Rh2DG068100

May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0004629
Physical Location & Seq
Reverse (-)
5150788 .. 5155602
4815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG068100.1

Sequence Viewer

Length: 645 bp
ATGTCTTCTCCTGCTGAATTCTATCAGTCACTCCCACCCATAAGCAAGGCTTACGGGACCATCTGTGTGGTGGCAACTGCGGCCTTTCAATTGGGACTTTATGATCCTCGAACTATTGCATTATTATATGGACCAGTATTTTCACAGTTCCAGGTGTGGAGGTTGATTACAAATTTCTTTTTCCTTGGGAAGTTCTCTGTCAACTTTGGAATTCGCCTTTTAATGATAGCAAGATATGGAGTTCAACTTGAAAAGGGACCATTTGAACGGCGTACTGCTGATTTCTTGTGGATGATGATATTTGGAGCCCTGACATTATTGGTTTTATCAGCCATCCCACTGTTTTGGTCTCCATTCTTGGGGGTATCTCTTGTGTTCATGCTTGTTTATGTCTGGAGTAGAGAATATCCGAATGCTAATATCAACTTATATGGCCTCGTGCAACTTAAGGCATTTTATTTCCCCTGGGCGATGCTTGCTTTGGACGTCATATTTGGTTCACCAATTTGGCCAGATCTGCTGGGAATCATTGCTGGACATCTGTACCACTTCTTGACCGTGTTGCATCCATTGGCAGGTGGAAAGAACATATTGAAGACTCCAAGATGGGTGTATCCTTACTTCTTTATTTATTTTCTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DER1

Protein Analysis

214

Amino Acids

24.58

Weight (kDa)

9.55

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DER1 PF04511 11 - 201 6.1e-46 Der1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 566
AatII GACGTC 1 cut(s) 489
Acc36I ACCTGC 1 cut(s) 566
AciI CCGC 1 cut(s) 80
AclWI GGATC 1 cut(s) 98
AcoI YGGCCR 1 cut(s) 509
AcsI RAATTY 3 cut(s) 17, 172, 210
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 2 cut(s) 274, 545
AfiI CCNNNNNNNGG 2 cut(s) 359, 575
AflII CTTAAG 1 cut(s) 446
AgsI TTSAA 5 cut(s) 89, 245, 251, 266, 595
AjnI CCWGG 2 cut(s) 150, 464
Alw26I GTCTC 1 cut(s) 354
AlwI GGATC 1 cut(s) 98
AoxI GGCC 3 cut(s) 81, 433, 509
ApoI RAATTY 3 cut(s) 17, 172, 210
ArsI GACNNNNNNTTYG 2 cut(s) 476, 508
AspS9I GGNCC 3 cut(s) 57, 131, 257
AsuHPI GGTGA 1 cut(s) 492
AvaII GGWCC 3 cut(s) 57, 131, 257
BaeI ACNNNNGTAYC 2 cut(s) 527, 560
BalI TGGCCA 1 cut(s) 511
BanII GRGCYC 1 cut(s) 310
BarI GAAGNNNNNNTAC 2 cut(s) 605, 637
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 1 cut(s) 602
BccI CCATC 3 cut(s) 68, 341, 600
BceAI ACGGC 1 cut(s) 284
BciT130I CCWGG 2 cut(s) 152, 466
BciVI GTATCC 1 cut(s) 624
BcoDI GTCTC 1 cut(s) 354
BfrI CTTAAG 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 566
BfuI GTATCC 1 cut(s) 624
BglII AGATCT 1 cut(s) 514
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 2 cut(s) 152, 466
Bme18I GGWCC 3 cut(s) 57, 131, 257
BmgT120I GGNCC 3 cut(s) 57, 131, 257
BmiI GGNNCC 3 cut(s) 58, 258, 307
BmrFI CCNGG 2 cut(s) 152, 466
BmsI GCATC 2 cut(s) 462, 574
BpiI GAAGAC 1 cut(s) 602
BpmI CTGGAG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 184, 464, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 359, 575
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 2 cut(s) 152, 466
BseDI CCNNGG 3 cut(s) 184, 464, 465
BseGI GGATG 3 cut(s) 297, 333, 565
BseLI CCNNNNNNNGG 2 cut(s) 359, 575
BseMI GCAATG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 134
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 3 cut(s) 83, 435, 511
BslFI GGGAC 3 cut(s) 70, 108, 270
BslI CCNNNNNNNGG 2 cut(s) 359, 575
BsmAI GTCTC 1 cut(s) 354
BsmFI GGGAC 3 cut(s) 70, 108, 270
BsmI GAATGC 1 cut(s) 418
BsnI GGCC 3 cut(s) 83, 435, 511
Bso31I GGTCTC 1 cut(s) 354
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 103, 514
BspACI CCGC 1 cut(s) 80
BspANI GGCC 3 cut(s) 83, 435, 511
BspLI GGNNCC 3 cut(s) 58, 258, 307
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 1 cut(s) 98
BspTI CTTAAG 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 1 cut(s) 134
BssECI CCNNGG 3 cut(s) 184, 464, 465
BssMI GATC 2 cut(s) 103, 514
BssNI GRCGYC 1 cut(s) 486
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 184
Bst2BI CACGAG 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 152, 466
Bst4CI ACNGT 3 cut(s) 147, 342, 559
BstACI GRCGYC 1 cut(s) 486
BstAFI CTTAAG 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 477
BstF5I GGATG 3 cut(s) 297, 333, 565
BstKTI GATC 2 cut(s) 106, 517
BstMAI GTCTC 1 cut(s) 354
BstMBI GATC 2 cut(s) 103, 514
BstMWI GCNNNNNNNGC 3 cut(s) 80, 476, 517
BstNI CCWGG 2 cut(s) 152, 466
BstSCI CCNGG 2 cut(s) 150, 464
BstV2I GAAGAC 1 cut(s) 602
BstX2I RGATCY 1 cut(s) 514
BstXI CCANNNNNNTGG 2 cut(s) 67, 345
BstYI RGATCY 1 cut(s) 514
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 3 cut(s) 83, 435, 511
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 3 cut(s) 297, 333, 565
BtsIMutI CAGTG 1 cut(s) 338
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 3 cut(s) 57, 131, 257
Csp6I GTAC 2 cut(s) 273, 544
CviAII CATG 1 cut(s) 379
CviJI RGCY 6 cut(s) 50, 83, 308, 332, 435, 511
CviKI_1 RGCY 6 cut(s) 50, 83, 308, 332, 435, 511
CviQI GTAC 2 cut(s) 273, 544
DpnI GATC 2 cut(s) 105, 516
DpnII GATC 2 cut(s) 103, 514
EaeI YGGCCR 1 cut(s) 509
Eco130I CCWWGG 1 cut(s) 184
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 354
Eco47I GGWCC 3 cut(s) 57, 131, 257
EcoRI GAATTC 2 cut(s) 17, 210
EcoRII CCWGG 2 cut(s) 150, 464
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 1 cut(s) 382
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FaqI GGGAC 3 cut(s) 70, 108, 270
FatI CATG 1 cut(s) 378
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 304, 320, 552
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 1 cut(s) 415
HaeIII GGCC 3 cut(s) 83, 435, 511
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 1 cut(s) 382
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 2 cut(s) 525, 598
HphI GGTGA 1 cut(s) 492
Hpy166II GTNNAC 2 cut(s) 202, 500
Hpy188I TCNGA 2 cut(s) 411, 639
Hpy188III TCNNGA 2 cut(s) 394, 553
Hpy8I GTNNAC 2 cut(s) 202, 500
HpyCH4III ACNGT 3 cut(s) 147, 342, 559
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 3 cut(s) 119, 442, 565
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 476, 517
HpySE526I ACGT 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 1 cut(s) 382
Kzo9I GATC 2 cut(s) 103, 514
LmnI GCTCC 1 cut(s) 305
LweI GCATC 2 cut(s) 462, 574
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 27
MalI GATC 2 cut(s) 105, 516
MboI GATC 2 cut(s) 103, 514
MboII GAAGA 1 cut(s) 607
MfeI CAATTG 1 cut(s) 89
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 1 cut(s) 310
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 5 cut(s) 17, 89, 172, 210, 504
MluNI TGGCCA 1 cut(s) 511
MlyI GAGTC 1 cut(s) 592
MnlI CCTC 3 cut(s) 117, 153, 446
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 2 cut(s) 221, 447
MslI CAYNNNNRTG 1 cut(s) 65
Msp20I TGGCCA 1 cut(s) 511
MspCI CTTAAG 1 cut(s) 446
MspR9I CCNGG 2 cut(s) 152, 466
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 418
MvaI CCWGG 2 cut(s) 152, 466
MwoI GCNNNNNNNGC 3 cut(s) 80, 476, 517
NdeII GATC 2 cut(s) 103, 514
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 3 cut(s) 58, 258, 307
NmuCI GTSAC 1 cut(s) 27
PaqCI CACCTGC 1 cut(s) 566
PasI CCCWGGG 1 cut(s) 465
PctI GAATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 525
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp6I CCWGG 2 cut(s) 150, 464
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 2 cut(s) 150, 464
PspN4I GGNNCC 3 cut(s) 58, 258, 307
PspPI GGNCC 3 cut(s) 57, 131, 257
PsuI RGATCY 1 cut(s) 514
RsaI GTAC 2 cut(s) 274, 545
RsaNI GTAC 2 cut(s) 273, 544
RseI CAYNNNNRTG 1 cut(s) 65
SaqAI TTAA 2 cut(s) 221, 447
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 2 cut(s) 103, 514
Sau96I GGNCC 3 cut(s) 57, 131, 257
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 2 cut(s) 152, 466
SduI GDGCHC 1 cut(s) 310
SetI ASST 4 cut(s) 156, 164, 489, 580
SfaNI GCATC 2 cut(s) 462, 574
SinI GGWCC 3 cut(s) 57, 131, 257
SmiMI CAYNNNNRTG 1 cut(s) 65
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 5 cut(s) 17, 89, 172, 210, 504
SsiI CCGC 1 cut(s) 80
StyD4I CCNGG 2 cut(s) 150, 464
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 3 cut(s) 147, 342, 559
TaiI ACGT 1 cut(s) 489
TaqI TCGA 1 cut(s) 109
TasI AATT 5 cut(s) 17, 89, 172, 210, 504
TauI GCSGC 1 cut(s) 83
TfiI GAWTC 1 cut(s) 525
Tru1I TTAA 2 cut(s) 221, 447
Tru9I TTAA 2 cut(s) 221, 447
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 1 cut(s) 367
TspRI CASTG 1 cut(s) 345
Vha464I CTTAAG 1 cut(s) 446
VpaK11BI GGWCC 3 cut(s) 57, 131, 257
XapI RAATTY 3 cut(s) 17, 172, 210
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.