Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000524.1

Orthogroup ID

OG0004629

Physical Location & Seq

Genomic Coordinates Reverse (-)

123507 .. 125767

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000524.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

atgtcttctcctgctgaattctatcagtcactcccacccataagcaaggcttacgggaccatctgtgtggtggcaactgcggcctttcaattgggactttatgatcctcgcactattgcattattatatggaccagtattttcacagttccaggtgtggaggttgattacaaatttctttttccttgggaagttctctgtcaactttggaattcgccttttaatgatagcaagatatggagttcaacttgaaaagggaccatttgaacggcgtactgctgatttcttgtggatgatgatatttggagccctgacattattggttttatcagccatcccactgttttggtctccattcttgggggtatctcttgtgttcatgcttgtttatgtctggagtagagaatatccgaatgctaatatcaacttatatggcctcgtgcaacttaaggcattttatttcccctgggcgatgcttgctttggacgtcatatttggttcaccaatttggccagatctgctgggaatcattgctggacatctgtaccacttcttgaccgtgttgcatccattggcaggtggaaagaacatattgaagactccaagatgggtacataaaatagttgcaagatggaggataggtgctcctccaccaacaagccgatcccaacctgctgctgctgccgctgccgctgccgctgccggtacgggtacgggtgcggctttcagagggaggtcttatcgacttaatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

251

Amino Acids

27.93

Weight (kDa)

10.09

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29330
fragaria_vesca	FvH4_1g06480 FvH4_1g06480 FvH4_7g27031
malus_domestica	MD02G1068100.v1.1 MD07G1249900.v1.1 MD15G1199700.v1.1
prunus_persica	Prupe.2G273500_v2.0.a1 Prupe.7G217500_v2.0.a1 Prupe.7G217500_v2.0.a1
pyrus_communis	pycom02g05390 pycom07g22320 pycom15g17720
rosa_chinensis	RchiOBHm_Chr1g0373841 RchiOBHm_Chr2g0092231
rosa_laevigata	RLG00000016288 RLG00000026801
rosa_multiflora	Rmu_sc0000524.1_g000026
rosa_roxburghii	Rroxscaffold_2G00149350
rosa_rugosa	Rorug01G0379500 Rorug02G0023900
rosa_samantha	Rh1AG389200 Rh1BG353400 Rh1CG366700 Rh1DG384400 Rh2AG069700 Rh2BG069200 Rh2CG070400 Rh2DG068100
rosa_wichuraiana	Rw1G034600 Rw2G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	566
AatII	GACGTC	1 cut(s)	489
Acc36I	ACCTGC	2 cut(s)	566, 679
AciI	CCGC	5 cut(s)	80, 684, 690, 696, 719
AclWI	GGATC	2 cut(s)	98, 657
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	3 cut(s)	17, 172, 210
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	5 cut(s)	274, 545, 612, 706, 712
AfiI	CCNNNNNNNGG	2 cut(s)	359, 575
AflII	CTTAAG	1 cut(s)	446
AgsI	TTSAA	5 cut(s)	89, 245, 251, 266, 595
AjnI	CCWGG	2 cut(s)	150, 464
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	2 cut(s)	98, 657
AoxI	GGCC	3 cut(s)	81, 433, 509
ApeKI	GCWGC	6 cut(s)	674, 677, 680, 686, 692, 698
ApoI	RAATTY	3 cut(s)	17, 172, 210
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
AspS9I	GGNCC	3 cut(s)	57, 131, 257
AsuHPI	GGTGA	1 cut(s)	492
AvaII	GGWCC	3 cut(s)	57, 131, 257
BaeI	ACNNNNGTAYC	2 cut(s)	527, 560
BalI	TGGCCA	1 cut(s)	511
BanII	GRGCYC	1 cut(s)	310
BauI	CACGAG	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	602
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	6 cut(s)	661, 664, 667, 673, 679, 685
BccI	CCATC	4 cut(s)	68, 341, 600, 624
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	2 cut(s)	152, 466
BcoDI	GTCTC	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	446
BfuAI	ACCTGC	2 cut(s)	566, 679
BglII	AGATCT	1 cut(s)	514
Bme1390I	CCNGG	2 cut(s)	152, 466
Bme18I	GGWCC	3 cut(s)	57, 131, 257
BmgT120I	GGNCC	3 cut(s)	57, 131, 257
BmiI	GGNNCC	3 cut(s)	58, 258, 307
BmrFI	CCNGG	2 cut(s)	152, 466
BmsI	GCATC	2 cut(s)	462, 574
BpiI	GAAGAC	1 cut(s)	602
BpmI	CTGGAG	1 cut(s)	415
BsaHI	GRCGYC	1 cut(s)	486
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	3 cut(s)	184, 464, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	625, 655
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 575
Bse118I	RCCGGY	1 cut(s)	701
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	2 cut(s)	152, 466
BseDI	CCNNGG	3 cut(s)	184, 464, 465
BseGI	GGATG	3 cut(s)	297, 333, 565
BseLI	CCNNNNNNNGG	2 cut(s)	359, 575
BseMI	GCAATG	1 cut(s)	528
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	636
BseXI	GCAGC	6 cut(s)	661, 664, 667, 673, 679, 685
BseYI	CCCAGC	1 cut(s)	520
BshFI	GGCC	3 cut(s)	83, 435, 511
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	1 cut(s)	702
BslFI	GGGAC	3 cut(s)	70, 108, 270
BslI	CCNNNNNNNGG	2 cut(s)	359, 575
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	3 cut(s)	70, 108, 270
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	3 cut(s)	83, 435, 511
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	2 cut(s)	310, 646
Bsp143I	GATC	3 cut(s)	103, 514, 662
BspACI	CCGC	5 cut(s)	80, 684, 690, 696, 719
BspANI	GGCC	3 cut(s)	83, 435, 511
BspLI	GGNNCC	3 cut(s)	58, 258, 307
BspMI	ACCTGC	2 cut(s)	566, 679
BspPI	GGATC	2 cut(s)	98, 657
BspTI	CTTAAG	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	701
BssECI	CCNNGG	3 cut(s)	184, 464, 465
BssMI	GATC	3 cut(s)	103, 514, 662
BssNI	GRCGYC	1 cut(s)	486
BssSI	CACGAG	1 cut(s)	437
BssT1I	CCWWGG	1 cut(s)	184
Bst2BI	CACGAG	1 cut(s)	437
Bst2UI	CCWGG	2 cut(s)	152, 466
Bst4CI	ACNGT	3 cut(s)	147, 342, 559
BstACI	GRCGYC	1 cut(s)	486
BstAFI	CTTAAG	1 cut(s)	446
BstC8I	GCNNGC	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	297, 333, 565
BstKTI	GATC	3 cut(s)	106, 517, 665
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	3 cut(s)	103, 514, 662
BstNI	CCWGG	2 cut(s)	152, 466
BstSCI	CCNGG	2 cut(s)	150, 464
BstV1I	GCAGC	6 cut(s)	661, 664, 667, 673, 679, 685
BstV2I	GAAGAC	1 cut(s)	602
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	2 cut(s)	67, 345
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	3 cut(s)	83, 435, 511
BtgZI	GCGATG	1 cut(s)	485
BtsCI	GGATG	3 cut(s)	297, 333, 565
BtsIMutI	CAGTG	1 cut(s)	338
BveI	ACCTGC	2 cut(s)	566, 679
Cac8I	GCNNGC	1 cut(s)	477
Cfr10I	RCCGGY	1 cut(s)	701
Cfr13I	GGNCC	3 cut(s)	57, 131, 257
Csp6I	GTAC	5 cut(s)	273, 544, 611, 705, 711
CviAII	CATG	1 cut(s)	379
CviJI	RGCY	8 cut(s)	50, 83, 308, 332, 435, 511, 660, 722
CviKI_1	RGCY	8 cut(s)	50, 83, 308, 332, 435, 511, 660, 722
CviQI	GTAC	5 cut(s)	273, 544, 611, 705, 711
DpnI	GATC	3 cut(s)	105, 516, 664
DpnII	GATC	3 cut(s)	103, 514, 662
EaeI	YGGCCR	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	310
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	3 cut(s)	57, 131, 257
EcoRI	GAATTC	2 cut(s)	17, 210
EcoRII	CCWGG	2 cut(s)	150, 464
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	382
FalI	AAGNNNNNCTT	2 cut(s)	34, 66
FaqI	GGGAC	3 cut(s)	70, 108, 270
FatI	CATG	1 cut(s)	378
FokI	GGATG	3 cut(s)	304, 320, 552
FriOI	GRGCYC	1 cut(s)	310
GsaI	CCCAGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	83, 435, 511
HapII	CCGG	1 cut(s)	702
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	1 cut(s)	382
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	525, 598
HpaII	CCGG	1 cut(s)	702
HphI	GGTGA	1 cut(s)	492
Hpy166II	GTNNAC	2 cut(s)	202, 500
Hpy188I	TCNGA	2 cut(s)	411, 728
Hpy188III	TCNNGA	2 cut(s)	394, 553
Hpy8I	GTNNAC	2 cut(s)	202, 500
HpyCH4III	ACNGT	3 cut(s)	147, 342, 559
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	4 cut(s)	119, 442, 565, 626
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	1 cut(s)	382
Kzo9I	GATC	3 cut(s)	103, 514, 662
LmnI	GCTCC	2 cut(s)	305, 649
Lsp1109I	GCAGC	6 cut(s)	661, 664, 667, 673, 679, 685
LweI	GCATC	2 cut(s)	462, 574
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	3 cut(s)	105, 516, 664
MboI	GATC	3 cut(s)	103, 514, 662
MboII	GAAGA	1 cut(s)	607
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	310, 646
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	5 cut(s)	17, 89, 172, 210, 504
MluNI	TGGCCA	1 cut(s)	511
MlyI	GAGTC	1 cut(s)	592
MnlI	CCTC	7 cut(s)	117, 153, 446, 627, 657, 722, 726
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	4 cut(s)	221, 447, 747, 754
MslI	CAYNNNNRTG	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	511
MspA1I	CMGCKG	3 cut(s)	686, 692, 698
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	702
MspR9I	CCNGG	2 cut(s)	152, 466
MunI	CAATTG	1 cut(s)	89
Mva1269I	GAATGC	1 cut(s)	418
MvaI	CCWGG	2 cut(s)	152, 466
NdeII	GATC	3 cut(s)	103, 514, 662
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	3 cut(s)	58, 258, 307
NmuCI	GTSAC	1 cut(s)	27
PaqCI	CACCTGC	1 cut(s)	566
PasI	CCCWGGG	1 cut(s)	465
PctI	GAATGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	525
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	150, 464
PspFI	CCCAGC	1 cut(s)	520
PspGI	CCWGG	2 cut(s)	150, 464
PspN4I	GGNNCC	3 cut(s)	58, 258, 307
PspPI	GGNCC	3 cut(s)	57, 131, 257
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	5 cut(s)	274, 545, 612, 706, 712
RsaNI	GTAC	5 cut(s)	273, 544, 611, 705, 711
RseI	CAYNNNNRTG	1 cut(s)	65
SaqAI	TTAA	4 cut(s)	221, 447, 747, 754
Sau3AI	GATC	3 cut(s)	103, 514, 662
Sau96I	GGNCC	3 cut(s)	57, 131, 257
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	2 cut(s)	152, 466
SduI	GDGCHC	2 cut(s)	310, 646
SetI	ASST	7 cut(s)	156, 164, 489, 580, 643, 673, 737
SfaNI	GCATC	2 cut(s)	462, 574
SinI	GGWCC	3 cut(s)	57, 131, 257
SmiMI	CAYNNNNRTG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	5 cut(s)	17, 89, 172, 210, 504
SsiI	CCGC	5 cut(s)	80, 684, 690, 696, 719
StyD4I	CCNGG	2 cut(s)	150, 464
StyI	CCWWGG	1 cut(s)	184
TaaI	ACNGT	3 cut(s)	147, 342, 559
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	1 cut(s)	742
TasI	AATT	5 cut(s)	17, 89, 172, 210, 504
TauI	GCSGC	5 cut(s)	83, 686, 692, 698, 722
TfiI	GAWTC	1 cut(s)	525
Tru1I	TTAA	4 cut(s)	221, 447, 747, 754
Tru9I	TTAA	4 cut(s)	221, 447, 747, 754
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	1 cut(s)	27
TseI	GCWGC	6 cut(s)	674, 677, 680, 686, 692, 698
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	3 cut(s)	57, 131, 257
XapI	RAATTY	3 cut(s)	17, 172, 210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
ZraI	GACGTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.