Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

18337082 .. 18340924

Gene Structure 3843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00347150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGCCAAGACTCCTCTGCCAACGACTAGCCTTCCCAATTCCCATAGCTACTTCACCAATACCTTTGCCTTGTTTCTCCGCCAAATCTCTAAACTTTTCCAAAAACCCAACACCTTATTTGGCCATGGCAAATCCCTCTGCAGCCAAAGCACCAATCACCCATGTCATTTTCGATATGGACGGCCTCTTACTAGACACAGAGAAATTCTATACTGAAGTCCAGGAAATTATACTTGCTAGGTACAATAAAACTTTTGATTGGGCTTTGAAAGCAAAAATGATGGGAAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGACACTGGACTTAGTGACTCTCTTACTGCTGAGGACTTTCTGGTTGAAAGAGAGGCAATGTTGCAGAAATTGTTTCCAACAAGCGAGCTGATGCCAGGGGCCAGCAGGTTGATCAGACATCTACATGCGAAAGCAATACCCTTTTGCTTGGCAACTGGCTCTAATAAGCGACATTTCGAATTGAAAACACAAAGCCATCGTGAGCTTTTTTCATTGATGCGTCATGTTGTCAACGGTGACGATCCAGAAGTTAAGCAAGGCAAACCCTCACCAGATATTTTCCTTGCAGCGTCCAAACGTTTTGAGGGTGGGCCAATAGATCCAAATAAATGTCTTGTGTTCGAAGACGCACCCTCTGGAGTTCTTGCAGCTAAGAATGCTGGAATGTCTGTTGTAATGGTTCCAGATCCAAGGTTGGACAGCTCTTTTCATGATGCTGCAGACCAGATTCTGGGGTCCCTGTTGGATTTTAACCCAAGTGATTGGGGTTTGCCTCCATTTGACAATCCAGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

279

Amino Acids

30.74

Weight (kDa)

6.17

Isoelectric Point (pI)

46.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	53 - 235	2.9e-24	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	55 - 241	3.2e-18	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	772
AciI	CCGC	1 cut(s)	78
AclI	AACGTT	1 cut(s)	619
AclWI	GGATC	3 cut(s)	557, 635, 722
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	772
AgsI	TTSAA	4 cut(s)	268, 320, 368, 505
AjnI	CCWGG	2 cut(s)	219, 415
AluBI	AGCT	7 cut(s)	47, 302, 409, 526, 692, 744, 837
AluI	AGCT	7 cut(s)	47, 302, 409, 526, 692, 744, 837
AlwI	GGATC	3 cut(s)	557, 635, 722
AlwNI	CAGNNNCTG	1 cut(s)	772
Ama87I	CYCGRG	1 cut(s)	306
AoxI	GGCC	4 cut(s)	120, 181, 420, 632
ApeKI	GCWGC	5 cut(s)	140, 302, 608, 689, 758
ApoI	RAATTY	1 cut(s)	203
AspS9I	GGNCC	3 cut(s)	420, 632, 777
AsuHPI	GGTGA	4 cut(s)	45, 148, 569, 582
AsuII	TTCGAA	2 cut(s)	498, 663
AvaI	CYCGRG	1 cut(s)	306
AvaII	GGWCC	1 cut(s)	777
BalI	TGGCCA	1 cut(s)	122
BbsI	GAAGAC	2 cut(s)	327, 672
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	5 cut(s)	152, 289, 620, 701, 745
BccI	CCATC	2 cut(s)	274, 525
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	2 cut(s)	221, 417
BclI	TGATCA	1 cut(s)	432
BfaI	CTAG	3 cut(s)	26, 191, 237
BfmI	CTRYAG	2 cut(s)	138, 759
BfuAI	ACCTGC	1 cut(s)	417
BisI	GCNGC	5 cut(s)	141, 303, 609, 690, 759
BlsI	GCNGC	5 cut(s)	142, 304, 610, 691, 760
Bme1390I	CCNGG	2 cut(s)	221, 417
Bme18I	GGWCC	1 cut(s)	777
BmeT110I	CYCGRG	1 cut(s)	306
BmgT120I	GGNCC	3 cut(s)	420, 632, 777
BmiI	GGNNCC	4 cut(s)	421, 723, 778, 779
BmrFI	CCNGG	2 cut(s)	221, 417
BmsI	GCATC	3 cut(s)	402, 528, 745
BpiI	GAAGAC	2 cut(s)	327, 672
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	351
Bpu14I	TTCGAA	2 cut(s)	498, 663
BsaJI	CCNNGG	3 cut(s)	123, 416, 731
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse1I	ACTGG	2 cut(s)	331, 481
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	2 cut(s)	221, 417
BseDI	CCNNGG	3 cut(s)	123, 416, 731
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	2 cut(s)	331, 481
BseXI	GCAGC	5 cut(s)	152, 289, 620, 701, 745
BshFI	GGCC	4 cut(s)	122, 183, 422, 634
BsiHKCI	CYCGRG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	763
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	4 cut(s)	122, 183, 422, 634
BsoBI	CYCGRG	1 cut(s)	306
Bsp119I	TTCGAA	2 cut(s)	498, 663
Bsp143I	GATC	4 cut(s)	432, 562, 640, 727
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	4 cut(s)	122, 183, 422, 634
BspCNI	CTCAG	1 cut(s)	343
BspHI	TCATGA	1 cut(s)	751
BspLI	GGNNCC	4 cut(s)	421, 723, 778, 779
BspMAI	CTGCAG	2 cut(s)	142, 763
BspMI	ACCTGC	1 cut(s)	417
BspPI	GGATC	3 cut(s)	557, 635, 722
BspT104I	TTCGAA	2 cut(s)	498, 663
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	331, 481
BssECI	CCNNGG	3 cut(s)	123, 416, 731
BssMI	GATC	4 cut(s)	432, 562, 640, 727
BssT1I	CCWWGG	2 cut(s)	123, 731
Bst2UI	CCWGG	2 cut(s)	221, 417
Bst4CI	ACNGT	1 cut(s)	557
BstBI	TTCGAA	2 cut(s)	498, 663
BstC8I	GCNNGC	3 cut(s)	407, 424, 835
BstDEI	CTNAG	3 cut(s)	332, 351, 693
BstDSI	CCRYGG	1 cut(s)	123
BstKTI	GATC	4 cut(s)	435, 565, 643, 730
BstMBI	GATC	4 cut(s)	432, 562, 640, 727
BstMWI	GCNNNNNNNGC	4 cut(s)	146, 269, 299, 698
BstNI	CCWGG	2 cut(s)	221, 417
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	219, 415
BstSFI	CTRYAG	2 cut(s)	138, 759
BstV1I	GCAGC	5 cut(s)	152, 289, 620, 701, 745
BstV2I	GAAGAC	2 cut(s)	327, 672
BstX2I	RGATCY	2 cut(s)	640, 727
BstXI	CCANNNNNNTGG	1 cut(s)	804
BstYI	RGATCY	2 cut(s)	640, 727
BsuRI	GGCC	4 cut(s)	122, 183, 422, 634
BtgI	CCRYGG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	417
Cac8I	GCNNGC	3 cut(s)	407, 424, 835
CaiI	CAGNNNCTG	1 cut(s)	772
CciI	TCATGA	1 cut(s)	751
Cfr13I	GGNCC	3 cut(s)	420, 632, 777
CseI	GACGC	3 cut(s)	530, 600, 677
Csp6I	GTAC	1 cut(s)	241
CviAII	CATG	5 cut(s)	124, 161, 446, 545, 752
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	3 cut(s)	332, 351, 693
DpnI	GATC	4 cut(s)	434, 564, 642, 729
DpnII	GATC	4 cut(s)	432, 562, 640, 727
EaeI	YGGCCR	1 cut(s)	120
EciI	GGCGGA	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	123, 731
Eco47I	GGWCC	1 cut(s)	777
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	777
EcoRII	CCWGG	2 cut(s)	219, 415
EcoT14I	CCWWGG	2 cut(s)	123, 731
ErhI	CCWWGG	2 cut(s)	123, 731
FaeI	CATG	5 cut(s)	127, 164, 449, 548, 755
FaiI	YATR	9 cut(s)	44, 125, 162, 176, 210, 230, 447, 546, 753
FaqI	GGGAC	1 cut(s)	763
FatI	CATG	5 cut(s)	123, 160, 445, 544, 751
FbaI	TGATCA	1 cut(s)	432
Fnu4HI	GCNGC	5 cut(s)	141, 303, 609, 690, 759
Fsp4HI	GCNGC	5 cut(s)	141, 303, 609, 690, 759
FspBI	CTAG	3 cut(s)	26, 191, 237
GluI	GCNGC	5 cut(s)	141, 303, 609, 690, 759
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	4 cut(s)	122, 183, 422, 634
HgaI	GACGC	3 cut(s)	530, 600, 677
Hin1II	CATG	5 cut(s)	127, 164, 449, 548, 755
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HinfI	GANTC	3 cut(s)	9, 338, 769
HphI	GGTGA	4 cut(s)	45, 148, 569, 582
Hpy166II	GTNNAC	1 cut(s)	553
Hpy188I	TCNGA	1 cut(s)	437
Hpy188III	TCNNGA	5 cut(s)	521, 566, 678, 725, 752
Hpy8I	GTNNAC	1 cut(s)	553
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	5 cut(s)	140, 385, 608, 689, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	146, 269, 299, 698
HpyF3I	CTNAG	3 cut(s)	332, 351, 693
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	5 cut(s)	127, 164, 449, 548, 755
KflI	GGGWCCC	1 cut(s)	777
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	432, 562, 640, 727
Lsp1109I	GCAGC	5 cut(s)	152, 289, 620, 701, 745
LweI	GCATC	3 cut(s)	402, 528, 745
MaeI	CTAG	3 cut(s)	26, 191, 237
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	2 cut(s)	335, 557
MalI	GATC	4 cut(s)	434, 564, 642, 729
MboI	GATC	4 cut(s)	432, 562, 640, 727
MboII	GAAGA	2 cut(s)	332, 677
MflI	RGATCY	2 cut(s)	640, 727
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	5 cut(s)	36, 203, 225, 389, 500
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	3, 332
MmeI	TCCRAC	3 cut(s)	422, 717, 765
MnlI	CCTC	9 cut(s)	23, 145, 194, 346, 367, 598, 619, 685, 825
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	573, 792
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	221, 417
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	221, 417
MwoI	GCNNNNNNNGC	4 cut(s)	146, 269, 299, 698
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	4 cut(s)	432, 562, 640, 727
NlaIII	CATG	5 cut(s)	127, 164, 449, 548, 755
NlaIV	GGNNCC	4 cut(s)	421, 723, 778, 779
NmuCI	GTSAC	2 cut(s)	335, 557
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	2 cut(s)	498, 663
PagI	TCATGA	1 cut(s)	751
PctI	GAATGC	1 cut(s)	703
PfeI	GAWTC	1 cut(s)	769
PflMI	CCANNNNNTGG	1 cut(s)	772
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	5 cut(s)	142, 304, 610, 691, 760
PleI	GAGTC	2 cut(s)	3, 332
PpsI	GAGTC	2 cut(s)	3, 332
PpuMI	RGGWCCY	1 cut(s)	777
Psp1406I	AACGTT	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	777
Psp6I	CCWGG	2 cut(s)	219, 415
PspGI	CCWGG	2 cut(s)	219, 415
PspN4I	GGNNCC	4 cut(s)	421, 723, 778, 779
PspPI	GGNCC	3 cut(s)	420, 632, 777
PspPPI	RGGWCCY	1 cut(s)	777
PstI	CTGCAG	2 cut(s)	142, 763
PstNI	CAGNNNCTG	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	640, 727
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	573, 792
SatI	GCNGC	5 cut(s)	141, 303, 609, 690, 759
Sau3AI	GATC	4 cut(s)	432, 562, 640, 727
Sau96I	GGNCC	3 cut(s)	420, 632, 777
SchI	GAGTC	2 cut(s)	3, 332
ScrFI	CCNGG	2 cut(s)	221, 417
SfaNI	GCATC	3 cut(s)	402, 528, 745
SfcI	CTRYAG	2 cut(s)	138, 759
SfuI	TTCGAA	2 cut(s)	498, 663
SinI	GGWCC	1 cut(s)	777
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	5 cut(s)	36, 203, 225, 389, 500
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	3 cut(s)	26, 191, 237
StyD4I	CCNGG	2 cut(s)	219, 415
StyI	CCWWGG	2 cut(s)	123, 731
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	3 cut(s)	171, 498, 663
TasI	AATT	5 cut(s)	36, 203, 225, 389, 500
TfiI	GAWTC	1 cut(s)	769
Tru1I	TTAA	2 cut(s)	573, 792
Tru9I	TTAA	2 cut(s)	573, 792
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	2 cut(s)	335, 557
TseI	GCWGC	5 cut(s)	140, 302, 608, 689, 758
Tsp45I	GTSAC	2 cut(s)	335, 557
TspDTI	ATGAA	2 cut(s)	522, 740
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	772
VpaK11BI	GGWCC	1 cut(s)	777
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	1 cut(s)	449
XspI	CTAG	3 cut(s)	26, 191, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.