AT4G29330

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004629
Physical Location & Seq
Forward (+)
14444553 .. 14447237
2685 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G29330.2

Sequence Viewer

Length: 801 bp
ATGTCTTCTCCTGGCGAATTCTATAACTCACTTCCACCTATAACCAAGGCTTATGGTACGTTGTGCTTTTTCACTACAGTAGCCACGCAGCTTGGCTTAGTTGCTCCCGTTCACATTGCTTTAATTCCTGAACTTGTACTTAAGCAGTTCCAGATCTGGAGGCTGATAACAAACTTGTTTTTCCTCGGTGGTTTCTCTATCAATTTTGGAATACGTCTTTTGATGATAGCAAGATATGGAGTTCAACTCGAGAAAGGGCCATTTGAAAGGCGGACAGCAGACTTTTTGTGGATGATGATCTTTGGATCCTTCACTCTATTGGTATTATCAGTCATACCATTTTTCTGGACACCGTTTCTTGGTGTTTCACTTGTGTTCATGCTTCTTTATCTCTGGAGCCGAGAATTTCCAAATGCCAACATCAGCCTATACGGTCTTGTCACTCTTAAGGCTTTCTACCTCCCATGGGCAATGCTAGCACTTGATGTTATCTTCGGTTCTCCGATCATGCCAGATCTTCTTGGCATCATAGCTGGACATCTATACTACTTCCTAACAGTCCTTCATCCTCTTGCTACCGGAAAAAACTACCTGAAAACCCCAAAATGGGTTAATAAAATCGTAGCAAGATGGCGAATTGGAGCTCCAGTTGCAAGTGTTCGACAAGCAGGTGGTGTAGGAGCAGCAGGACCCGGAGCTGGAGGAGGAGTAGGAGGAGGAGGAGCTTATTCAAGCGCTCGTGCCCCACCCGAGAGTTCAAACACAGCATTCAGAGGTCGATCATATCGTCTCACCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

266

Amino Acids

29.21

Weight (kDa)

9.95

Isoelectric Point (pI)

38.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 11 - 202 1.2e-48 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 659
Acc36I ACCTGC 1 cut(s) 659
AciI CCGC 1 cut(s) 271
AclWI GGATC 2 cut(s) 300, 313
AcsI RAATTY 2 cut(s) 17, 404
AfaI GTAC 2 cut(s) 58, 138
AfeI AGCGCT 1 cut(s) 736
AfiI CCNNNNNNNGG 5 cut(s) 359, 466, 606, 607, 698
AflII CTTAAG 2 cut(s) 140, 446
AgsI TTSAA 4 cut(s) 245, 266, 732, 759
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 5 cut(s) 91, 533, 644, 698, 725
AluI AGCT 5 cut(s) 91, 533, 644, 698, 725
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 1 cut(s) 794
AlwI GGATC 2 cut(s) 300, 313
Ama87I CYCGRG 2 cut(s) 248, 749
Aor51HI AGCGCT 1 cut(s) 736
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 2 cut(s) 88, 683
ApoI RAATTY 2 cut(s) 17, 404
AspLEI GCGC 1 cut(s) 737
AspS9I GGNCC 2 cut(s) 257, 689
AsuC2I CCSGG 1 cut(s) 693
AsuHPI GGTGA 1 cut(s) 784
AsuNHI GCTAGC 1 cut(s) 475
AvaI CYCGRG 2 cut(s) 248, 749
AvaII GGWCC 1 cut(s) 689
BaeGI GKGCMC 1 cut(s) 745
BamHI GGATCC 1 cut(s) 305
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 738
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 100, 695
BccI CCATC 1 cut(s) 624
BciT130I CCWGG 1 cut(s) 12
BcnI CCSGG 1 cut(s) 693
BcoDI GTCTC 1 cut(s) 794
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 75
BfoI RGCGCY 1 cut(s) 738
BfrI CTTAAG 2 cut(s) 140, 446
BfuAI ACCTGC 1 cut(s) 659
BglII AGATCT 2 cut(s) 153, 514
BisI GCNGC 2 cut(s) 89, 684
BlsI GCNGC 2 cut(s) 90, 685
Bme1390I CCNGG 2 cut(s) 12, 693
Bme18I GGWCC 1 cut(s) 689
BmeT110I CYCGRG 2 cut(s) 248, 749
BmgT120I GGNCC 2 cut(s) 257, 689
BmiI GGNNCC 3 cut(s) 307, 398, 691
BmrFI CCNGG 2 cut(s) 12, 693
BmsI GCATC 1 cut(s) 534
BmtI GCTAGC 1 cut(s) 479
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 4 cut(s) 178, 415, 630, 720
BpuMI CCSGG 1 cut(s) 693
BsaBI GATNNNNATC 1 cut(s) 296
BsaJI CCNNGG 3 cut(s) 45, 184, 464
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 4 cut(s) 633, 663, 693, 723
Bsc4I CCNNNNNNNGG 5 cut(s) 359, 466, 606, 607, 698
Bse1I ACTGG 1 cut(s) 647
Bse3DI GCAATG 2 cut(s) 114, 477
Bse8I GATNNNNATC 1 cut(s) 296
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 3 cut(s) 45, 184, 464
BseGI GGATG 2 cut(s) 297, 565
BseJI GATNNNNATC 1 cut(s) 296
BseLI CCNNNNNNNGG 5 cut(s) 359, 466, 606, 607, 698
BseMI GCAATG 2 cut(s) 114, 477
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 5 cut(s) 717, 720, 729, 732, 735
BseSI GKGCMC 1 cut(s) 745
BseXI GCAGC 2 cut(s) 100, 695
BshFI GGCC 1 cut(s) 259
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 2 cut(s) 248, 749
BsiSI CCGG 2 cut(s) 579, 693
BslI CCNNNNNNNGG 5 cut(s) 359, 466, 606, 607, 698
BsmAI GTCTC 1 cut(s) 794
BsmBI CGTCTC 1 cut(s) 794
BsmI GAATGC 1 cut(s) 767
BsnI GGCC 1 cut(s) 259
BsoBI CYCGRG 2 cut(s) 248, 749
Bsp1286I GDGCHC 2 cut(s) 646, 745
Bsp143I GATC 6 cut(s) 153, 297, 305, 504, 514, 779
Bsp19I CCATGG 1 cut(s) 464
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 259
BspLI GGNNCC 3 cut(s) 307, 398, 691
BspMI ACCTGC 1 cut(s) 659
BspOI GCTAGC 1 cut(s) 479
BspPI GGATC 2 cut(s) 300, 313
BspTI CTTAAG 2 cut(s) 140, 446
BsrDI GCAATG 2 cut(s) 114, 477
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 3 cut(s) 45, 184, 464
BssMI GATC 6 cut(s) 153, 297, 305, 504, 514, 779
BssSI CACGAG 1 cut(s) 738
BssT1I CCWWGG 2 cut(s) 45, 464
Bst2BI CACGAG 1 cut(s) 738
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 4 cut(s) 79, 354, 434, 559
BstAFI CTTAAG 2 cut(s) 140, 446
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 464
BstF5I GGATG 2 cut(s) 297, 565
BstH2I RGCGCY 1 cut(s) 738
BstHHI GCGC 1 cut(s) 737
BstKTI GATC 6 cut(s) 156, 300, 308, 507, 517, 782
BstMAI GTCTC 1 cut(s) 794
BstMBI GATC 6 cut(s) 153, 297, 305, 504, 514, 779
BstMWI GCNNNNNNNGC 2 cut(s) 476, 650
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 2 cut(s) 10, 691
BstSFI CTRYAG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 745
BstV1I GCAGC 2 cut(s) 100, 695
BstX2I RGATCY 3 cut(s) 153, 305, 514
BstXI CCANNNNNNTGG 1 cut(s) 345
BstYI RGATCY 3 cut(s) 153, 305, 514
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 464
BtsCI GGATG 2 cut(s) 297, 565
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 1 cut(s) 477
CfoI GCGC 1 cut(s) 737
Cfr13I GGNCC 2 cut(s) 257, 689
Csp6I GTAC 2 cut(s) 57, 137
CspCI CAANNNNNGTGG 2 cut(s) 73, 108
CviAII CATG 3 cut(s) 379, 465, 508
CviQI GTAC 2 cut(s) 57, 137
DdeI CTNAG 1 cut(s) 97
DpnI GATC 6 cut(s) 155, 299, 307, 506, 516, 781
DpnII GATC 6 cut(s) 153, 297, 305, 504, 514, 779
EciI GGCGGA 1 cut(s) 286
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 2 cut(s) 45, 464
Eco24I GRGCYC 1 cut(s) 646
Eco47I GGWCC 1 cut(s) 689
Eco47III AGCGCT 1 cut(s) 736
Eco53kI GAGCTC 1 cut(s) 644
Eco88I CYCGRG 2 cut(s) 248, 749
EcoICRI GAGCTC 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 689
EcoRI GAATTC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 2 cut(s) 45, 464
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 2 cut(s) 45, 464
Esp3I CGTCTC 1 cut(s) 794
FaeI CATG 3 cut(s) 382, 468, 511
FatI CATG 3 cut(s) 378, 464, 507
Fnu4HI GCNGC 2 cut(s) 89, 684
FokI GGATG 2 cut(s) 304, 552
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 2 cut(s) 89, 684
FspBI CTAG 1 cut(s) 476
GlaI GCGC 1 cut(s) 736
GluI GCNGC 2 cut(s) 89, 684
GsuI CTGGAG 4 cut(s) 178, 415, 630, 720
HaeII RGCGCY 1 cut(s) 738
HaeIII GGCC 1 cut(s) 259
HapII CCGG 2 cut(s) 579, 693
HhaI GCGC 1 cut(s) 737
Hin1II CATG 3 cut(s) 382, 468, 511
Hin6I GCGC 1 cut(s) 735
HinP1I GCGC 1 cut(s) 735
HpaII CCGG 2 cut(s) 579, 693
HphI GGTGA 1 cut(s) 784
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 2 cut(s) 504, 773
Hpy188III TCNNGA 6 cut(s) 128, 151, 157, 250, 346, 394
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 2 cut(s) 319, 572
HpyCH4III ACNGT 4 cut(s) 79, 354, 434, 559
HpyCH4IV ACGT 2 cut(s) 59, 214
HpyCH4V TGCA 1 cut(s) 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 650
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 2 cut(s) 59, 214
Hsp92II CATG 3 cut(s) 382, 468, 511
HspAI GCGC 1 cut(s) 735
Kzo9I GATC 6 cut(s) 153, 297, 305, 504, 514, 779
LmnI GCTCC 7 cut(s) 109, 396, 641, 649, 680, 695, 722
Lsp1109I GCAGC 2 cut(s) 100, 695
LweI GCATC 1 cut(s) 534
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 59, 214
MaeIII GTNAC 1 cut(s) 439
MalI GATC 6 cut(s) 155, 299, 307, 506, 516, 781
MboI GATC 6 cut(s) 153, 297, 305, 504, 514, 779
MboII GAAGA 2 cut(s) 484, 509
MflI RGATCY 3 cut(s) 153, 305, 514
MhlI GDGCHC 2 cut(s) 646, 745
MluCI AATT 5 cut(s) 17, 123, 202, 404, 636
MseI TTAA 4 cut(s) 122, 141, 447, 612
MspCI CTTAAG 2 cut(s) 140, 446
MspI CCGG 2 cut(s) 579, 693
MspR9I CCNGG 2 cut(s) 12, 693
Mva1269I GAATGC 1 cut(s) 767
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 476, 650
NciI CCSGG 1 cut(s) 693
NcoI CCATGG 1 cut(s) 464
NdeII GATC 6 cut(s) 153, 297, 305, 504, 514, 779
NheI GCTAGC 1 cut(s) 475
NlaIII CATG 3 cut(s) 382, 468, 511
NlaIV GGNNCC 3 cut(s) 307, 398, 691
NmeAIII GCCGAG 1 cut(s) 425
NmuCI GTSAC 1 cut(s) 439
PaeR7I CTCGAG 1 cut(s) 248
PaqCI CACCTGC 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 784
PctI GAATGC 1 cut(s) 767
PkrI GCNGC 2 cut(s) 90, 685
PpuMI RGGWCCY 1 cut(s) 689
Psp124BI GAGCTC 1 cut(s) 646
Psp5II RGGWCCY 1 cut(s) 689
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 3 cut(s) 307, 398, 691
PspPI GGNCC 2 cut(s) 257, 689
PspPPI RGGWCCY 1 cut(s) 689
PsuI RGATCY 3 cut(s) 153, 305, 514
RsaI GTAC 2 cut(s) 58, 138
RsaNI GTAC 2 cut(s) 57, 137
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 4 cut(s) 122, 141, 447, 612
SatI GCNGC 2 cut(s) 89, 684
Sau3AI GATC 6 cut(s) 153, 297, 305, 504, 514, 779
Sau96I GGNCC 2 cut(s) 257, 689
ScrFI CCNGG 2 cut(s) 12, 693
SduI GDGCHC 2 cut(s) 646, 745
SfaNI GCATC 1 cut(s) 534
SfcI CTRYAG 1 cut(s) 75
Sfr274I CTCGAG 1 cut(s) 248
SinI GGWCC 1 cut(s) 689
SlaI CTCGAG 1 cut(s) 248
SmlI CTYRAG 3 cut(s) 140, 248, 446
SmoI CTYRAG 3 cut(s) 140, 248, 446
Sse9I AATT 5 cut(s) 17, 123, 202, 404, 636
SsiI CCGC 1 cut(s) 271
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 10, 691
StyI CCWWGG 2 cut(s) 45, 464
TaaI ACNGT 4 cut(s) 79, 354, 434, 559
TaiI ACGT 2 cut(s) 62, 217
TaqI TCGA 3 cut(s) 249, 661, 778
TasI AATT 5 cut(s) 17, 123, 202, 404, 636
TatI WGTACW 1 cut(s) 136
Tru1I TTAA 4 cut(s) 122, 141, 447, 612
Tru9I TTAA 4 cut(s) 122, 141, 447, 612
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 2 cut(s) 88, 683
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 2 cut(s) 367, 554
Vha464I CTTAAG 2 cut(s) 140, 446
VpaK11BI GGWCC 1 cut(s) 689
XapI RAATTY 2 cut(s) 17, 404
XhoI CTCGAG 1 cut(s) 248
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.