Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009440

Physical Location & Seq

Genomic Coordinates Reverse (-)

24380187 .. 24391199

Gene Structure 11013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG112900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGACGAGATCATTATTTTAAATTATGAGGTTATCCATGAGTCCATGACACGACGTGCTAGCCCAAAAAGAACTAAGCATGCCAAGTTACTCTCCTCTAATAAGCGACATTTCGAATTGAAAACACAAAGCCATCATGAGCTTTTTTCATTGATGCATCATGTTGTCAGCGGTGATGATCCAGAAGTTAAGCAAGGCAAACCCTCACCGGATATTTTCCTTGCAGCGTCCAAACGTTTTGAGGGTGGGCCAGTAGATCCAAATAAATGTCTTGTGTTCGAAGATGCACCCTCTGGAGTTCTTGCAGCTAAGAATGCTGGAATATCTGTTGTAATGGTTCCAGATCCAAGGTTGGACAGCTCTTTTCATGATGCTGCAGACCAGGTTCTGGGGTCCCTGTTGGATTTTAACCCAAGTGATTGGGGTTTGCCTCCATTTGACAATCCAGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005975 GO:0006066 GO:0006071 GO:0006114 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019400 GO:0019401 GO:0019751 GO:0034637 GO:0042578 GO:0043136 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046173 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2

Protein Analysis

151

Amino Acids

16.64

Weight (kDa)

5.86

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	31 - 113	2e-08	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	32 - 107	1.1e-09	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25840 AT5G57440
fragaria_vesca	FvH4_4g08210
malus_domestica	MD13G1253800.v1.1
prunus_persica	Prupe.1G086000_v2.0.a1
pyrus_communis	pycom13g22440
rosa_chinensis	RchiOBHm_Chr4g0402461 RchiOBHm_Chr6g0266651 RchiOBHm_Chr6g0273661
rosa_laevigata	RLG00000009082
rosa_multiflora	Rmu_co8208732.1_g000001 Rmu_ssc0000330.1_g000027
rosa_roxburghii	Rroxscaffold_4G00321760 Rroxscaffold_5G00347150
rosa_rugosa	Rorug02G0591300 Rorug04G0035600 Rorug05G0169700
rosa_samantha	Rh4AG112900 Rh4BG105400 Rh4CG119800 Rh4DG104700
rosa_wichuraiana	Rw4G009050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	388
AciI	CCGC	1 cut(s)	171
AclI	AACGTT	1 cut(s)	235
AclWI	GGATC	3 cut(s)	173, 251, 338
AdeI	CACNNNGTG	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	4 cut(s)	142, 308, 360, 453
AluI	AGCT	4 cut(s)	142, 308, 360, 453
AlwI	GGATC	3 cut(s)	173, 251, 338
AlwNI	CAGNNNCTG	1 cut(s)	388
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	224, 305, 374
AspS9I	GGNCC	2 cut(s)	248, 393
AsuHPI	GGTGA	2 cut(s)	185, 198
AsuII	TTCGAA	2 cut(s)	114, 279
AsuNHI	GCTAGC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	393
BbvI	GCAGC	3 cut(s)	236, 317, 361
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	383
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	3 cut(s)	225, 306, 375
BlsI	GCNGC	3 cut(s)	226, 307, 376
Bme1390I	CCNGG	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	248, 393
BmiI	GGNNCC	3 cut(s)	339, 394, 395
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	4 cut(s)	144, 166, 274, 361
BmtI	GCTAGC	1 cut(s)	63
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	2 cut(s)	114, 279
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	347
BseLI	CCNNNNNNNGG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	85
BseXI	GCAGC	3 cut(s)	236, 317, 361
BshFI	GGCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	209
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	1 cut(s)	388
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	250
Bsp119I	TTCGAA	2 cut(s)	114, 279
Bsp143I	GATC	4 cut(s)	9, 178, 256, 343
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	250
BspHI	TCATGA	2 cut(s)	136, 367
BspLI	GGNNCC	3 cut(s)	339, 394, 395
BspMAI	CTGCAG	1 cut(s)	379
BspOI	GCTAGC	1 cut(s)	63
BspPI	GGATC	3 cut(s)	173, 251, 338
BspT104I	TTCGAA	2 cut(s)	114, 279
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	4 cut(s)	9, 178, 256, 343
BssT1I	CCWWGG	1 cut(s)	347
Bst2UI	CCWGG	1 cut(s)	383
BstBI	TTCGAA	2 cut(s)	114, 279
BstC8I	GCNNGC	3 cut(s)	61, 81, 451
BstDEI	CTNAG	2 cut(s)	75, 309
BstKTI	GATC	4 cut(s)	12, 181, 259, 346
BstMBI	GATC	4 cut(s)	9, 178, 256, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	236, 317, 361
BstX2I	RGATCY	2 cut(s)	256, 343
BstXI	CCANNNNNNTGG	1 cut(s)	420
BstYI	RGATCY	2 cut(s)	256, 343
BsuRI	GGCC	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	56
Cac8I	GCNNGC	3 cut(s)	61, 81, 451
CaiI	CAGNNNCTG	1 cut(s)	388
CciI	TCATGA	2 cut(s)	136, 367
Cfr13I	GGNCC	2 cut(s)	248, 393
CseI	GACGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	381
CviAII	CATG	6 cut(s)	38, 46, 80, 137, 161, 368
CviJI	RGCY	7 cut(s)	63, 132, 142, 250, 308, 360, 453
CviKI_1	RGCY	7 cut(s)	63, 132, 142, 250, 308, 360, 453
DdeI	CTNAG	2 cut(s)	75, 309
DpnI	GATC	4 cut(s)	11, 180, 258, 345
DpnII	GATC	4 cut(s)	9, 178, 256, 343
DraI	TTTAAA	1 cut(s)	21
DraIII	CACNNNGTG	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	381
EcoT14I	CCWWGG	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	347
FaeI	CATG	6 cut(s)	41, 49, 83, 140, 164, 371
FaiI	YATR	7 cut(s)	27, 39, 47, 81, 138, 162, 369
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	6 cut(s)	37, 45, 79, 136, 160, 367
Fnu4HI	GCNGC	3 cut(s)	225, 306, 375
Fsp4HI	GCNGC	3 cut(s)	225, 306, 375
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	3 cut(s)	225, 306, 375
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	1 cut(s)	216
Hin1II	CATG	6 cut(s)	41, 49, 83, 140, 164, 371
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	185, 198
Hpy188III	TCNNGA	5 cut(s)	137, 182, 294, 341, 368
Hpy99I	CGWCG	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	55, 235
HpyCH4V	TGCA	5 cut(s)	157, 224, 287, 305, 377
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	2 cut(s)	75, 309
HpySE526I	ACGT	2 cut(s)	55, 235
Hsp92II	CATG	6 cut(s)	41, 49, 83, 140, 164, 371
KflI	GGGWCCC	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	9, 178, 256, 343
Lsp1109I	GCAGC	3 cut(s)	236, 317, 361
LweI	GCATC	4 cut(s)	144, 166, 274, 361
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	2 cut(s)	55, 235
MaeIII	GTNAC	1 cut(s)	87
MalI	GATC	4 cut(s)	11, 180, 258, 345
MboI	GATC	4 cut(s)	9, 178, 256, 343
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	2 cut(s)	256, 343
MluCI	AATT	2 cut(s)	22, 116
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	2 cut(s)	333, 381
MnlI	CCTC	6 cut(s)	22, 106, 214, 235, 301, 441
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	3 cut(s)	20, 189, 408
MspA1I	CMGCKG	1 cut(s)	171
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	4 cut(s)	9, 178, 256, 343
NheI	GCTAGC	1 cut(s)	59
NlaIII	CATG	6 cut(s)	41, 49, 83, 140, 164, 371
NlaIV	GGNNCC	3 cut(s)	339, 394, 395
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	83
NspV	TTCGAA	2 cut(s)	114, 279
PaeI	GCATGC	1 cut(s)	83
PagI	TCATGA	2 cut(s)	136, 367
PctI	GAATGC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	226, 307, 376
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	393
Psp1406I	AACGTT	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	339, 394, 395
PspPI	GGNCC	2 cut(s)	248, 393
PspPPI	RGGWCCY	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	388
PsuI	RGATCY	2 cut(s)	256, 343
SaqAI	TTAA	3 cut(s)	20, 189, 408
SatI	GCNGC	3 cut(s)	225, 306, 375
Sau3AI	GATC	4 cut(s)	9, 178, 256, 343
Sau96I	GGNCC	2 cut(s)	248, 393
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	1 cut(s)	383
SetI	ASST	9 cut(s)	33, 58, 144, 238, 310, 353, 362, 387, 455
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	4 cut(s)	144, 166, 274, 361
SfcI	CTRYAG	1 cut(s)	375
SfuI	TTCGAA	2 cut(s)	114, 279
SinI	GGWCC	1 cut(s)	393
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	2 cut(s)	22, 116
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	1 cut(s)	347
TaiI	ACGT	2 cut(s)	58, 238
TaqI	TCGA	2 cut(s)	114, 279
TasI	AATT	2 cut(s)	22, 116
Tru1I	TTAA	3 cut(s)	20, 189, 408
Tru9I	TTAA	3 cut(s)	20, 189, 408
TseI	GCWGC	3 cut(s)	224, 305, 374
TspDTI	ATGAA	2 cut(s)	138, 356
Van91I	CCANNNNNTGG	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	393
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.