(s)	68, 518
TaiI	ACGT	3 cut(s)	51, 435, 600
TaqI	TCGA	7 cut(s)	5, 57, 78, 252, 672, 708, 716
TfiI	GAWTC	3 cut(s)	7, 527, 713
Tru1I	TTAA	3 cut(s)	321, 510, 678
Tru9I	TTAA	3 cut(s)	321, 510, 678
TscAI	CASTG	1 cut(s)	103
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	5 cut(s)	14, 188, 494, 497, 575
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	1 cut(s)	608
TspRI	CASTG	1 cut(s)	103
VpaK11BI	GGWCC	2 cut(s)	103, 518
XmiI	GTMKAC	1 cut(s)	313
XspI	CTAG	7 cut(s)	123, 288, 309, 501, 618, 623, 668
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.