Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

6390354 .. 6398302

Gene Structure 7949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGACAAATCCATCTCAAGCTGTTTCGAGCAGAGGACCAATCACTCATGTCATCTTCGATATGGACGGCCTCTTACTCGACACAGAGAAGTTCTATACTGAAGTCCAGGAAATTATACTGGCTAGGTATAATAAAACTTTTGATTGGTCTCTGAAAGCCAAAATGATGGGGAAGAAAGCAATAGAAGCTGCTCGGGTCTTTGTTGAAGAGACTGGAATTAGTGACACCCTTACTGCTGAGGACTTTCTAGTTGAAAGAGAGGCACAGCTGCAGAGTATGTTTCCGACAAGCGATCTTATGCCAGGGGCTAGCCGCTTGATCAGGCATCTTCATGAGAAAGGAATACCGTTTGCCTTAGCAACAGGTTCTCATAAGCGGCACTTTGAATTGAAAACACAACGCCATGGCGAACTTTTTTCATTGATGCATCATGTTGTCCTTGGCGATGATCCAGAAGTTAAACAAGGGAAGCCCTCGCCGGATATATTCCTTGCAGCAGCCAAAAGATTTGAGGGTGCCCCAATTGATCCAAAGAAAATTCTGGTGTTTGAAGATGCACCTGCTGGAGTTCTTGCAGCTAAAAATGCTGGGATGTCGGTTGTCATGGTTCCAGATCCAAGGCTGGACAGCTCTTTTTATGATATTGCAGACCAAGTTGTGAAATCCCTGTTGGATTTAAACCCAAATGATTGGGGTCTTCCTCCATTTGACAATCCAGCGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

242

Amino Acids

26.71

Weight (kDa)

5.48

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
Acc36I	ACCTGC	1 cut(s)	568
AccB1I	GGYRCC	1 cut(s)	515
AciI	CCGC	2 cut(s)	313, 376
AclWI	GGATC	3 cut(s)	443, 521, 608
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	1 cut(s)	120
AgsI	TTSAA	5 cut(s)	206, 254, 386, 391, 551
AjnI	CCWGG	2 cut(s)	105, 301
AjuI	GAANNNNNNNTTGG	2 cut(s)	653, 685
AluBI	AGCT	6 cut(s)	20, 188, 268, 578, 630, 723
AluI	AGCT	6 cut(s)	20, 188, 268, 578, 630, 723
Alw26I	GTCTC	2 cut(s)	153, 203
AlwI	GGATC	3 cut(s)	443, 521, 608
Ama87I	CYCGRG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	5 cut(s)	188, 268, 494, 497, 575
ApoI	RAATTY	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	35
AsuNHI	GCTAGC	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	689
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	175, 255, 506, 509, 587
BccI	CCATC	2 cut(s)	19, 160
BceAI	ACGGC	1 cut(s)	82
BciT130I	CCWGG	2 cut(s)	107, 303
BclI	TGATCA	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	153, 203
BfaI	CTAG	3 cut(s)	123, 248, 309
BfmI	CTRYAG	1 cut(s)	269
BfuAI	ACCTGC	1 cut(s)	568
BisI	GCNGC	7 cut(s)	189, 269, 313, 377, 495, 498, 576
BlsI	GCNGC	7 cut(s)	190, 270, 314, 378, 496, 499, 577
Bme1390I	CCNGG	2 cut(s)	107, 303
Bme18I	GGWCC	1 cut(s)	35
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	517, 609
BmrFI	CCNGG	2 cut(s)	107, 303
BmsI	GCATC	4 cut(s)	334, 414, 436, 544
BmtI	GCTAGC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	689
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	2 cut(s)	237, 355
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	302, 403, 439, 617
Bse1I	ACTGG	2 cut(s)	123, 217
BseBI	CCWGG	2 cut(s)	107, 303
BseDI	CCNNGG	4 cut(s)	302, 403, 439, 617
BseGI	GGATG	1 cut(s)	597
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	2 cut(s)	123, 217
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	5 cut(s)	175, 255, 506, 509, 587
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	515
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	479
BsmAI	GTCTC	2 cut(s)	153, 203
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp143I	GATC	5 cut(s)	292, 318, 448, 526, 613
Bsp19I	CCATGG	1 cut(s)	403
BspACI	CCGC	2 cut(s)	313, 376
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	229
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	517, 609
BspMAI	CTGCAG	1 cut(s)	273
BspMI	ACCTGC	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	312
BspPI	GGATC	3 cut(s)	443, 521, 608
BspT107I	GGYRCC	1 cut(s)	515
BspTNI	GGTCTC	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	123, 217
BssECI	CCNNGG	4 cut(s)	302, 403, 439, 617
BssMI	GATC	5 cut(s)	292, 318, 448, 526, 613
BssT1I	CCWWGG	3 cut(s)	403, 439, 617
Bst2UI	CCWGG	2 cut(s)	107, 303
Bst4CI	ACNGT	1 cut(s)	348
Bst6I	CTCTTC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	310, 721
BstDEI	CTNAG	2 cut(s)	237, 355
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	597
BstKTI	GATC	5 cut(s)	295, 321, 451, 529, 616
BstMAI	GTCTC	2 cut(s)	153, 203
BstMBI	GATC	5 cut(s)	292, 318, 448, 526, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 584
BstNI	CCWGG	2 cut(s)	107, 303
BstSCI	CCNGG	2 cut(s)	105, 301
BstSFI	CTRYAG	1 cut(s)	269
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	5 cut(s)	175, 255, 506, 509, 587
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	1 cut(s)	613
BstXI	CCANNNNNNTGG	2 cut(s)	166, 690
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	69
BtgI	CCRYGG	1 cut(s)	403
BtgZI	GCGATG	1 cut(s)	459
BtsCI	GGATG	1 cut(s)	597
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	2 cut(s)	310, 721
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	35
CviAII	CATG	5 cut(s)	47, 332, 404, 431, 604
DdeI	CTNAG	2 cut(s)	237, 355
DpnI	GATC	5 cut(s)	294, 320, 450, 528, 615
DpnII	GATC	5 cut(s)	292, 318, 448, 526, 613
DraI	TTTAAA	1 cut(s)	678
Eam1104I	CTCTTC	1 cut(s)	201
EarI	CTCTTC	1 cut(s)	201
Eco130I	CCWWGG	3 cut(s)	403, 439, 617
Eco31I	GGTCTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	105, 301
EcoT14I	CCWWGG	3 cut(s)	403, 439, 617
EcoT22I	ATGCAT	1 cut(s)	429
ErhI	CCWWGG	3 cut(s)	403, 439, 617
FaeI	CATG	5 cut(s)	50, 335, 407, 434, 607
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FatI	CATG	5 cut(s)	46, 331, 403, 430, 603
FbaI	TGATCA	1 cut(s)	318
Fnu4HI	GCNGC	7 cut(s)	189, 269, 313, 377, 495, 498, 576
FokI	GGATG	1 cut(s)	604
Fsp4HI	GCNGC	7 cut(s)	189, 269, 313, 377, 495, 498, 576
FspBI	CTAG	3 cut(s)	123, 248, 309
GluI	GCNGC	7 cut(s)	189, 269, 313, 377, 495, 498, 576
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	5 cut(s)	50, 335, 407, 434, 607
HpaII	CCGG	1 cut(s)	479
Hpy188I	TCNGA	2 cut(s)	153, 285
Hpy188III	TCNNGA	3 cut(s)	332, 452, 611
HpyCH4III	ACNGT	1 cut(s)	348
HpyCH4V	TGCA	6 cut(s)	271, 427, 494, 557, 575, 647
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 584
HpyF3I	CTNAG	2 cut(s)	237, 355
Hsp92II	CATG	5 cut(s)	50, 335, 407, 434, 607
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	5 cut(s)	292, 318, 448, 526, 613
Lsp1109I	GCAGC	5 cut(s)	175, 255, 506, 509, 587
LweI	GCATC	4 cut(s)	334, 414, 436, 544
MaeI	CTAG	3 cut(s)	123, 248, 309
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	5 cut(s)	294, 320, 450, 528, 615
MboI	GATC	5 cut(s)	292, 318, 448, 526, 613
MboII	GAAGA	6 cut(s)	46, 184, 218, 320, 563, 689
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	5 cut(s)	111, 216, 386, 522, 537
MmeI	TCCRAC	2 cut(s)	308, 651
MnlI	CCTC	7 cut(s)	26, 80, 232, 253, 484, 505, 711
Mph1103I	ATGCAT	1 cut(s)	429
MseI	TTAA	2 cut(s)	459, 677
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	479
MspR9I	CCNGG	2 cut(s)	107, 303
MunI	CAATTG	1 cut(s)	522
MvaI	CCWGG	2 cut(s)	107, 303
MwoI	GCNNNNNNNGC	2 cut(s)	185, 584
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	5 cut(s)	292, 318, 448, 526, 613
NheI	GCTAGC	1 cut(s)	308
NlaIII	CATG	5 cut(s)	50, 335, 407, 434, 607
NlaIV	GGNNCC	2 cut(s)	517, 609
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	429
PagI	TCATGA	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	568
PfoI	TCCNGGA	1 cut(s)	105
PkrI	GCNGC	7 cut(s)	190, 270, 314, 378, 496, 499, 577
Psp6I	CCWGG	2 cut(s)	105, 301
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	105, 301
PspN4I	GGNNCC	2 cut(s)	517, 609
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	613
PvuII	CAGCTG	1 cut(s)	268
RseI	CAYNNNNRTG	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	459, 677
SatI	GCNGC	7 cut(s)	189, 269, 313, 377, 495, 498, 576
Sau3AI	GATC	5 cut(s)	292, 318, 448, 526, 613
Sau96I	GGNCC	1 cut(s)	35
ScrFI	CCNGG	2 cut(s)	107, 303
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	9 cut(s)	22, 128, 190, 270, 367, 562, 580, 632, 725
SfaNI	GCATC	4 cut(s)	334, 414, 436, 544
SfcI	CTRYAG	1 cut(s)	269
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
Sse9I	AATT	5 cut(s)	111, 216, 386, 522, 537
SsiI	CCGC	2 cut(s)	313, 376
SspMI	CTAG	3 cut(s)	123, 248, 309
StyD4I	CCNGG	2 cut(s)	105, 301
StyI	CCWWGG	3 cut(s)	403, 439, 617
TaaI	ACNGT	1 cut(s)	348
TaqI	TCGA	3 cut(s)	26, 57, 78
TasI	AATT	5 cut(s)	111, 216, 386, 522, 537
TauI	GCSGC	2 cut(s)	315, 379
Tru1I	TTAA	2 cut(s)	459, 677
Tru9I	TTAA	2 cut(s)	459, 677
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	5 cut(s)	188, 268, 494, 497, 575
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	320, 408
VpaK11BI	GGWCC	1 cut(s)	35
XapI	RAATTY	1 cut(s)	537
XspI	CTAG	3 cut(s)	123, 248, 309
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.