Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004629

Physical Location & Seq

Genomic Coordinates Reverse (-)

12568980 .. 12571972

Gene Structure 2993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g17720.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTTCTCCTGCCGAGGGAGTCCTTGAGATGCTAGTATGGTATCAGTCACTCCCACCCATAAGCAAGGCTTATGGTACCCTCTGTGTAATTGCAACTACAGCCTTTCAATTGGGATTTTATGATTGGAAAAGTATTGCATTAGTACATAAACTAGTATTCTCACATTTCCAGGTTTGGAGGTTGTTTACAAACTTCTTTTTCCTTGGAAACTTCTCCGTCAACTTTGGAATCCGCATTCTGATGATAGCAAGATATGGGGTTCAACTTGAAAAGGGACCATTTGATCGACGAACAGCAGATTTCTTGTGGATGATGGTATTTGGAGCCACGACATTGTTGGTTTTATCTGCTATCCCTATTTTCTATTCTCCTTTCTTGGGGATATCTCTTGTGTTCATGCTTGTTTATGTCTGGAGTAGAGAATTTCCAAATGCCAACGTCAACATATATGGTCTCGTGCAACTTAAGGCGTTTTATCTACCTTGGGCAATGCTTGCTTTGGACGTCATCTTTGGTTCCCCATTTATGCCAGATCTGCTGGGAATCATTGCCGGACATCTGTTTTACTTCTTGACTGTGTTGCATCCATTGGCAGGTGGAAAGAACATATTACAGACTCCAAGATGGGTACGTAAAATAGTTGCAAGATGGAGGATAGGAGCTCCTCCACCAACTAGCCGAACCCAAGAACCTGCCCCAGCTGCTGCTGGTGTGGCGTTCAGAGGGAGGTCTTATCGACTTAGCGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

DER1

Protein Analysis

251

Amino Acids

28.32

Weight (kDa)

9.95

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29330
fragaria_vesca	FvH4_1g06480 FvH4_1g06480 FvH4_7g27031
malus_domestica	MD02G1068100.v1.1 MD07G1249900.v1.1 MD15G1199700.v1.1
prunus_persica	Prupe.2G273500_v2.0.a1 Prupe.7G217500_v2.0.a1 Prupe.7G217500_v2.0.a1
pyrus_communis	pycom02g05390 pycom07g22320 pycom15g17720
rosa_chinensis	RchiOBHm_Chr1g0373841 RchiOBHm_Chr2g0092231
rosa_laevigata	RLG00000016288 RLG00000026801
rosa_multiflora	Rmu_sc0000524.1_g000026
rosa_roxburghii	Rroxscaffold_2G00149350
rosa_rugosa	Rorug01G0379500 Rorug02G0023900
rosa_samantha	Rh1AG389200 Rh1BG353400 Rh1CG366700 Rh1DG384400 Rh2AG069700 Rh2BG069200 Rh2CG070400 Rh2DG068100
rosa_wichuraiana	Rw1G034600 Rw2G006250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	587
AatII	GACGTC	1 cut(s)	510
Acc36I	ACCTGC	2 cut(s)	587, 703
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	1 cut(s)	235
AcsI	RAATTY	1 cut(s)	425
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	3 cut(s)	79, 147, 633
AfiI	CCNNNNNNNGG	3 cut(s)	17, 380, 596
AflII	CTTAAG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	110, 266, 272
AhlI	ACTAGT	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	2 cut(s)	665, 704
AluI	AGCT	2 cut(s)	665, 704
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	461
AlwNI	CAGNNNCTG	1 cut(s)	707
ApeKI	GCWGC	2 cut(s)	704, 707
ApoI	RAATTY	1 cut(s)	425
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	667
BauI	CACGAG	1 cut(s)	458
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	691, 694
BccI	CCATC	3 cut(s)	310, 621, 645
BciT130I	CCWGG	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	461
BcuI	ACTAGT	1 cut(s)	154
BfaI	CTAG	3 cut(s)	35, 155, 678
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	467
BfuAI	ACCTGC	2 cut(s)	587, 703
BglII	AGATCT	1 cut(s)	535
BisI	GCNGC	2 cut(s)	705, 708
BlsI	GCNGC	2 cut(s)	706, 709
Bme1390I	CCNGG	1 cut(s)	173
Bme18I	GGWCC	1 cut(s)	278
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	4 cut(s)	79, 279, 328, 520
BmrFI	CCNGG	1 cut(s)	173
BmsI	GCATC	2 cut(s)	21, 595
BpmI	CTGGAG	1 cut(s)	436
BpuEI	CTTGAG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	507
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	3 cut(s)	15, 205, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 380, 596
Bse3DI	GCAATG	2 cut(s)	498, 549
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	3 cut(s)	15, 205, 485
BseGI	GGATG	2 cut(s)	318, 586
BseLI	CCNNNNNNNGG	3 cut(s)	17, 380, 596
BseMI	GCAATG	2 cut(s)	498, 549
BseRI	GAGGAG	1 cut(s)	657
BseXI	GCAGC	2 cut(s)	691, 694
BseYI	CCCAGC	2 cut(s)	541, 700
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	17, 380, 596
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	237
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	2 cut(s)	286, 535
BspACI	CCGC	1 cut(s)	235
BspLI	GGNNCC	4 cut(s)	79, 279, 328, 520
BspMI	ACCTGC	2 cut(s)	587, 703
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	467
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	498, 549
BssECI	CCNNGG	3 cut(s)	15, 205, 485
BssMI	GATC	2 cut(s)	286, 535
BssNI	GRCGYC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	205, 485
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	580
BstACI	GRCGYC	1 cut(s)	507
BstAFI	CTTAAG	1 cut(s)	467
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	635
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	318, 586
BstKTI	GATC	2 cut(s)	289, 538
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	2 cut(s)	286, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 497, 538, 704, 716
BstNI	CCWGG	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	171
BstSFI	CTRYAG	1 cut(s)	99
BstSNI	TACGTA	1 cut(s)	635
BstV1I	GCAGC	2 cut(s)	691, 694
BstX2I	RGATCY	1 cut(s)	535
BstYI	RGATCY	1 cut(s)	535
BtsCI	GGATG	2 cut(s)	318, 586
BveI	ACCTGC	2 cut(s)	587, 703
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	1 cut(s)	707
Cfr13I	GGNCC	1 cut(s)	278
Csp6I	GTAC	3 cut(s)	78, 146, 632
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	6 cut(s)	71, 104, 329, 665, 681, 704
CviKI_1	RGCY	6 cut(s)	71, 104, 329, 665, 681, 704
CviQI	GTAC	3 cut(s)	78, 146, 632
DdeI	CTNAG	1 cut(s)	743
DpnI	GATC	2 cut(s)	288, 537
DpnII	GATC	2 cut(s)	286, 535
Ecl136II	GAGCTC	1 cut(s)	665
Eco105I	TACGTA	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	205, 485
Eco24I	GRGCYC	1 cut(s)	667
Eco31I	GGTCTC	1 cut(s)	461
Eco32I	GATATC	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	278
Eco53kI	GAGCTC	1 cut(s)	665
EcoICRI	GAGCTC	1 cut(s)	665
EcoRII	CCWGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	387
EcoT14I	CCWWGG	2 cut(s)	205, 485
EcoT38I	GRGCYC	1 cut(s)	667
ErhI	CCWWGG	2 cut(s)	205, 485
FaeI	CATG	1 cut(s)	403
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	705, 708
FokI	GGATG	2 cut(s)	325, 573
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	2 cut(s)	705, 708
FspBI	CTAG	3 cut(s)	35, 155, 678
GluI	GCNGC	2 cut(s)	705, 708
GsaI	CCCAGC	2 cut(s)	545, 704
GsuI	CTGGAG	1 cut(s)	436
HapII	CCGG	1 cut(s)	555
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	1 cut(s)	403
HincII	GTYRAC	2 cut(s)	223, 445
HindII	GTYRAC	2 cut(s)	223, 445
HinfI	GANTC	4 cut(s)	21, 231, 546, 619
HpaII	CCGG	1 cut(s)	555
Hpy166II	GTNNAC	3 cut(s)	189, 223, 445
Hpy188I	TCNGA	2 cut(s)	243, 725
Hpy188III	TCNNGA	2 cut(s)	415, 574
Hpy8I	GTNNAC	3 cut(s)	189, 223, 445
Hpy99I	CGWCG	1 cut(s)	294
HpyCH4III	ACNGT	1 cut(s)	580
HpyCH4IV	ACGT	3 cut(s)	441, 507, 634
HpyCH4V	TGCA	5 cut(s)	95, 140, 463, 586, 647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 497, 538, 704, 716
HpyF3I	CTNAG	1 cut(s)	743
HpySE526I	ACGT	3 cut(s)	441, 507, 634
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	286, 535
LmnI	GCTCC	3 cut(s)	326, 662, 670
Lsp1109I	GCAGC	2 cut(s)	691, 694
LweI	GCATC	2 cut(s)	21, 595
MaeI	CTAG	3 cut(s)	35, 155, 678
MaeII	ACGT	3 cut(s)	441, 507, 634
MaeIII	GTNAC	1 cut(s)	48
MalI	GATC	2 cut(s)	288, 537
MboI	GATC	2 cut(s)	286, 535
MfeI	CAATTG	1 cut(s)	110
MflI	RGATCY	1 cut(s)	535
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	3 cut(s)	90, 110, 425
MlyI	GAGTC	2 cut(s)	30, 613
MnlI	CCTC	7 cut(s)	10, 92, 174, 648, 678, 719, 723
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	704
MspCI	CTTAAG	1 cut(s)	467
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	173
MunI	CAATTG	1 cut(s)	110
Mva1269I	GAATGC	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	101, 497, 538, 704, 716
NdeII	GATC	2 cut(s)	286, 535
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	4 cut(s)	79, 279, 328, 520
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	48
PaqCI	CACCTGC	1 cut(s)	587
PctI	GAATGC	1 cut(s)	237
PfeI	GAWTC	2 cut(s)	231, 546
PkrI	GCNGC	2 cut(s)	706, 709
PleI	GAGTC	2 cut(s)	29, 613
PpsI	GAGTC	2 cut(s)	29, 613
Ppu21I	YACGTR	1 cut(s)	635
Psp124BI	GAGCTC	1 cut(s)	667
Psp6I	CCWGG	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	541, 700
PspGI	CCWGG	1 cut(s)	171
PspN4I	GGNNCC	4 cut(s)	79, 279, 328, 520
PspPI	GGNCC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	535
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	3 cut(s)	79, 147, 633
RsaNI	GTAC	3 cut(s)	78, 146, 632
RseI	CAYNNNNRTG	1 cut(s)	242
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	2 cut(s)	705, 708
Sau3AI	GATC	2 cut(s)	286, 535
Sau96I	GGNCC	1 cut(s)	278
SchI	GAGTC	2 cut(s)	30, 613
ScrFI	CCNGG	1 cut(s)	173
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	21, 595
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	278
SmiMI	CAYNNNNRTG	1 cut(s)	242
SmlI	CTYRAG	2 cut(s)	26, 467
SmoI	CTYRAG	2 cut(s)	26, 467
SnaBI	TACGTA	1 cut(s)	635
SpeI	ACTAGT	1 cut(s)	154
Sse9I	AATT	3 cut(s)	90, 110, 425
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	3 cut(s)	35, 155, 678
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	171
StyI	CCWWGG	2 cut(s)	205, 485
TaaI	ACNGT	1 cut(s)	580
TaiI	ACGT	3 cut(s)	444, 510, 637
TaqI	TCGA	2 cut(s)	289, 739
TasI	AATT	3 cut(s)	90, 110, 425
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	231, 546
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	2 cut(s)	704, 707
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	1 cut(s)	388
TspGWI	ACGGA	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	467
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	425
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XspI	CTAG	3 cut(s)	35, 155, 678
ZraI	GACGTC	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.