Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

22984672 .. 22988817

Gene Structure 4146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCAAATCCCTCTGCAGCCAAAGCATCAATCACCCATGTCATTTTCGATATGGACGGCCTCTTACTGGACACAGAGAAGTTCTATACTGAAGTCCAGGAAATTATACTTGCTAGGTACAACAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCAGGTCTTTGTTGAAGACACTGGACTTAGTGACTCTCTTACTGCCGAGGACTTTCTGGTTGAAAGAGAGGCAATGTTGCAGAAGTTGTTTCCAACGAGCGAGCTGATGCCAGGGGCCAGCAGGTTGATCAGACATCTACATGCGAAAGCAATACCGTTTTGCTTGGCAACTGGCTCTAATAAGCGACATTTCGAATTGAAAACACAAAGCCATCGTGAGCTTTTTTCATTGATGCATCATGTTGTCAATGGTGACGATCCAGAAGTTAAGCAAGGCAAACCCTCACCGGATATTTTCCTTGCAGCGTCCAAACGTTTTGAGGGTGGGCCAATAGATCCAAATAAATGTCTTGTGTTTGAAGATGCACCCTCTGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTAATGGTTCCAGATCCAAGGTTGGACAGCTCTTTTCATGATGCTGCAGACCAGGTTCTGGGGTCCCTGTTGGATTTTAACCCAAGTGATTGGGGTTTGCCTCCATTTGACAATCCAGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

238

Amino Acids

26.17

Weight (kDa)

5.34

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	12 - 194	9.6e-25	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	14 - 200	2.5e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	294
AccB7I	CCANNNNNTGG	1 cut(s)	649
AclI	AACGTT	1 cut(s)	496
AclWI	GGATC	3 cut(s)	434, 512, 599
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	67, 649
AgsI	TTSAA	5 cut(s)	145, 197, 245, 382, 542
AjnI	CCWGG	3 cut(s)	96, 292, 642
AluBI	AGCT	6 cut(s)	179, 286, 403, 569, 621, 714
AluI	AGCT	6 cut(s)	179, 286, 403, 569, 621, 714
AlwI	GGATC	3 cut(s)	434, 512, 599
AlwNI	CAGNNNCTG	1 cut(s)	649
AoxI	GGCC	3 cut(s)	58, 297, 509
ApeKI	GCWGC	5 cut(s)	17, 179, 485, 566, 635
AspS9I	GGNCC	3 cut(s)	297, 509, 654
AsuHPI	GGTGA	3 cut(s)	25, 446, 459
AsuII	TTCGAA	1 cut(s)	375
AvaII	GGWCC	1 cut(s)	654
BbsI	GAAGAC	1 cut(s)	204
BbvI	GCAGC	5 cut(s)	29, 166, 497, 578, 622
BccI	CCATC	2 cut(s)	151, 402
BceAI	ACGGC	1 cut(s)	73
BciT130I	CCWGG	3 cut(s)	98, 294, 644
BclI	TGATCA	1 cut(s)	309
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	2 cut(s)	15, 636
BfuAI	ACCTGC	1 cut(s)	294
BisI	GCNGC	5 cut(s)	18, 180, 486, 567, 636
BlsI	GCNGC	5 cut(s)	19, 181, 487, 568, 637
Bme1390I	CCNGG	3 cut(s)	98, 294, 644
Bme18I	GGWCC	1 cut(s)	654
BmgT120I	GGNCC	3 cut(s)	297, 509, 654
BmiI	GGNNCC	4 cut(s)	298, 600, 655, 656
BmrFI	CCNGG	3 cut(s)	98, 294, 644
BmsI	GCATC	6 cut(s)	35, 279, 405, 427, 535, 622
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	576
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	228, 293, 608
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 649
Bse1I	ACTGG	3 cut(s)	72, 208, 358
Bse3DI	GCAATG	1 cut(s)	261
BseBI	CCWGG	3 cut(s)	98, 294, 644
BseDI	CCNNGG	3 cut(s)	228, 293, 608
BseLI	CCNNNNNNNGG	2 cut(s)	67, 649
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	3 cut(s)	72, 208, 358
BseXI	GCAGC	5 cut(s)	29, 166, 497, 578, 622
BshFI	GGCC	3 cut(s)	60, 299, 511
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	67, 649
BsmFI	GGGAC	1 cut(s)	640
BsmI	GAATGC	1 cut(s)	580
BsnI	GGCC	3 cut(s)	60, 299, 511
Bsp119I	TTCGAA	1 cut(s)	375
Bsp143I	GATC	4 cut(s)	309, 439, 517, 604
BspANI	GGCC	3 cut(s)	60, 299, 511
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	4 cut(s)	298, 600, 655, 656
BspMAI	CTGCAG	2 cut(s)	19, 640
BspMI	ACCTGC	1 cut(s)	294
BspPI	GGATC	3 cut(s)	434, 512, 599
BspT104I	TTCGAA	1 cut(s)	375
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	72, 208, 358
BssECI	CCNNGG	3 cut(s)	228, 293, 608
BssMI	GATC	4 cut(s)	309, 439, 517, 604
BssT1I	CCWWGG	1 cut(s)	608
Bst2UI	CCWGG	3 cut(s)	98, 294, 644
Bst4CI	ACNGT	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	375
BstC8I	GCNNGC	3 cut(s)	284, 301, 712
BstDEI	CTNAG	3 cut(s)	183, 209, 570
BstKTI	GATC	4 cut(s)	312, 442, 520, 607
BstMBI	GATC	4 cut(s)	309, 439, 517, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 146, 176, 575
BstNI	CCWGG	3 cut(s)	98, 294, 644
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	3 cut(s)	96, 292, 642
BstSFI	CTRYAG	2 cut(s)	15, 636
BstV1I	GCAGC	5 cut(s)	29, 166, 497, 578, 622
BstV2I	GAAGAC	1 cut(s)	204
BstX2I	RGATCY	2 cut(s)	517, 604
BstXI	CCANNNNNNTGG	1 cut(s)	681
BstYI	RGATCY	2 cut(s)	517, 604
BsuRI	GGCC	3 cut(s)	60, 299, 511
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	294
Cac8I	GCNNGC	3 cut(s)	284, 301, 712
CaiI	CAGNNNCTG	1 cut(s)	649
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	297, 509, 654
CseI	GACGC	1 cut(s)	477
CsiI	ACCWGGT	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	4 cut(s)	38, 323, 422, 629
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	183, 209, 570
DpnI	GATC	4 cut(s)	311, 441, 519, 606
DpnII	GATC	4 cut(s)	309, 439, 517, 604
Eco130I	CCWWGG	1 cut(s)	608
Eco47I	GGWCC	1 cut(s)	654
Eco57I	CTGAAG	1 cut(s)	111
EcoO109I	RGGNCCY	1 cut(s)	654
EcoRII	CCWGG	3 cut(s)	96, 292, 642
EcoT14I	CCWWGG	1 cut(s)	608
EcoT22I	ATGCAT	1 cut(s)	420
ErhI	CCWWGG	1 cut(s)	608
FaeI	CATG	4 cut(s)	41, 326, 425, 632
FaiI	YATR	7 cut(s)	39, 53, 87, 107, 324, 423, 630
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	37, 322, 421, 628
FbaI	TGATCA	1 cut(s)	309
Fnu4HI	GCNGC	5 cut(s)	18, 180, 486, 567, 636
Fsp4HI	GCNGC	5 cut(s)	18, 180, 486, 567, 636
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	5 cut(s)	18, 180, 486, 567, 636
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	3 cut(s)	60, 299, 511
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	477
Hin1II	CATG	4 cut(s)	41, 326, 425, 632
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	3 cut(s)	25, 446, 459
Hpy188I	TCNGA	1 cut(s)	314
Hpy188III	TCNNGA	5 cut(s)	398, 443, 555, 602, 629
HpyCH4III	ACNGT	1 cut(s)	339
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	17, 262, 418, 485, 548, 566, 638
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 146, 176, 575
HpyF3I	CTNAG	3 cut(s)	183, 209, 570
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	41, 326, 425, 632
KflI	GGGWCCC	1 cut(s)	654
Ksp22I	TGATCA	1 cut(s)	309
Kzo9I	GATC	4 cut(s)	309, 439, 517, 604
Lsp1109I	GCAGC	5 cut(s)	29, 166, 497, 578, 622
LweI	GCATC	6 cut(s)	35, 279, 405, 427, 535, 622
MabI	ACCWGGT	1 cut(s)	642
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	2 cut(s)	212, 434
MalI	GATC	4 cut(s)	311, 441, 519, 606
MboI	GATC	4 cut(s)	309, 439, 517, 604
MboII	GAAGA	2 cut(s)	209, 554
MflI	RGATCY	2 cut(s)	517, 604
MluCI	AATT	2 cut(s)	102, 377
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	3 cut(s)	299, 594, 642
MnlI	CCTC	8 cut(s)	22, 71, 223, 244, 475, 496, 562, 702
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	2 cut(s)	450, 669
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	98, 294, 644
Mva1269I	GAATGC	1 cut(s)	580
MvaI	CCWGG	3 cut(s)	98, 294, 644
MwoI	GCNNNNNNNGC	4 cut(s)	23, 146, 176, 575
NdeII	GATC	4 cut(s)	309, 439, 517, 604
NlaIII	CATG	4 cut(s)	41, 326, 425, 632
NlaIV	GGNNCC	4 cut(s)	298, 600, 655, 656
NmeAIII	GCCGAG	1 cut(s)	253
NmuCI	GTSAC	2 cut(s)	212, 434
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	375
PagI	TCATGA	1 cut(s)	628
PctI	GAATGC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	19, 181, 487, 568, 637
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	654
Psp1406I	AACGTT	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	654
Psp6I	CCWGG	3 cut(s)	96, 292, 642
PspGI	CCWGG	3 cut(s)	96, 292, 642
PspN4I	GGNNCC	4 cut(s)	298, 600, 655, 656
PspPI	GGNCC	3 cut(s)	297, 509, 654
PspPPI	RGGWCCY	1 cut(s)	654
PstI	CTGCAG	2 cut(s)	19, 640
PstNI	CAGNNNCTG	1 cut(s)	649
PsuI	RGATCY	2 cut(s)	517, 604
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	450, 669
SatI	GCNGC	5 cut(s)	18, 180, 486, 567, 636
Sau3AI	GATC	4 cut(s)	309, 439, 517, 604
Sau96I	GGNCC	3 cut(s)	297, 509, 654
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	98, 294, 644
SexAI	ACCWGGT	1 cut(s)	642
SfaNI	GCATC	6 cut(s)	35, 279, 405, 427, 535, 622
SfcI	CTRYAG	2 cut(s)	15, 636
SfuI	TTCGAA	1 cut(s)	375
SinI	GGWCC	1 cut(s)	654
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	2 cut(s)	102, 377
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	3 cut(s)	96, 292, 642
StyI	CCWWGG	1 cut(s)	608
TaaI	ACNGT	1 cut(s)	339
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	2 cut(s)	48, 375
TasI	AATT	2 cut(s)	102, 377
Tru1I	TTAA	2 cut(s)	450, 669
Tru9I	TTAA	2 cut(s)	450, 669
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	2 cut(s)	212, 434
TseI	GCWGC	5 cut(s)	17, 179, 485, 566, 635
Tsp45I	GTSAC	2 cut(s)	212, 434
TspDTI	ATGAA	2 cut(s)	399, 617
TspRI	CASTG	1 cut(s)	208
Van91I	CCANNNNNTGG	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	654
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.